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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97309_cuf2 >transcript:BL97309_cuf2-protein ID=transcript:BL97309_cuf2-protein|Name=transcript:BL97309_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=217bp
DHGNWGAWALWTTCSATCGTGFTARQRECNNPAPSNGGNFCEGSATEGVQ CNMGSCNAHLCENITGSVYDECGPACPRSCEDVSACVWSCQPGCYCPSGL VLNENRTACVDTSACSCLDLETDTRHPPDTVITKDCNQCVCKNGRFSCTA EQCEVPGGWCYWGAWSMTSCQGSCDSMQNRQRVCACPAPTSQEGMCADIH SLEDGYGVQQEQAPCEP Run BLAST on NCBI mRNA from alignment at Sc0000038:1597547..1599837+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97309_cuf2 ID=transcript:BL97309_cuf2|Name=transcript:BL97309_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2291bp|location=Sequence derived from alignment at Sc0000038:1597547..1599837+ (Branchiostoma lanceolatum) AGACCACGGTAACTGGGGCGCCTGGGCATTGTGGACCACCTGCTCTGCCA
CCTGCGGCACCGGCTTCACGGCACGCCAGCGGGAATGTAACAACCCAGCG
CCGTCCAACGGCGGGAACTTCTGTGAGGGCTCCGCCACAGAAGGGGTGCA
GTGTAACATGGGGAGCTGTAATGGTAAGGATAAATCCATGTGCAGAATGG
AAAATGTAATGATCAAAGTAAAAGTGTGGAAATATCTTGATAGTTCCAAA
CAATAATTTGTTTACTGTGAACGACAAAATGTACTGAGGGTAAAAGTCTG
TCATGGCTTTACAGAGTTCACCTCAAGGCAGGATTTTCCGGGGTCAGAAT
TGATGTCATTTAATGACCAGCTGCTGCCATACCATACCATACCTGTAAGA
GTGAGAGTGAGATGTTAAACTGTACTGCCATAAATGGTTATACTGACTGG
ATGATCAATGCAGATTTATTTAAAATACAAGGCATCTGCCCTGCAAATTC
AATCATTTTGACTGCTGTCATTTAATTTATATCAACTTCAACAACTTTTA
GACTACTACAGTAACTGTGGCATCTACTTCAATATCAAACCCTTTTAATT
TGTCTTGATTGTGTCCAATATTAGACATTTCAGCCAGACTCATCCTCTTT
ACTTGATATAGGTACTAAATGATGTTTATATTTCTGCACAATTTAGCCCA
TTTGTGTGAGAATATCACGGGTTCTGTGTACGATGAATGCGGCCCTGCCT
GTCCCCGATCTTGCGAGGATGTCTCCGCCTGTGTGTGGTCGTGCCAGCCG
GGCTGCTACTGTCCCAGCGGGCTGGTTCTGAACGAGAACCGGACAGCCTG
CGTGGACACGTCGGCCTGCAGCTGTCTGGACCTGGAGACCGACACCAGAC
ATCCACCAGACACTGTCATCACTAAGGACTGCAACCAATGGTAGCCATCA
TGCAAATGTCATATTATATAATATTTCCCTTGCTAGATTTCGTTCCTTTC
CTACAATTCCTCAATTAAGAAACTGATATATTATGAGCGTAAAAGATCTA
GAAACATATTGGAAAGTGTGGTAAATTACATGTTCAAGTTCTGTTATATC
ATTGTTGATAGGGGTTCTCATTTCTTTTTGTGATCATAGACCATGTTTCC
TGATTTTACATTTACAGTTTTGTTCTTACACATATGTGCCACTTATTTTG
TGTGTTTGCCATGGGTTTTTTTTCTATGGAGAATATCTTCTGAAGACTAA
TTAGAAAAAAAAGAGTTGGGGAAAAAAATGTCCACTGTCATCCTCAAGAG
TCATAACCAATGATGGCCATGCAACATTGCACATTTATTGAGCCAGCATG
ACACAGCAGGAAAATGGCTTGCTTAATTCTTCTGACGTTTTTCATCATGT
TTTCTACAGTGTCTGCAAGAATGGCAGGTTTTCCTGCACAGCAGAACAGT
GTGAAGGTATTGTATGATTTTCTCTGCTGTTATACTTATTGATATCTTCC
ATCTGCCACTTCAAAAACAAGATTTTGCAATGACACCCCAAAAGACAATA
TGATAGTGCGTCCAACACAGAAGTGTGCATTTGTGCGCATGTGTGAGTTT
GATATCACCCAATACTCTGTTAACATGTGAAATTAAGTAAATATGATAAA
CTTCTTCCTAAAGCTTACTTAATGGCCATAAGTTTTAAAAGTAGTTAGCA
CTTACCCGTTTTGTGATATTATTTTTTTTATTTGCAAGTTCATGCCGAAA
GGCTAATTACAAATACGTGGACTTGGGAAACATGCCGCATTCCCGTTGTT
GCTTACTGATAGCATGAAGTACTCGCCAGACGATGAACACTGCGCTACCA
ACAAAAACTACAAAGAACTGGCTTTCAATGAATCAAATGAAAAAAGATTA
TACGATGTCACATTTCCTATACATAGCCGAATACTATATTACATAGTGAT
AGCCACAAAAATCTAAAGCCAAAACTAAGCAGAACTTATGATTTGCACCT
TATTTCTCGGACTATTTTGCTGTACGGTCAGATTTAATTCCAATCCAGAG
CCTCAAGAGATACTGAGAAAGTAACCAATAACCTCTGACCCTTTACCCAC
AGTTCCAGGTGGCTGGTGTTATTGGGGTGCGTGGTCTATGACGAGCTGTC
AGGGCTCGTGTGACTCGATGCAGAACAGGCAGCGTGTGTGTGCCTGTCCC
GCGCCCACCTCACAGGAGGGGATGTGTGCAGACATCCACAGTCTGGAGGA
TGGTTATGGGGTTCAACAGGAACAGGCACCTTGTGAGCCAT Coding sequence (CDS) from alignment at Sc0000038:1597547..1599837+ >transcript:BL97309_cuf2 ID=transcript:BL97309_cuf2|Name=transcript:BL97309_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2604bp|location=Sequence derived from alignment at Sc0000038:1597547..1599837+ (Branchiostoma lanceolatum) GACCACGGTAACTGGGGCGCCTGGGCATTGTGGACCACCTGCTCTGCCAC CTGCGGCACCGGCTTCACGGCACGCCAGCGGGAATGTAACAACCCAGCGC CGTCCAACGGCGGGAACTTCTGTGAGGGCTCCGCCACAGAAGGGGTGCAG TGTAACATGGGGAGCTGTAATGCCCATTTGTGTGAGAATATCACGGGTTC TGTGTACGATGAATGCGGCCCTGCCTGTCCCCGATCTTGCGAGGATGTCT CCGCCTGTGTGTGGTCGTGCCAGCCGGGCTGCTACTGTCCCAGCGGGCTG GTTCTGAACGAGAACCGGACAGCCTGCGTGGACACGTCGGCCTGCAGCTG TCTGGACCTGGAGACCGACACCAGACATCCACCAGACACTGTCATCACTA AGGACTGCAACCAATGTGTCTGCAAGAATGGCAGGTTTTCCTGCACAGCA GAACAGTGTGAAGTTCCAGGTGGCTGGTGTTATTGGGGTGCGTGGTCTAT GACGAGCTGTCAGGGCTCGTGTGACTCGATGCAGAACAGGCAGCGTGTGT GTGCCTGTCCCGCGCCCACCTCACAGGAGGGGATGTGTGCAGACATCCAC AGTCTGGAGGATGGTTATGGGGTTCAACAGGAACAGGCACCTTGTGAGCC AGACCACGGTAACTGGGGCGCCTGGGCATTGTGGACCACCTGCTCTGCCA CCTGCGGCACCGGCTTCACGGCACGCCAGCGGGAATGTAACAACCCAGCG CCGTCCAACGGCGGGAACTTCTGTGAGGGCTCCGCCACAGAAGGGGTGCA GTGTAACATGGGGAGCTGTAATGCCCATTTGTGTGAGAATATCACGGGTT CTGTGTACGATGAATGCGGCCCTGCCTGTCCCCGATCTTGCGAGGATGTC TCCGCCTGTGTGTGGTCGTGCCAGCCGGGCTGCTACTGTCCCAGCGGGCT GGTTCTGAACGAGAACCGGACAGCCTGCGTGGACACGTCGGCCTGCAGCT GTCTGGACCTGGAGACCGACACCAGACATCCACCAGACACTGTCATCACT AAGGACTGCAACCAATGTGTCTGCAAGAATGGCAGGTTTTCCTGCACAGC AGAACAGTGTGAAGTTCCAGGTGGCTGGTGTTATTGGGGTGCGTGGTCTA TGACGAGCTGTCAGGGCTCGTGTGACTCGATGCAGAACAGGCAGCGTGTG TGTGCCTGTCCCGCGCCCACCTCACAGGAGGGGATGTGTGCAGACATCCA CAGTCTGGAGGATGGTTATGGGGTTCAACAGGAACAGGCACCTTGTGAGC CAGACCACGGTAACTGGGGCGCCTGGGCATTGTGGACCACCTGCTCTGCC ACCTGCGGCACCGGCTTCACGGCACGCCAGCGGGAATGTAACAACCCAGC GCCGTCCAACGGCGGGAACTTCTGTGAGGGCTCCGCCACAGAAGGGGTGC AGTGTAACATGGGGAGCTGTAATGCCCATTTGTGTGAGAATATCACGGGT TCTGTGTACGATGAATGCGGCCCTGCCTGTCCCCGATCTTGCGAGGATGT CTCCGCCTGTGTGTGGTCGTGCCAGCCGGGCTGCTACTGTCCCAGCGGGC TGGTTCTGAACGAGAACCGGACAGCCTGCGTGGACACGTCGGCCTGCAGC TGTCTGGACCTGGAGACCGACACCAGACATCCACCAGACACTGTCATCAC TAAGGACTGCAACCAATGTGTCTGCAAGAATGGCAGGTTTTCCTGCACAG CAGAACAGTGTGAAGTTCCAGGTGGCTGGTGTTATTGGGGTGCGTGGTCT ATGACGAGCTGTCAGGGCTCGTGTGACTCGATGCAGAACAGGCAGCGTGT GTGTGCCTGTCCCGCGCCCACCTCACAGGAGGGGATGTGTGCAGACATCC ACAGTCTGGAGGATGGTTATGGGGTTCAACAGGAACAGGCACCTTGTGAG CCAGACCACGGTAACTGGGGCGCCTGGGCATTGTGGACCACCTGCTCTGC CACCTGCGGCACCGGCTTCACGGCACGCCAGCGGGAATGTAACAACCCAG CGCCGTCCAACGGCGGGAACTTCTGTGAGGGCTCCGCCACAGAAGGGGTG CAGTGTAACATGGGGAGCTGTAATGCCCATTTGTGTGAGAATATCACGGG TTCTGTGTACGATGAATGCGGCCCTGCCTGTCCCCGATCTTGCGAGGATG TCTCCGCCTGTGTGTGGTCGTGCCAGCCGGGCTGCTACTGTCCCAGCGGG CTGGTTCTGAACGAGAACCGGACAGCCTGCGTGGACACGTCGGCCTGCAG CTGTCTGGACCTGGAGACCGACACCAGACATCCACCAGACACTGTCATCA CTAAGGACTGCAACCAATGTGTCTGCAAGAATGGCAGGTTTTCCTGCACA GCAGAACAGTGTGAAGTTCCAGGTGGCTGGTGTTATTGGGGTGCGTGGTC TATGACGAGCTGTCAGGGCTCGTGTGACTCGATGCAGAACAGGCAGCGTG TGTGTGCCTGTCCCGCGCCCACCTCACAGGAGGGGATGTGTGCAGACATC CACAGTCTGGAGGATGGTTATGGGGTTCAACAGGAACAGGCACCTTGTGA GCCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000038 | genome | Sc0000038:1597547..1599837 + |
Properties
Property Name | Value |
Transcript id | BL97309_cuf2 |
Biotype | protein_coding |
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