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Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000807:28248..34777+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >Blg00261.0 ID=Blg00261.0|Name=Blg00261.0|organism=Branchiostoma lanceolatum|type=mRNA|length=6530bp|location=Sequence derived from alignment at Sc0000807:28248..34777+ (Branchiostoma lanceolatum) GTCGACAGCTCTACATCACAATGAGGTGTGCGCTTCTCCTTGGGGTTTTG
GCTGTATCCTTGGTAGCTTGTGAAGGTAAGTAGTAAGAACTTCCACGCGT
ACATTTCTACCATATAATATTCTCATTAGGAGCAAATGAATTTTAAACGC
AGCAGGTTTCAACGGAAGAGGGTGGCGGTGTCTCTAAGTACATGTATCCA
CAAATCTAAAGAAAAAAAAATTGTACGACAAATGAGTTCACCGAAGAGCA
TTTGTTAGTTTGGAAAAGCTTTCCTTCTCGCATGTTAGTTAATTAGTAAC
ATTTTGCAACATATTCCTGTGACAATAGAATGGTTACATGCATTGGAATT
TTAAATGTAGCATATGTTAGCCATAGAAGCCAATAAGTAAAACGAATTAC
AAGGTCGAGATTCAGATGTACCGTCATAACAGTGTGTTGAACATGTAATG
AGGTCAAAATGTGTGAGTCTGTTTAATGTTTTTACCCTGAATCATTACAT
GAACAGATATGGAAGCTTTCTGTTTTACTTGCAAATTACTGTACTATTAC
TTGCGAATTACTGTTTTACTCGCGAATTACTTACTATGCGCATACTTAGG
ATATCATAGTAATGACTGTATATTTCTTTCTACAGGTGAAGAAGCCTACC
TGACTTCCCTCCAGGGATGGGCCTACTACAAGGTTCGCGCGTCAGGCACG
ATGACGTCATCCAACATCAAGAGCACGTGTGAAGCTGCTGGGTATGTCAT
GCCCTGTACCCATGAACCGACGTGTCAGTATATGCCCTCCACCTGTACAG
ACACAGGTCTGCTGGGCGTTGGATGTGGTTCTGCCCCTATGGACGACATC
TCACAGGTTCTGTGTGGAGACCATCCAGCACGATGCCCTGCAATGGAGGG
CTTATTTACTTGTTTCACCACCAGGCGAGGCGAGGCTGTCGGTGTCCAGC
CGACCACCAGGCCAGGTGCTTGGCTCAGCGGCGCAGACTTTAGTGATCAG
CACGCCCTTTGCGCAACGGGTGAGTAGATTTATGGCTATTTAACAACGCA
ACATCATAGATCAACGGATTTCGCCCCTTGTATTAATACCCCTCGAAAAT
GCAACCATGAGTATTGATGTCAATCCAGCATAACAACATCACAAAAAGCT
TTTACTAGTACATAAAAATAAATTGTGGGGCAGGGTCAATGTACCGTAAG
GATATAGATCATTCAACTAAACGTTGGCGCAAACTAATGTTTAATTGTAA
TGTTAAATTATTCATTCTTCGCTTCTATTACTTTCTTTTCACATGTCATA
TGTTCTATATCCTGTTTCGTAAGATATGACCATACCTTTGCTTAATTAAG
AACGGCATGCATTCTTCATGACGTTCGTGTCATAAACAGCTTGTTCCACA
TGTACGTGTAACGTTACAATACCGACAGTTATAGTCGTGATGTATATGGC
GTTTGAAAATGTGTCTTTTCTCTCAACTCTTTTACGATCTCCCTACAGAT
TTAGTTGACGAGTGTACTTCGGATCCCTGTCAACATGGCGGGACGTGCGT
CGACAAATACAGACACTACACCTGTCAATGTGTGCCTGGTTTCATCGGAG
ATAACTGTGAGAATGGTAGGATTGTTTCGTATCATATCTTTTCTTTCAGT
TTGTCGTTACTACGGAATCCTCTGAACATCAGTTACCATCTAACAAAAAA
TACCTACTAGGATATTTACCTACAAAACGCTTATCTGCTCATGGTGTGCT
CAACTTTAGTTACTGGTGTACTTGTACTGCTGAATGTGTGAAAATAATCT
CTATATGCAAACATTTATTGATATCGATTGATTGATGATTGCCTATTGTA
AATGCGATTAAATATCATCGTTGCTTACATCTTGGTTCAGATCTCCTTTC
AGTATTTTGTTGACAATGAAGGTAAGATGATATCCCAGCGGTACAAACTG
GAGGAAGATCATGACTGAAGGAAGATTATAATGATATACTGAAGATTATA
ACGAAATAATCATGCATCAAAAATTTCTATGCAAAATTATCAAAACCCTA
CCTAAAACAAACAACTCCGGCATATCGTCTCTAGCATTTCTAACGCATTC
GTGCGGTAACGTCTCTTTTCTAGACATCGACGAATGTCTCGAGGGTGCCT
GTTTGAACGGTGCCACCTGTCTGAACACACCTGGGAGCTACAGCTGCACC
TGCAGAGATGGCTGGACTGGTCGGAATTGTGAAACAGGTCGGGGAACTAT
ATTGAGGATCTTTTACATCTAGTTATGATAATTGCATTATGCTCAATGAT
CAAACGATATGACAAAGAAGTTCAGATTACAATTTAGAAGAAAGAAGACA
GCAAGTTGTCAAAGCTTTCAAAGGTTTTTCTGCAAAGATAGCATAATAAA
CCACTTGACATCCGCTTGAATGCAACAAATTTCATTCAGCCTCATCATCA
TTGATTGTACATAGCAAATTCTAATTTGCTGCTTTATAACTGGCTGATAA
CGCTGAGATTAATGGGGGTCCAGAGGTTCGTGAATACAGTAGGGCCAGGA
CTAATGCATGTATCTCTGCTCCTCTCCCCTAGTTCTGAACTCCGACAAAT
GCTTCCAGCTGTCAGTGGAGCCCAAAACACACCTTGCGGCCGAGGGACAA
TGCGCCACTCTTGGAGGAACTCTGGCCGGGCTGAAAACCGTGGCTGAACA
GGAGTTTCTAGCCAACGAGATCCGCCTGGGGACGAACGTGTCCCACTGGA
TCGGTCTCAAGAACGGACCGGAACAGTTCCTGTACACCGACTTCTCCACC
ATGAGCCGCAAGTTTCTTGATATAATATTCTAGTTGTGTATGTATGTATG
TATGTATGTATGTATGTATGTATGTGTGTGTGTGTGCGTGTGTGTGTGCG
CGCATGTGTGTGTGTGTGTGTGCGCATGTGTGTGTGAGTGTGTGTGTGTG
TGTGTGTTTGTGTTTGTGTGTGTGAACGTGTTTGAATGTGCGTGCGCGTG
TGAATGTGTGTGTGAATGTGTGTGTGGTTGTGTCATTTGTCTGATTGCTC
GGTCGGTTTGTAGTTCCCCTGTTCGTTGTCTAACTTCCTCACCATTTGCA
CCACAGCTCAACTGCGCTGGATGTACGGAAAGCCAGAGAACCTGTGTGCC
CTGCTGGACAAGAACGGCAACTACGACCTGAACGCGGACTTCTGTACGGA
ACAGTACAACTACGTCTGCGAATCCGGTGAGTTAAGTAATTTGAAATAAA
GCAGATATCCACGTATCAAGATCATCTGTATCAAGACCAGTTGGAAGCAC
CGTTGTTCTGTTAACTGTTAACAAACCTTACATGTTAATAAGCCGTACAT
GTAAAATACGGCTAATATCAGAGTTGCAAAAGCAACAATGCTGGCAAACT
GTACTTTTCAATCTTCTTTGGCAAACGTTTTCCGTTCTTTTACACGTTTA
GGGTCGAAAAGCATAGTTTGAGCTACGTTATCATTAGTAAAGATACCTGA
TATATGTGACAAATTTCAGAGCAATCACTTCCCCGCTGTCTGTCTTAGAA
ATAATTTAGTGCATAGGGCCCGTTATCATGTAATGTATTGACCAAAATAT
GTCCTTTTCAGATGTCGTCACCTGCAAGCAAAATGTCTGCCTGAACGGGG
GCAACTGCACCTCCTGCTTCAACGAGAGTTACGCTTACTGCGACTGCGCA
CCAGGCTTTGTAGGAGACCGCTGTGAGATCAGTAAGTGCCATCCCCACAC
ATGTACACAACACTTGGTAGTAGATGACGCAAGGATCTTGGATAATGTCA
ATCATATCTCTTTTTTTCCAAATCAAAAGCTTCTGCTGAAACGTCAGAGG
TGAGACAAGCTTGTCCTATTGTGACATCATGTTACCAATGCTGTTTTTGT
CCTTGGTGCTGAACGAGAAGCCAGTTCTTGACGCTTGTCTATTTTTTATC
TATAGCGTAAACTTTCTCGATAAATATCTCGCCTTTACAGATATCGACGA
GTGCGCCTCGGATCCCTGTCAATATGGCGGCACCTGTGTGGACGGAGTTA
ACTCCTACACCTGTCAGTGTGTGCCTGGCTTCATCGGAGACGACTGTGAG
AATGGTATGAAACAGTTATTTGTGAATATGTTTTCCTGTCCACTGATACC
CTTCTGTGAAGTTAAAATCTGTAAACNAAACAGTCAGCGGTGAGGATGCG
TTTCTCTTGCTAATGATATCCCTGCACAGCAAAGCAACCTTTTACTGCCT
TCTTTGAATATAACTCCTGTTCTGAAGCGAAGTTTACTGTAATGTCCAAC
TGAAAAATTGATCTTACACAAATTTTCGACTGTCAGACTCCAGTCTTTGT
CAGCGCTGTCCAAACTCCATCCCTTGACCAGTCCAGAATGTATCCTGATT
AGGCTATGTCCATGACGCCAATATTCAGCCAATCAAATCGCTCGCTCGGC
TATGACGTCATTTTACCGCCAGAGCTGGGTCACTCGATTTCAAGTGGATT
TTCTTCTTCTATCCCCTATTATTCATAGGCTCGATTTGGAGAGTCTAAGG
TTTGGGTAAGTCCAAATTTCGTTTGGGAAATTTAAGGTTTTTTGCTTCAG
AATGGTTTCATCCAACGGAAACACGGATGAACTTTCAAGATCATAACTCC
TGTTTTTTGTCCATATAGGGACTCCGCATAAAGAAGGGGAACTTGTCAAG
AGTCGCCATCTTGATGAGGCCACGTCTAACTCTTCCTTCAGCAACTCTAG
CTCACTGTTATGCTATTAGCAGACGTAGCAGTTATATATATGATGATAAA
AAGGCTTGAATATTNACGGCAACTACGACCTGAACGCGGACTTCTGTACG
GAACAGTACAACTACGTCTGCGAATCCGGTGAGTTAAGTAATTTGAAATA
AAGCAGATATCCACGTATCAAGATCATCTGTATCAAGACCAGTTGGAAGC
ACCGTTGTTCTGTTAACTGTTAACAAACCTTACATGTTAATAAGCCGTAC
ATGTAAAATACGGCTAATATCAGAGTTGCAAAAGCAACAATGCTGGCAAA
CTGTACTTTTCAATCTTCTTTGGCAAACGTTTTCCGTTCTTTTACACGTT
TAGGGTCGAAAAGCATAGTTTGAGCTACGTTATCATTAGTAAAGATACCT
GATATATGTGACAAATTTCAGAGCAATCACTTCCCCGCTGTCTGTCTTAG
AAATAATTTAGTGCATAGGGCCCGTTATCATGTAATGTATTGACCAAAAT
ATGTCCTTTTCAGATGTCGTCACCTGCAAGCAAAATGTCTGCCTGAACGG
GGGCAACTGCACCTCCTGCTTCAACGAGAGTTACGCTTACTGCGACTGCG
CACCAGGCTTTGTAGGAGACCGCTGTGAGATCAGTAAGTGCCATCCCCAC
ACATGTACACAACACTTGGTAGTAGATGACGCAAGGATCTTGGATAATGT
CAATCATATCTCTTTTTTTCCAAATCAAAAGCTTCTGCTGAAACGTCAGA
GGTGAGACAAGCTTGTCCTATTGTGACATCATGTTACCAATGCTGTTTTT
GTCCTTGGTGCTGAACGAGAAGCCAGTTCTTGACGCTTGTCTATTTTTTA
TCTATAGCGTAAACTTTCTCGATAAATATCTCGCCTTTACAGATATCGAC
GAGTGCGCCTCGGATCCCTGTCAATATGGCGGCACCTGTGTGGACGGAGT
TAACTCCTACACCTGTCAGTGTGTGCCTGGCTTCATCGGAGACGACTGTG
AGAATGGTATGAAACAGTTATTTGTGAATATGTTTTCCTGTCCACTGATA
CCCTTCTGTGAAGTTAAAATCTGTAAACCTGAGCAAAACTAATAATGTTC
TTGTTTACTATGAGCTGGCGTACTATCGGCTATACAGATATAGATTTCAG
AAGGTTAAGATACTAGGACAATCGTTGAAATTATTAAATGTAACTGTTAT
CTGTTTCAGATGTTGATCTCTGCATCAACAACCCCTGCCCACCCAACTGG
GGCTGCGATGACTTCGGCCACTACTTCATCTGCAACGGTGAGCGAAGAGA
AAATGTTTCATATCATAGCTGAGTCTTAAATAGTGACAAAAACGGTCTGG
GTCGTATTGTAAGACATGAGGTCATCAGTTGGCAATATCGCCTGAATGGG
ACAAGTCGTTGACGCTTACAAATGGTGTAGGGCTGTTTTTACTGTTACAT
CGATGAAGGTTAGACATCCAGATAATAAGATACGCTAAATATTGGATATC
ATTTTGGAATGGAAGTCATATCCAGTTGCTTGGGTAACTGTTTTTGACGA
ATCTTTACCGTTGTATTTCTCAGCACAGGGCGGCCACAGCAGCTGTTTAG
CTGATACATGATACATTTAAGTCCAGGGATTTCAATTTACAATTTTCTCT
GTGTTATTCTTCCCCAGGCTATGGACGCGCTGACCCGGGCCCGTACCGTT
GTGATAGTTTCTCCTGTCCGTCCGGCTGGTCCTGTCAGGACGTGGGGCAG
CTCTCCTTCATGTGTGGCGCACGCGTTTAG Coding sequence (CDS) from alignment at Sc0000807:28248..34777+ >Blg00261.0 ID=Blg00261.0|Name=Blg00261.0|organism=Branchiostoma lanceolatum|type=CDS|length=1326bp|location=Sequence derived from alignment at Sc0000807:28248..34777+ (Branchiostoma lanceolatum) ATGAGGTGTGCGCTTCTCCTTGGGGTTTTGGCTGTATCCTTGGTAGCTTG TGAAGGTGAAGAAGCCTACCTGACTTCCCTCCAGGGATGGGCCTACTACA AGGTTCGCGCGTCAGGCACGATGACGTCATCCAACATCAAGAGCACGTGT GAAGCTGCTGGGTATGTCATGCCCTGTACCCATGAACCGACGTGTCAGTA TATGCCCTCCACCTGTACAGACACAGGTCTGCTGGGCGTTGGATGTGGTT CTGCCCCTATGGACGACATCTCACAGGTTCTGTGTGGAGACCATCCAGCA CGATGCCCTGCAATGGAGGGCTTATTTACTTGTTTCACCACCAGGCGAGG CGAGGCTGTCGGTGTCCAGCCGACCACCAGGCCAGGTGCTTGGCTCAGCG GCGCAGACTTTAGTGATCAGCACGCCCTTTGCGCAACGGATTTAGTTGAC GAGTGTACTTCGGATCCCTGTCAACATGGCGGGACGTGCGTCGACAAATA CAGACACTACACCTGTCAATGTGTGCCTGGTTTCATCGGAGATAACTGTG AGAATGTTCTGAACTCCGACAAATGCTTCCAGCTGTCAGTGGAGCCCAAA ACACACCTTGCGGCCGAGGGACAATGCGCCACTCTTGGAGGAACTCTGGC CGGGCTGAAAACCGTGGCTGAACAGGAGTTTCTAGCCAACGAGATCCGCC TGGGGACGAACGTGTCCCACTGGATCGGTCTCAAGAACGGACCGGAACAG TTCCTGTACACCGACTTCTCCACCATGAGCCCTCAACTGCGCTGGATGTA CGGAAAGCCAGAGAACCTGTGTGCCCTGCTGGACAAGAACGGCAACTACG ACCTGAACGCGGACTTCTGTACGGAACAGTACAACTACGTCTGCGAATCC GATGTCGTCACCTGCAAGCAAAATGTCTGCCTGAACGGGGGCAACTGCAC CTCCTGCTTCAACGAGAGTTACGCTTACTGCGACTGCGCACCAGGCTTTG TAGGAGACCGCTGTGAGATCAATATCGACGAGTGCGCCTCGGATCCCTGT CAATATGGCGGCACCTGTGTGGACGGAGTTAACTCCTACACCTGTCAGTG TGTGCCTGGCTTCATCGGAGACGACTGTGAGAATGATGTTGATCTCTGCA TCAACAACCCCTGCCCACCCAACTGGGGCTGCGATGACTTCGGCCACTAC TTCATCTGCAACGGCTATGGACGCGCTGACCCGGGCCCGTACCGTTGTGA TAGTTTCTCCTGTCCGTCCGGCTGGTCCTGTCAGGACGTGGGGCAGCTCT CCTTCATGTGTGGCGCACGCGTTTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Blg00261.0-exon-Sc0000807-1570713199:28248..28322 | Blg00261.0-exon-Sc0000807-1570713199:28248..28322 | Branchiostoma lanceolatum | exon |
Blg00261.0-exon-Sc0000807-1570713199:28883..29266 | Blg00261.0-exon-Sc0000807-1570713199:28883..29266 | Branchiostoma lanceolatum | exon |
Blg00261.0-exon-Sc0000807-1570713199:29746..29862 | Blg00261.0-exon-Sc0000807-1570713199:29746..29862 | Branchiostoma lanceolatum | exon |
Blg00261.0-exon-Sc0000807-1570713199:30830..31054 | Blg00261.0-exon-Sc0000807-1570713199:30830..31054 | Branchiostoma lanceolatum | exon |
Blg00261.0-exon-Sc0000807-1570713199:31354..31473 | Blg00261.0-exon-Sc0000807-1570713199:31354..31473 | Branchiostoma lanceolatum | exon |
Blg00261.0-exon-Sc0000807-1570713199:31859..31978 | Blg00261.0-exon-Sc0000807-1570713199:31859..31978 | Branchiostoma lanceolatum | exon |
Blg00261.0-exon-Sc0000807-1570713199:32238..32351 | Blg00261.0-exon-Sc0000807-1570713199:32238..32351 | Branchiostoma lanceolatum | exon |
Blg00261.0-exon-Sc0000807-1570713199:34207..34284 | Blg00261.0-exon-Sc0000807-1570713199:34207..34284 | Branchiostoma lanceolatum | exon |
Blg00261.0-exon-Sc0000807-1570713199:34665..34777 | Blg00261.0-exon-Sc0000807-1570713199:34665..34777 | Branchiostoma lanceolatum | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000807 | genome | Sc0000807:28248..34777 + |
Properties
Property Name | Value |
GeneID | Blg00261 |
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