Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073448 ID=TCONS_00073448|Name=TCONS_00073448|organism=Clytia hemisphaerica|type=transcript|length=2908bpRun BLAST on NCBI protein sequence of TCONS_00073448-protein >TCONS_00073448-protein ID=TCONS_00073448-protein|Name=TCONS_00073448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=375bp MIDEDSNLTEPEKDDAGSCDEGGNTIEISARLISNKNQDSEKEDENEGTARun BLAST on NCBI transcript from alignment at scaffold_92:188217..220131+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073448 ID=TCONS_00073448|Name=TCONS_00073448|organism=Clytia hemisphaerica|type=transcript|length=31915bp|location=Sequence derived from alignment at scaffold_92:188217..220131+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_92:188217..220131+ >TCONS_00073448 ID=TCONS_00073448|Name=TCONS_00073448|organism=Clytia hemisphaerica|type=CDS|length=16920bp|location=Sequence derived from alignment at scaffold_92:188217..220131+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00073448 vs. Swiss-Prot (Human)
Match: BRM1L (Breast cancer metastasis-suppressor 1-like protein OS=Homo sapiens GN=BRMS1L PE=1 SV=2) HSP 1 Score: 225.328 bits (573), Expect = 1.105e-65 Identity = 115/276 (41.67%), Postives = 182/276 (65.94%), Query Frame = 3 Query: 324 AETRKTQYVTDMSDLEKQFSDLKEQLYKEQISQIESQLKEVNSSEAKEYTGPLKQIEQECIIRTEVAWQLKHYRTINLENKLQCELQAAEQHFQNQERQVYDTIASDFEDKLKKVEEERHTSEMYSGNTQDLWCEDTFRSRKKRNKGMEIHVPEKRKKPATVTGPYVIYMLNEMDILEDWAAIRKAKSELA-RRKALELSSQDRDPLITARYEDGKFFYENEWFQKGDSVVLDNRIDSPVQVTIAGINTGEVWVSKTDGVKCKLYIAQFQKGKYVI 1148 E R+ + + +MS+LEKQF+DLK+QLYKE++SQ++++L+EV + +A EY PL +++ IRT+VA + +++NK +CE+QA+ QH ++++ +YDT+ S+ E+K++++EE+RH+ ++ T +LW D +SRKKR P+K KKP V+GPY++YML ++DILEDW IRKA + L R E + L +AR E+G+ +Y+ EW+ +G ++ +D + + P I IN EVW + DG K KLYI+Q QKGKY I Sbjct: 54 CERRRMECLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVAGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDI----TSELW-NDELQSRKKRKDPFS---PDK-KKPVVVSGPYIVYMLQDLDILEDWTTIRKAMATLGPHRVKTEPPVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVITTINHDEVWFKRPDGSKSKLYISQLQKGKYSI 320 The following BLAST results are available for this feature:
BLAST of TCONS_00073448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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