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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073076 ID=TCONS_00073076|Name=TCONS_00073076|organism=Clytia hemisphaerica|type=transcript|length=648bp cAGAAAAATGAATTGtaatattttaagaaaagtGACTTTGTCAACAAGAA TGATGTCCACAGTGTCAAAACGTTTAGAAGGAAAAGTTGCAATAGTAACT GCATCAACAGCTGGAATCGGCTATGCAATTGCAGAGGGGTTAGCAGAAAA TGGTGCTAAAGTTGTCATTAGTAGTCGTAAAGAGAAAAATGTAGAAGAAG CACTGCAACAATTGAAATCAAAAGATTTGGAAGTTTCTGGATGTGTTTGC CATGTTGCAAAAGAAGGCGATCGGACAAAGCTCTTAGAAGAGGCATTAAA ACAATATGGACAACTTGATATTTTGGTGAACAATGCAGGAATCAGTCCAG CTTTTGGTCCACTGCTCAAGACAACCTCTGAGCAATGGGACAAAATCTTC ACAACCAATGTCAAAGCAGGATTTCAAATGACACAAGAAGCTATGCCTCA TTTAAATAAAACTAAAGGATCAGTTCTGTTCAACTCTTCGATCACAGGAT ATGTGCCATTCCCTATGATTGGGGCATATTCAATCTCAAAGACAGCTTTA TTAGGTTTAATCAAAGCATTAGCTACGGAATGTGGACCTACAGGGGTTCG GGTTAATGGAATTGCTCCTGGAATCATTGAAACCAACCTCAGTGAAAT Run BLAST on NCBI transcript from alignment at scaffold_86:1286152..1290740- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073076 ID=TCONS_00073076|Name=TCONS_00073076|organism=Clytia hemisphaerica|type=transcript|length=4589bp|location=Sequence derived from alignment at scaffold_86:1286152..1290740- (Clytia hemisphaerica) CAGAAAAATGAATTGTAATATTTTAAGAAAAGTGACTTTGTCAACAAGAA
TGATGTCCACAGTGTCAAAACGTTTAGAAGGAAAAGTTGCAATAGTAACT
GCATCAACAGCTGGGTAAACATTATTTTCATATTTTTTGATCTCTAAAAA
AGTAATTAAAAAAAGAAACCTTTGAACAAGAATACAATTTTTTGACCCTT
TGTGATTATTGGCAAACATTGATGAGAATACTCTCTTATTCTACCAGATT
CTACTTGATGGTAATTTGGCATGCCTTGGGTTTTAAAAATTCTTCACAAT
TTTACTTTCATTAGAAACTAGAAATTTAACTTTTATTCAAATACAGAATC
GGCTATGCAATTGCAGAGGGGTTAGCAGAAAATGGTGCTAAAGTTGTCAT
TAGTAGTCGTAAAGAGAAAAATGTAGAAGAAGCACTGCAACAATTGAAAT
CAAAAGATTTGGAAGTTTCTGGATGTGTTTGCCATGTTGCAAAAGAAGGC
GATCGGACAAAGCTCTTAGAAGAGGTGAAATTCAATACCTAAAATAAAGT
CAATTTTTTTTCATATTTGAACGTGTGACTGTATATTCATCTTCTTAAGA
AATTTCCATGTTAAATTTTTATCACCTCTAGCAAATACTTTTTTTATAGG
CATTAAAACAATATGGACAACTTGATATTTTGGTGAACAATGCAGGAATC
AGTCCAGCTTTTGGTCCACTGCTCAAGGTATGTCCATTTCAAAGTTGTTT
AATAATTTCTTTTTATTTATTAGTTCAGAAACATATCTGAATGTTTTGAA
CATTACCGAACGTTCCAATCAAGTTAATTATTAATCTTTATAGCTCAAAG
GGTTGTTTGCAAGCGTTCAGGAATACTCTTGACCGTTCTGCAACATTTCT
GAGCTTTTGGGAACAATCAAGAACTTTTCAGAGACATGTCCTTACAATCT
GTGAAAACGGCTAGTATGTAGGTTATGCAAAACAAGTCAATTTCTTATCT
CATCATTGTTTTTTATATTGTTAGAGTTGCTCTTTCCTTTAGACAACCTC
TGAGCAATGGGACAAAATCTTCACAACCAATGTCAAAGCAGGATTTCAAA
TGACACAAGAAGCTATGCCTCATTTAAATAAAACTAAGTATGTAAATCTA
ACTGGAGAATACTCTCGTCAATATGAATGAATGAAGCAACATTTAAAATC
AGCGGAAATCAATTCATTTCACTAGATTCATTAGTTTGTCTTGATGCTGT
TTTAAAATGAGAAGATAAATTTTAAAAGTTTCCCGTTCAAAACAATAAAA
TAATCAATTTGTTTTATAGAGGATCAGTTCTGTTCAACTCTTCGATCACA
GGATATGTGCCATTCCCTGTAAGTCCAGAGAAACCATATTCTACCAAATC
AGTTGGGTGGTGGCAGGGAAGGCAGAGAGTAGCAAACACCCCCTCCCCCA
GAGGTAGAATTTCTCTGGGCGTTATAACTATAAGGCATGGGATTGCTAAA
TTTGGTGCTCCTTTTGCCCCCCCTCTGAAATTAGCAGTTAAGCTAAATAG
GGGAATGATGGTCTAAGCATTTTTATGCTTACTACTTTGCTCATGTCATT
ATTCCATAGACTTTTATATGAAGTTCCAGTTTTCCCAAATTTTGGTTGAC
TCACTTCGCTACTCTACACTATTGAGATCATAATTATCAAATTTATTGGA
AGAGTAAAACATAATTTGCTGATTGTAATTATTTTTTATCTTTCCTTAGA
TGATTGGGGCATATTCAATCTCAAAGACAGCTTTATTAGGTTTAATCAAA
GCATTAGCTACGGAATGTGGACCTACAGGGGTTCGGGTTAATGGAATTGC
TCCTGGAATCATTGAAACCAACCTCAGTGAAATGGTAGGTTTGATAATGC
TTTCATTGATTCACTCACTCAAAAATTAACAATACACTCACTCAAAAATT
AACAATGCCTTATTACACGAATATTACGAGACAAGTATTCAACGGCCTTG
AAATTTTCACGATCTGAAATTAACACAAATTTTTCTGCTTTTTCGAGGAA
ACAGCGGCTGGTTTCAATTTAGGGGGTTTTTATTAACACGAAATTTTTCA
ATTATTAGCAAATTCAATTCAATTCAATTAGCAAAATCAGATCAATAGCA
CTTATACCCCCATTTTTTTGATTTTTATCTGGAGTACCCACCCCCTAGCC
CTACTTATTCCACCCCCCTACAATTAAGCACACAACAAGAGTATATAAAT
TGGTTACAACTCTTTTAGGCTATTCTTCAAACACGAACAATATCTTTGTT
TCGACGCTGACTTACGCGAAATTCTCCTTTTTTTATAGCTTACTACAACA
GATTCAATCAGTCAAACTATTTTAAGTAACACCCCACTTGGAAGGTAATT
TGTCTCTAACCGTCTTTATTTTGTTTTAATTATTTTTTTTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACATAATT
TTAGAACAGAATAGATTCACTCATTACCAAATGCTATCACAGAAAAAATG
CTTTTGCTTCAGGCTTGATCAAAAATAAAACTTGAAAATATCGATAGAGT
CCAAAATAAACAAACTTCAAAGTCATTTAAACTTATTACTCATTTACAGT
CATTATACTCTAAAGCTAAAACAAATCCAATTGAAACCTGTTTAGACTGA
TATATGTACCCCGGGGTATTTTCTAGCTATAAGGGCAAAAATTAGGAAAG
TTTTGCTGTCATTTTGATATGGATACCAACTTTCTGAATCATANCTATGA
ATGAATGAAGCAGCATTTAAAATCAGCGGAAATCAATTCATTTCACTAGA
TTCATTAGTTTGTCTTGATGCTATTTTAAAATGACAAGATAAATAGTTTT
CCATTCAAATCAATAAAATAATCAATTTGTTTTATAGAGGATCAGTTCTG
TTCAACTCTTCGATCACAGGATATGTACCATTCCCTGTAAGTACAGAAAA
ATCATATTCTACCCTATCAGTTGGGTGGTCGCAGGGAAGGCAGAGAGTAG
CAAACACCCCCTAGAATTTTTCTGGGCGCTATAACTATAAGGCATGAGAT
TGCTAAATTTGGTGCTCCTTTTGCCCCCCCCTGAAATTAGCAGTTAAGCT
AAATAGGCGAATAATGGTCTAAACATTTTATGCTTACTTACTTTGCTCAT
GTCATTATTCCATAGACTTTTATATGAAGTTCCAGTTTACCCAAATTTTG
GTTGACTCACTACGCTACTCTACACTATTGGGATCATAATTATCAAATTT
ATTGGAAGAGTAAAACATAATTTGTTGATTGTAATTATGTTTTATCTTTC
CTTAGATGATTGGGGCATATTCAATCTCAAAGACAGCTTTATTAGGTTTA
ATCAAAGCATTAGCTACGGAATGTGGACCTACAGGGGTTCGGGTTAATGG
AATTGCTCCTGGAATCATTGAAACCAACCTCAGTGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073076-exon-scaffold_86-1575043694:1290627..1290740 | TCONS_00073076-exon-scaffold_86-1575043694:1290627..1290740 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1575043694:1290217..1290394 | TCONS_00073076-exon-scaffold_86-1575043694:1290217..1290394 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1575043694:1290014..1290091 | TCONS_00073076-exon-scaffold_86-1575043694:1290014..1290091 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1575043694:1289604..1289698 | TCONS_00073076-exon-scaffold_86-1575043694:1289604..1289698 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1575043694:1289373..1289421 | TCONS_00073076-exon-scaffold_86-1575043694:1289373..1289421 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1575043694:1286152..1286285 | TCONS_00073076-exon-scaffold_86-1575043694:1286152..1286285 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1510915933:1290627..1290740 | TCONS_00073076-exon-scaffold_86-1510915933:1290627..1290740 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1510915933:1290217..1290394 | TCONS_00073076-exon-scaffold_86-1510915933:1290217..1290394 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1510915933:1290014..1290091 | TCONS_00073076-exon-scaffold_86-1510915933:1290014..1290091 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1510915933:1289604..1289698 | TCONS_00073076-exon-scaffold_86-1510915933:1289604..1289698 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1510915933:1289373..1289421 | TCONS_00073076-exon-scaffold_86-1510915933:1289373..1289421 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1510915933:1286152..1286285 | TCONS_00073076-exon-scaffold_86-1510915933:1286152..1286285 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1491911889:1290627..1290740 | TCONS_00073076-exon-scaffold_86-1491911889:1290627..1290740 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1491911889:1290217..1290394 | TCONS_00073076-exon-scaffold_86-1491911889:1290217..1290394 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1491911889:1290014..1290091 | TCONS_00073076-exon-scaffold_86-1491911889:1290014..1290091 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1491911889:1289604..1289698 | TCONS_00073076-exon-scaffold_86-1491911889:1289604..1289698 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1491911889:1289373..1289421 | TCONS_00073076-exon-scaffold_86-1491911889:1289373..1289421 | Clytia hemisphaerica | exon |
TCONS_00073076-exon-scaffold_86-1491911889:1286152..1286285 | TCONS_00073076-exon-scaffold_86-1491911889:1286152..1286285 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_86 | supercontig | scaffold_86:1286152..1290740 - |
Blast
BLAST of TCONS_00073076 vs. Swiss-Prot (Human)
Match: DHRS4 (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=3) HSP 1 Score: 191.045 bits (484), Expect = 2.596e-59 Identity = 101/206 (49.03%), Postives = 137/206 (66.50%), Query Frame = 2
Query: 41 STRMMSTVSKR---LEGKVAIVTASTAGIGYAIAEGLAENGAKVVISSRKEKNVEEALQQLKSKDLEVSGCVCHVAKEGDRTKLLEEALKQYGQLDILVNNAGISPAFGPLLKTTSEQWDKIFTTNVKAGFQMTQEAMPHLNKT-KGSVLFNSSITGYVPFPMIGAYSISKTALLGLIKALATECGPTGVRVNGIAPGIIETNLSE 646
S RM S+ R L KVA+VTAST GIG+AIA LA++GA VV+SSRK++NV++A+ L+ + L V+G VCHV K DR +L+ A+K +G +DILV+NA ++P FG ++ T E WDK NVKA MT+ +P + K GSV+ SSI + P P Y++SKTALLGL K LA E P +RVN +APG+I+T+ S
Sbjct: 16 SVRMASSGMTRRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSR 221
The following BLAST results are available for this feature:
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