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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073516 ID=TCONS_00073516|Name=TCONS_00073516|organism=Clytia hemisphaerica|type=transcript|length=1741bp TACCGGCTATCATTATAAAGATTGTTGCAAAGATAACTTTAGATCCTACC CAGTGTAAACACATAATTAAAACTTATTCAAAATACACCGTGTATACGAG GCTTTATATTAATAGATGATATAACGTAACGATTGAATATGTCAAAAAAC AGTTtgcaagaaataaataaactacgTTGGCAACTAAGTCAGGAGTTCAA TAGTTCTATACACAAGTTTCGCTATGATTATTCAAACTTatcgagtctgc taaattatcATTTGCAAGCATCGAGGTTCCAACACACGTGGAGTTCAATT CGTTCCCATTACGTTTTTTGTTAAGTGATAATTTCAATGCTGTCGTGTAA GCCATCCTTTGTAAAATATGTTTTAATCCTTTTTGGAAGTCTTTATGAAA GAAACAATATATGAATGGATTCAAAGAGCTGTTCAAAAGAGGTAGATACT CTACGACAATTTTATACGGAACGCCTTCTAAAGTTACTTTTGTGATAAAT GTATCTATAACCACAAGAATGATCAAAGGTACCCAACACACTACGAAAGT TCCAAAAACTACACAAATCACTTTAGTAGCTTTCAACTCCAATAAACGTG CTGCAATGAACTTTTTCGTGCTATGCGCTGCCACTTTATCGAGCGACGCT TGACTTGAATAATTATTGTAACGTTTGCGGATTTCTTTAGCGTGGGCCAT CGCTATATGCCACATACGGCCGTACAggagcgccatgatgagacATGGTA CTACAAAAACAATCATGTATAAATAAGCCGAAAATTGATCCCTGGTCCTG AGACATCTGTAACCTTTGATTTGGAAGGTGCCTTGTAATTGCAGCGTACT CCAATTCACATTGTTCATAAAGCCCCAAGATAAAGCGTAAACCCAAATAG ACGATAAcataattttgatatttttgaaagagAAAAGTCTGGGATAATAA AATGGTTTGTCAATAGCAATAAATCTATCAATACATATGACTAGTAGATG GGTTATGGAGGTTGTAAATATAAACGGATCAATATTTCTGTACATTCGAC ACATCTCTTGACCCATACAGAATTTCCCATTCTTTGAATATGTGAAGATT TTGATCGGGATTATCACCAACCCAGATAACAAATCACCAATTGCTAATGA AAGTAGAAAATAGTTAGTAGCTCTTTTACGAAGTGTATTGGATTTAATAA TGACAGCGCAAACGAGGCTGTTGCCAAGGACACCGATGAGGAATGTCAGG ACTAAAATAGTGATGTAGACAGCGAAGGTGCTGGTCACCTGGACTTGTGG ACCACAATGAAAACTTTTGCATTCCATCATTTCTTTAGTATGGTTCGATT TCAGATAAAATTTGAACACATCACTGACGTATACATTAGTGTCGTTATGA TGGTGGCTGCAGGGTGCCATGTATTCCTTCATCGCATCCATTGATTTCAA TATATTTATATCAACTCCATCGAAAAGTTCTGTGACACAACATTTGAGTT CTTGACTTATGTAAGTCGGAGTTGAAAAGAATCGTGACGCAATTAAACCG AAATCGATTCCTGTAGTGTTGTAAATGGTAGACCCATTGTTGCGGTGGCT GATATTGTTTCCAGTGTTGTTAAGGTGGCCTATTTGTGTCCATGAGACAT TACTGAATCGGTTCAGGCTTGGAGTTGAATTAATCATTTTTCTAggaaaa atttaaagaattatGTAGTAGTGTTCTATAAATGGAACTTC Run BLAST on NCBI protein sequence of TCONS_00073516-protein >TCONS_00073516-protein ID=TCONS_00073516-protein|Name=TCONS_00073516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=493bp
MINSTPSLNRFSNVSWTQIGHLNNTGNNISHRNNGSTIYNTTGIDFGLIA SRFFSTPTYISQELKCCVTELFDGVDINILKSMDAMKEYMAPCSHHHNDT NVYVSDVFKFYLKSNHTKEMMECKSFHCGPQVQVTSTFAVYITILVLTFL IGVLGNSLVCAVIIKSNTLRKRATNYFLLSLAIGDLLSGLVIIPIKIFTY SKNGKFCMGQEMCRMYRNIDPFIFTTSITHLLVICIDRFIAIDKPFYYPR LFSFKNIKIMLSSIWVYALSWGFMNNVNWSTLQLQGTFQIKGYRCLRTRD QFSAYLYMIVFVVPCLIMALLYGRMWHIAMAHAKEIRKRYNNYSSQASLD KVAAHSTKKFIAARLLELKATKVICVVFGTFVVCWVPLIILVVIDTFITK VTLEGVPYKIVVEYLPLLNSSLNPFIYCFFHKDFQKGLKHILQRMAYTTA LKLSLNKKRNGNELNSTCVGTSMLANDNLADSISLNNHSETCV Run BLAST on NCBI transcript from alignment at scaffold_93:123239..124979 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073516 ID=TCONS_00073516|Name=TCONS_00073516|organism=Clytia hemisphaerica|type=transcript|length=1741bp|location=Sequence derived from alignment at scaffold_93:123239..124979 (Clytia hemisphaerica) GAAGTTCCATTTATAGAACACTACTACataattctttaaatttttccTAG
AAAAATGATTAATTCAACTCCAAGCCTGAACCGATTCAGTAATGTCTCAT
GGACACAAATAGGCCACCTTAACAACACTGGAAACAATATCAGCCACCGC
AACAATGGGTCTACCATTTACAACACTACAGGAATCGATTTCGGTTTAAT
TGCGTCACGATTCTTTTCAACTCCGACTTACATAAGTCAAGAACTCAAAT
GTTGTGTCACAGAACTTTTCGATGGAGTTGATATAAATATATTGAAATCA
ATGGATGCGATGAAGGAATACATGGCACCCTGCAGCCACCATCATAACGA
CACTAATGTATACGTCAGTGATGTGTTCAAATTTTATCTGAAATCGAACC
ATACTAAAGAAATGATGGAATGCAAAAGTTTTCATTGTGGTCCACAAGTC
CAGGTGACCAGCACCTTCGCTGTCTACATCACTATTTTAGTCCTGACATT
CCTCATCGGTGTCCTTGGCAACAGCCTCGTTTGCGCTGTCATTATTAAAT
CCAATACACTTCGTAAAAGAGCTACTAACTATTTTCTACTTTCATTAGCA
ATTGGTGATTTGTTATCTGGGTTGGTGATAATCCCGATCAAAATCTTCAC
ATATTCAAAGAATGGGAAATTCTGTATGGGTCAAGAGATGTGTCGAATGT
ACAGAAATATTGATCCGTTTATATTTACAACCTCCATAACCCATCTACTA
GTCATATGTATTGATAGATTTATTGCTATTGACAAACCATTTTATTATCC
CAGACTTTTctctttcaaaaatatcaaaattatgTTATCGTCTATTTGGG
TTTACGCTTTATCTTGGGGCTTTATGAACAATGTGAATTGGAGTACGCTG
CAATTACAAGGCACCTTCCAAATCAAAGGTTACAGATGTCTCAGGACCAG
GGATCAATTTTCGGCTTATTTATACATGATTGTTTTTGTAGTACCATgtc
tcatcatggcgctccTGTACGGCCGTATGTGGCATATAGCGATGGCCCAC
GCTAAAGAAATCCGCAAACGTTACAATAATTATTCAAGTCAAGCGTCGCT
CGATAAAGTGGCAGCGCATAGCACGAAAAAGTTCATTGCAGCACGTTTAT
TGGAGTTGAAAGCTACTAAAGTGATTTGTGTAGTTTTTGGAACTTTCGTA
GTGTGTTGGGTACCTTTGATCATTCTTGTGGTTATAGATACATTTATCAC
AAAAGTAACTTTAGAAGGCGTTCCGTATAAAATTGTCGTAGAGTATCTAC
CTCTTTTGAACAGCTCTTTGAATCCATTCATATATTGTTTCTTTCATAAA
GACTTCCAAAAAGGATTAAAACATATTTTACAAAGGATGGCTTACACGAC
AGCATTGAAATTATCACTTAACAAAAAACGTAATGGGAACGAATTGAACT
CCACGTGTGTTGGAACCTCGATGCTTGCAAATgataatttagcagactcg
atAAGTTTGAATAATCATAGCGAAACTTGTGTATAGAACTATTGAACTCC
TGACTTAGTTGCCAAcgtagtttatttatttcttgcaAACTGTTTTTTGA
CATATTCAATCGTTACGTTATATCATCTATTAATATAAAGCCTCGTATAC
ACGGTGTATTTTGAATAAGTTTTAATTATGTGTTTACACTGGGTAGGATC
TAAAGTTATCTTTGCAACAATCTTTATAATGATAGCCGGTA Coding sequence (CDS) from alignment at scaffold_93:123239..124979 >TCONS_00073516 ID=TCONS_00073516|Name=TCONS_00073516|organism=Clytia hemisphaerica|type=CDS|length=1482bp|location=Sequence derived from alignment at scaffold_93:123239..124979 (Clytia hemisphaerica) ATGATTAATTCAACTCCAAGCCTGAACCGATTCAGTAATGTCTCATGGAC ACAAATAGGCCACCTTAACAACACTGGAAACAATATCAGCCACCGCAACA ATGGGTCTACCATTTACAACACTACAGGAATCGATTTCGGTTTAATTGCG TCACGATTCTTTTCAACTCCGACTTACATAAGTCAAGAACTCAAATGTTG TGTCACAGAACTTTTCGATGGAGTTGATATAAATATATTGAAATCAATGG ATGCGATGAAGGAATACATGGCACCCTGCAGCCACCATCATAACGACACT AATGTATACGTCAGTGATGTGTTCAAATTTTATCTGAAATCGAACCATAC TAAAGAAATGATGGAATGCAAAAGTTTTCATTGTGGTCCACAAGTCCAGG TGACCAGCACCTTCGCTGTCTACATCACTATTTTAGTCCTGACATTCCTC ATCGGTGTCCTTGGCAACAGCCTCGTTTGCGCTGTCATTATTAAATCCAA TACACTTCGTAAAAGAGCTACTAACTATTTTCTACTTTCATTAGCAATTG GTGATTTGTTATCTGGGTTGGTGATAATCCCGATCAAAATCTTCACATAT TCAAAGAATGGGAAATTCTGTATGGGTCAAGAGATGTGTCGAATGTACAG AAATATTGATCCGTTTATATTTACAACCTCCATAACCCATCTACTAGTCA TATGTATTGATAGATTTATTGCTATTGACAAACCATTTTATTATCCCAGA CTTTTctctttcaaaaatatcaaaattatgTTATCGTCTATTTGGGTTTA CGCTTTATCTTGGGGCTTTATGAACAATGTGAATTGGAGTACGCTGCAAT TACAAGGCACCTTCCAAATCAAAGGTTACAGATGTCTCAGGACCAGGGAT CAATTTTCGGCTTATTTATACATGATTGTTTTTGTAGTACCATgtctcat catggcgctccTGTACGGCCGTATGTGGCATATAGCGATGGCCCACGCTA AAGAAATCCGCAAACGTTACAATAATTATTCAAGTCAAGCGTCGCTCGAT AAAGTGGCAGCGCATAGCACGAAAAAGTTCATTGCAGCACGTTTATTGGA GTTGAAAGCTACTAAAGTGATTTGTGTAGTTTTTGGAACTTTCGTAGTGT GTTGGGTACCTTTGATCATTCTTGTGGTTATAGATACATTTATCACAAAA GTAACTTTAGAAGGCGTTCCGTATAAAATTGTCGTAGAGTATCTACCTCT TTTGAACAGCTCTTTGAATCCATTCATATATTGTTTCTTTCATAAAGACT TCCAAAAAGGATTAAAACATATTTTACAAAGGATGGCTTACACGACAGCA TTGAAATTATCACTTAACAAAAAACGTAATGGGAACGAATTGAACTCCAC GTGTGTTGGAACCTCGATGCTTGCAAATgataatttagcagactcgatAA GTTTGAATAATCATAGCGAAACTTGTGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073516-exon-scaffold_93-1491911889:123239..124979 | TCONS_00073516-exon-scaffold_93-1491911889:123239..124979 | Clytia hemisphaerica | exon |
TCONS_00073516-exon-scaffold_93-1510915933:123239..124979 | TCONS_00073516-exon-scaffold_93-1510915933:123239..124979 | Clytia hemisphaerica | exon |
TCONS_00073516-exon-scaffold_93-1575043694:123239..124979 | TCONS_00073516-exon-scaffold_93-1575043694:123239..124979 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_93 | supercontig | scaffold_93:123239..124979 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
Term | Definition |
GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00073516 vs. Swiss-Prot (Human)
Match: 5HT4R (5-hydroxytryptamine receptor 4 OS=Homo sapiens GN=HTR4 PE=1 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 8.887e-32 Identity = 94/316 (29.75%), Postives = 149/316 (47.15%), Query Frame = -1
Query: 362 VYITILVLTFLIGVLGNSLVCAVIIKSNTLRKRATNYFLLSLAIGDLLSGLVIIPIKIFTYSKNGKFCMGQEMCRMYRNIDPFIFTTSITHLLVICIDRFIAI-DKPFYYPRLFSFKNIKIMLSSIWVYALSWGFM------NNVNWSTLQLQGTFQIKG---YRCLRTRDQFSAYLYMIVFVVPCLIMALLYGRMWHIAMAHAKEIRK-RYNNYSSQASLDKVAAHSTKKFIAARLLELKATKVICVVFGTFVVCWVPLIILVVIDTFITKVTLEGVPYKIVVEYLPL--LNSSLNPFIYCFFHKDFQKGLKHIL 1270
V +T L L+ +LGN LV + LRK TNYF++SLA DLL ++++P ++ + G+ C + ++D + T SI HL I +DR+ AI +P Y + I +ML WV F+ NN+ L + F Y ++ ++ F +P L+M L Y R++ A HA +I+ + SS++ HST + E KA K +C++ G F +CW P + ++D FI VP ++ +L L +NS LNPF+Y F +K F++ IL
Sbjct: 21 VLLTFLSTVILMAILGNLLVMVAVCWDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGAIELVQD-IWIYGEVFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKMTPLRIALMLGGCWVIPTFISFLPIMQGWNNIGIIDLIEKRKFNQNSNSTYCVFMVNKPYAITCSVVAFYIPFLLMVLAYYRIYVTAKEHAHQIQMLQRAGASSESRPQSADQHSTHRMRT----ETKAAKTLCIIMGCFCLCWAPFFVTNIVDPFIDYT----VPGQVWTAFLWLGYINSGLNPFLYAFLNKSFRRAFLIIL 327
The following BLAST results are available for this feature:
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