|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072916 ID=TCONS_00072916|Name=TCONS_00072916|organism=Clytia hemisphaerica|type=transcript|length=842bp TAGTGTTTAGATTGGTCCTGGTACCTAGCCAATGACATGCAGTTTTATAT TGTGGCACCTGTTATCCTCTACGTTATGTACAAGGTTGAGCAGAAATTCA AGCATTCCAAATATCGTATCATTGCAGTGAGTTCTGTCATCATCATTTTA TGCACAATATGTGTCATCATCAATGCTGCAATGGTTGGTGGATATGATTA CCCATCACTACTTATCAATGGAAACATCCCTGGTAATCCAAGGCAGAAGA GTTACCAAAAGAACCACGATAAGATATATACCAAACCGTACACCAGAATT AATCCGTACTTGGTTGGAATCCTTGTGGGATATTTATTGGCAAGGAAAGA TCAAATCAAAAGAACGCTTATCTACATCTTCTTATGGCTCGTAGCGTTCG GCCTAGGGTACGCCGTAGTTTACGGACCTTACGTGGAAGCGTACAAAGAA TTGCtcgattatctttccaacggttcAAATGTTATGTATGGTGCTTTCCA TCGATTGGTTTGGGCCATCGCAGTTGGATGGATCGTCTATGCGTGCCAGA ATGGTTTCGGAGGTTACATCAACAGTTTCCTGTCGTGGGGAGCCTGGGTA CCAATCAGTCGTTTAACATTTGCTGCATATTTGGTCCATCCTTTGGTTAT CTTTTTCTTCTACGGAATCAGTGAACGCCCTTATCATTACCAAGATAACA TGATTGTTTACAACATGTTTTCCAACATCTTTTGGGCATACGGATGTGCA TTCATTCTGGCTGTTACTGTCGAATATCCTTCAATGCAATTAGAAAAACT GCTCATTTCATGAGGATTATAAATCTTATCCGCCAAAAAGAG Run BLAST on NCBI protein sequence of TCONS_00072916-protein >TCONS_00072916-protein ID=TCONS_00072916-protein|Name=TCONS_00072916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MQFYIVAPVILYVMYKVEQKFKHSKYRIIAVSSVIIILCTICVIINAAMV GGYDYPSLLINGNIPGNPRQKSYQKNHDKIYTKPYTRINPYLVGILVGYL LARKDQIKRTLIYIFLWLVAFGLGYAVVYGPYVEAYKELLDYLSNGSNVM YGAFHRLVWAIAVGWIVYACQNGFGGYINSFLSWGAWVPISRLTFAAYLV HPLVIFFFYGISERPYHYQDNMIVYNMFSNIFWAYGCAFILAVTVEYPSM QLEKLLIS Run BLAST on NCBI transcript from alignment at scaffold_86:788296..792271+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072916 ID=TCONS_00072916|Name=TCONS_00072916|organism=Clytia hemisphaerica|type=transcript|length=3976bp|location=Sequence derived from alignment at scaffold_86:788296..792271+ (Clytia hemisphaerica) TAGTGTTTAGATTGGTCCTGGTACCTAGCCAATGACATGCAGTTTTATAT
TGTGGCACCTGTTATCCTCTACGTTATGTACAAGTAAGAAATTTTTGCCG
TGTAAAactaattcttttttattttattttggctgaaattttcagCTTAT
AACCTTGGTATGAAAATCAGAGCTTTTGAGTGACTCGGTGATgatgaaat
gtttttttgtaCTCTTGTATTTTGGGCACGTGGACCAGATTCACAATTTG
cacaactttttttatttgttcaaTTCCTAATCGTCTTTAAACATGGTAGA
GTAGAAATTCAAAGTAGGTTTTTGTTAACGCCTTTTGAACACGATTCCCA
ACCTTTATGACATCATTTATCCCAAAATTTATAGATTTGActcgctgtct
ttttttgatattcttccaaagaagaaaaaaatacgaaattttgaattacc
CTCTTCAACTCGGaacgaaaaatacaaaaatagcaCAACACTTTCATCTT
ATGTATGGGACCTAAAATCCGCTGGAAAAACTCCCAATTTTAAATGGTCG
ATCGTAAAGAGATAAAATCATACAACAACGTGTCCAAATCTTGCCATTTA
TGTCTTTAtgaaaaatacgaaattttgaattaccCTCGTCAAAAAGAACT
CctaaacaaaagaactgaacTGGTTTCTAAATGCCGTCATCAGAATAAAT
TTTTATTAGCAAATTATAAGTCTAAAGATTGATCTTCACGTATATAGAAC
GTCTCTAGAGAATCATCATTTATATTTATGACCCTAGGGATTTATtccaa
ttaaattttttttacgatgaaaattttcataatcATTTCAAATCATAGCA
TTTGTCATTTTCATTTGATAGCTGAGGATTCGAAAAAGATGAAACTTGAA
GTTCTATAattcatattttgtttttttcttgtacaCTGATCTTCTTCCAA
TAAAGATTTGAGCACGTGACCAAACCAAAATAATAGATTGCCAACGTTTT
ATGAAAGCAATTCCCCGAGTTTAAAGGCCTTTAAGTAAAAATCCCATTTC
TTCCAATGAACACAGGGTTGAGCAGAAATTCAAGCATTCCAAATATCGTA
TCATTGCAGTGAGTTCTGTCATCATCATTTTATGCACAATATGTGTCATC
ATCAATGCTGCAATGGTTGGTGGATATGATTACCCATCACTACTTATCAA
TGGAAACATCCCTGGTAATCCAAGGCAGTAaggaaaagtttcatttaaaa
aattgtttttaactgATTTCGtgtaattcgaatttcaaatttttgttgag
TTACAATAGTTAATAGCGCTAGACTTGAAGATCGCCTGTCTAAGACTTTG
ATGTCCAATTGTAttgtttttctattgttttatttaaaaGTATATCAAAA
GAAGAATGTTCGGTGGATTAGGCGGATTTGATTGAAATTCTTCACaccga
aaatttttatttttgccatcttcaaaattaaattcccgctaaaCTTGCCA
GCTAAAATGTCTTCCATAAAGTTACTTTGTATTGTACAGATTGTCGCGGG
GAGAAATTATGCAGTATCTATCGATCTCTTCCATTCGTTAGGGAGTCCCA
TCGCATCTGTTTCTTTTAGTATTAAAAACAATGTCTTCGTTTTCTTCCCT
TTCTAGGAAGAGTTACCAAAAGAACCACGATAAGATATATACCAAACCGT
ACACCAGAATTAATCCGTACTTGGTTGGAATCCTTGTGGGATATTTATTG
GCAAGGAAAGATCAAATCAAAAGAACGGTATGCTTTGTGAGAACACTGTA
TTATGAGCACAAAATTAAGCGCAGGATTCTGTTTTTATGCGATTTATGTG
TTTAAAAAGAAATGGTCCATTGATGAACATTTCCAGAAGgtaatccgaga
aaaatttccagggtgtgttttttttcatttttccaaggggatAAAAGACT
AAGTTTAGTTCGTTAACCCTGACTTTGaagtatgaaaataatttttccaa
gggtatttttgaaacttttatcatttccagggggtatccacacatttcca
aaaattttttttgacttgaaaaggttcctCCACCCCCCTGCCCCTGgatg
gttttttaatggaacagccaaATACAAGGTTGGCTTTTAAAAGGTCTAAA
ATTAGCATACATCGATCCTAATCTAATTAGCTCAGATctagtttgagaaa
aaaactaatatGAGCACAAAATTGATCGCAGTACACGTACCATGCGAGGG
TCAATGAAGATCTACTTGGAAATAAAGTCAGCATAGATATGTTGTTCTAA
CTTTCATGTAGCACCAAACGAAAGTTCTATGTCCGctgggaaatttcaaa
aatacctTCATCATTTCATTACGACCATTTCATCACCTCATATTTACAGC
TTATCTACATCTTCTTATGGCTCGTAGCGTTCGGCCTAGGGTACGCCGTA
GTTTACGGACCTTACGTGGAAGCGTACAAAGAATTGCtcgattatctttc
caacggttcAAATGTTATGTATGGTGCTTTCCATCGATTGGTTTGGGCCA
TCGCAGTTGGATGGATCGTCTATGCGTGCCAGAATGGTTTCGGAGGTAAC
ATCTTTCCCGTTAATGCTAGAGAAACTGAATAACCGGCTAGTATGcttta
atataacaatagcgttcagtttgaggtcgttgttgttttTTACTGCCCtc
gcagtttgattattagcccgagagtgtcatttgggcccgacgcgaagcgg
agggcgcaaatggcactagaggNTGCccgcgcagtttgattattagcccg
agagtgtcatttgggcccgacgcgaagcggagggcgcaaatggcactaga
gggctaataatcaaactgcaagagcagaattaatgacaacaacgaacgaa
agcttaacgctattactattattatccatatcggaaattcaaacaacgtt
ttttttagcgtcagccaagtcttttcgcttcaatgcaatgacttcaacaa
gttttgagtacccttgcgagtgggccgcaaatgaccaaaaagtgtttttt
tttgacgtcggtttagtctcaccgcttcaatgcaacgacttcaataaagt
tccgagcgggccgcaaatgacgttatcaccctataaccagggcggttaat
gatatttcagccctctgaagcacgacgccttagttttctcagtgtgggta
tgactatttgagcaatagaacctttcaataccgcccgccgttcgaatctt
taatggcttacttaatgaccgctatatggataataataacAATTTTCATT
GCCAAANtaatggcttacttaatgaccgctatatggataataataacAAT
TTTCATTGTCAAAAACTATCCTTTTTCgtaataaaagaaatttttaatgt
ttatttatAGGTTACATCAACAGTTTCCTGTCGTGGGGAGCCTGGGTACC
AATCAGTCGTTTAACATTTGCTGCATATTTGGTCCATCCTTTGGTTATCT
TTTTCTTCTACGGAATCAGTGAACGCCCTTATCATTACCAAGATAACATG
ATTGTAAGTATTGTACATAGGAGGGGAAGGAGGTGTACATGGGCGTCAGG
TGGGCGTctacagatgatgatgaatttAATTAGCTTTCAAGCTAGTACAT
ATTTGTACACTTTTCTCGGCCTTAAAGAGTATATACATTAACAAATTTCA
GTCTCTCGGAAAAAACTTTTAGTTTTACCCCACAGTGATAAAaatttcca
ccggggctgtgagacaggactGTAAATATAAATTCAAGAAGATTATCACG
TTATGAAATAATCATGTTATAATTATTTGATTGTTTCAGGTTTACAACAT
GTTTTCCAACATCTTTTGGGCATACGGATGTGCATTCATTCTGGCTGTTA
CTGTCGAATATCCTTCAATGCAATTAGAAAAACTGCTCATTTCATGAGGA
TTATAAATCTTATCCGCCAAAAAGAG Coding sequence (CDS) from alignment at scaffold_86:788296..792271+ >TCONS_00072916 ID=TCONS_00072916|Name=TCONS_00072916|organism=Clytia hemisphaerica|type=CDS|length=4662bp|location=Sequence derived from alignment at scaffold_86:788296..792271+ (Clytia hemisphaerica) ATGCAGTTTTATATTGTGGCACCTGTTATCCTCTACGTTATGTACAAGGT TGAGCAGAAATTCAAGCATTCCAAATATCGTATCATTGCAGTGAGTTCTG TCATCATCATTTTATGCACAATATGTGTCATCATCAATGCTGCAATGGTT GGTGGATATGATTACCCATCACTACTTATCAATGGAAACATCCCTGGTAA TCCAAGGCAGAAGAGTTACCAAAAGAACCACGATAAGATATATACCAAAC CGTACACCAGAATTAATCCGTACTTGGTTGGAATCCTTGTGGGATATTTA TTGGCAAGGAAAGATCAAATCAAAAGAACGCTTATCTACATCTTCTTATG GCTCGTAGCGTTCGGCCTAGGGTACGCCGTAGTTTACGGACCTTACGTGG AAGCGTACAAAGAATTGCtcgattatctttccaacggttcAAATGTTATG TATGGTGCTTTCCATCGATTGGTTTGGGCCATCGCAGTTGGATGGATCGT CTATGCGTGCCAGAATGGTTTCGGAGGTTACATCAACAGTTTCCTGTCGT GGGGAGCCTGGGTACCAATCAGTCGTTTAACATTTGCTGCATATTTGGTC CATCCTTTGGTTATCTTTTTCTTCTACGGAATCAGTGAACGCCCTTATCA TTACCAAGATAACATGATTGTTTACAACATGTTTTCCAACATCTTTTGGG CATACGGATGTGCATTCATTCTGGCTGTTACTGTCGAATATCCTTCAATG CAATTAGAAAAACTGCTCATTTCATGAATGCAGTTTTATATTGTGGCACC TGTTATCCTCTACGTTATGTACAAGGTTGAGCAGAAATTCAAGCATTCCA AATATCGTATCATTGCAGTGAGTTCTGTCATCATCATTTTATGCACAATA TGTGTCATCATCAATGCTGCAATGGTTGGTGGATATGATTACCCATCACT ACTTATCAATGGAAACATCCCTGGTAATCCAAGGCAGAAGAGTTACCAAA AGAACCACGATAAGATATATACCAAACCGTACACCAGAATTAATCCGTAC TTGGTTGGAATCCTTGTGGGATATTTATTGGCAAGGAAAGATCAAATCAA AAGAACGCTTATCTACATCTTCTTATGGCTCGTAGCGTTCGGCCTAGGGT ACGCCGTAGTTTACGGACCTTACGTGGAAGCGTACAAAGAATTGCtcgat tatctttccaacggttcAAATGTTATGTATGGTGCTTTCCATCGATTGGT TTGGGCCATCGCAGTTGGATGGATCGTCTATGCGTGCCAGAATGGTTTCG GAGGTTACATCAACAGTTTCCTGTCGTGGGGAGCCTGGGTACCAATCAGT CGTTTAACATTTGCTGCATATTTGGTCCATCCTTTGGTTATCTTTTTCTT CTACGGAATCAGTGAACGCCCTTATCATTACCAAGATAACATGATTGTTT ACAACATGTTTTCCAACATCTTTTGGGCATACGGATGTGCATTCATTCTG GCTGTTACTGTCGAATATCCTTCAATGCAATTAGAAAAACTGCTCATTTC ATGAATGCAGTTTTATATTGTGGCACCTGTTATCCTCTACGTTATGTACA AGGTTGAGCAGAAATTCAAGCATTCCAAATATCGTATCATTGCAGTGAGT TCTGTCATCATCATTTTATGCACAATATGTGTCATCATCAATGCTGCAAT GGTTGGTGGATATGATTACCCATCACTACTTATCAATGGAAACATCCCTG GTAATCCAAGGCAGAAGAGTTACCAAAAGAACCACGATAAGATATATACC AAACCGTACACCAGAATTAATCCGTACTTGGTTGGAATCCTTGTGGGATA TTTATTGGCAAGGAAAGATCAAATCAAAAGAACGCTTATCTACATCTTCT TATGGCTCGTAGCGTTCGGCCTAGGGTACGCCGTAGTTTACGGACCTTAC GTGGAAGCGTACAAAGAATTGCtcgattatctttccaacggttcAAATGT TATGTATGGTGCTTTCCATCGATTGGTTTGGGCCATCGCAGTTGGATGGA TCGTCTATGCGTGCCAGAATGGTTTCGGAGGTTACATCAACAGTTTCCTG TCGTGGGGAGCCTGGGTACCAATCAGTCGTTTAACATTTGCTGCATATTT GGTCCATCCTTTGGTTATCTTTTTCTTCTACGGAATCAGTGAACGCCCTT ATCATTACCAAGATAACATGATTGTTTACAACATGTTTTCCAACATCTTT TGGGCATACGGATGTGCATTCATTCTGGCTGTTACTGTCGAATATCCTTC AATGCAATTAGAAAAACTGCTCATTTCATGAATGCAGTTTTATATTGTGG CACCTGTTATCCTCTACGTTATGTACAAGGTTGAGCAGAAATTCAAGCAT TCCAAATATCGTATCATTGCAGTGAGTTCTGTCATCATCATTTTATGCAC AATATGTGTCATCATCAATGCTGCAATGGTTGGTGGATATGATTACCCAT CACTACTTATCAATGGAAACATCCCTGGTAATCCAAGGCAGAAGAGTTAC CAAAAGAACCACGATAAGATATATACCAAACCGTACACCAGAATTAATCC GTACTTGGTTGGAATCCTTGTGGGATATTTATTGGCAAGGAAAGATCAAA TCAAAAGAACGCTTATCTACATCTTCTTATGGCTCGTAGCGTTCGGCCTA GGGTACGCCGTAGTTTACGGACCTTACGTGGAAGCGTACAAAGAATTGCt cgattatctttccaacggttcAAATGTTATGTATGGTGCTTTCCATCGAT TGGTTTGGGCCATCGCAGTTGGATGGATCGTCTATGCGTGCCAGAATGGT TTCGGAGGTTACATCAACAGTTTCCTGTCGTGGGGAGCCTGGGTACCAAT CAGTCGTTTAACATTTGCTGCATATTTGGTCCATCCTTTGGTTATCTTTT TCTTCTACGGAATCAGTGAACGCCCTTATCATTACCAAGATAACATGATT GTTTACAACATGTTTTCCAACATCTTTTGGGCATACGGATGTGCATTCAT TCTGGCTGTTACTGTCGAATATCCTTCAATGCAATTAGAAAAACTGCTCA TTTCATGAATGCAGTTTTATATTGTGGCACCTGTTATCCTCTACGTTATG TACAAGGTTGAGCAGAAATTCAAGCATTCCAAATATCGTATCATTGCAGT GAGTTCTGTCATCATCATTTTATGCACAATATGTGTCATCATCAATGCTG CAATGGTTGGTGGATATGATTACCCATCACTACTTATCAATGGAAACATC CCTGGTAATCCAAGGCAGAAGAGTTACCAAAAGAACCACGATAAGATATA TACCAAACCGTACACCAGAATTAATCCGTACTTGGTTGGAATCCTTGTGG GATATTTATTGGCAAGGAAAGATCAAATCAAAAGAACGCTTATCTACATC TTCTTATGGCTCGTAGCGTTCGGCCTAGGGTACGCCGTAGTTTACGGACC TTACGTGGAAGCGTACAAAGAATTGCtcgattatctttccaacggttcAA ATGTTATGTATGGTGCTTTCCATCGATTGGTTTGGGCCATCGCAGTTGGA TGGATCGTCTATGCGTGCCAGAATGGTTTCGGAGGTTACATCAACAGTTT CCTGTCGTGGGGAGCCTGGGTACCAATCAGTCGTTTAACATTTGCTGCAT ATTTGGTCCATCCTTTGGTTATCTTTTTCTTCTACGGAATCAGTGAACGC CCTTATCATTACCAAGATAACATGATTGTTTACAACATGTTTTCCAACAT CTTTTGGGCATACGGATGTGCATTCATTCTGGCTGTTACTGTCGAATATC CTTCAATGCAATTAGAAAAACTGCTCATTTCATGAATGCAGTTTTATATT GTGGCACCTGTTATCCTCTACGTTATGTACAAGGTTGAGCAGAAATTCAA GCATTCCAAATATCGTATCATTGCAGTGAGTTCTGTCATCATCATTTTAT GCACAATATGTGTCATCATCAATGCTGCAATGGTTGGTGGATATGATTAC CCATCACTACTTATCAATGGAAACATCCCTGGTAATCCAAGGCAGAAGAG TTACCAAAAGAACCACGATAAGATATATACCAAACCGTACACCAGAATTA ATCCGTACTTGGTTGGAATCCTTGTGGGATATTTATTGGCAAGGAAAGAT CAAATCAAAAGAACGCTTATCTACATCTTCTTATGGCTCGTAGCGTTCGG CCTAGGGTACGCCGTAGTTTACGGACCTTACGTGGAAGCGTACAAAGAAT TGCtcgattatctttccaacggttcAAATGTTATGTATGGTGCTTTCCAT CGATTGGTTTGGGCCATCGCAGTTGGATGGATCGTCTATGCGTGCCAGAA TGGTTTCGGAGGTTACATCAACAGTTTCCTGTCGTGGGGAGCCTGGGTAC CAATCAGTCGTTTAACATTTGCTGCATATTTGGTCCATCCTTTGGTTATC TTTTTCTTCTACGGAATCAGTGAACGCCCTTATCATTACCAAGATAACAT GATTGTTTACAACATGTTTTCCAACATCTTTTGGGCATACGGATGTGCAT TCATTCTGGCTGTTACTGTCGAATATCCTTCAATGCAATTAGAAAAACTG CTCATTTCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072916-exon-scaffold_86-1491911889:788296..788378 | TCONS_00072916-exon-scaffold_86-1491911889:788296..788378 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1510915933:788296..788378 | TCONS_00072916-exon-scaffold_86-1510915933:788296..788378 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1575043694:788296..788378 | TCONS_00072916-exon-scaffold_86-1575043694:788296..788378 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1491911889:789361..789522 | TCONS_00072916-exon-scaffold_86-1491911889:789361..789522 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1510915933:789361..789522 | TCONS_00072916-exon-scaffold_86-1510915933:789361..789522 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1575043694:789361..789522 | TCONS_00072916-exon-scaffold_86-1575043694:789361..789522 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1491911889:789952..790072 | TCONS_00072916-exon-scaffold_86-1491911889:789952..790072 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1510915933:789952..790072 | TCONS_00072916-exon-scaffold_86-1510915933:789952..790072 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1575043694:789952..790072 | TCONS_00072916-exon-scaffold_86-1575043694:789952..790072 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1491911889:790695..790890 | TCONS_00072916-exon-scaffold_86-1491911889:790695..790890 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1510915933:790695..790890 | TCONS_00072916-exon-scaffold_86-1510915933:790695..790890 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1575043694:790695..790890 | TCONS_00072916-exon-scaffold_86-1575043694:790695..790890 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1491911889:791706..791848 | TCONS_00072916-exon-scaffold_86-1491911889:791706..791848 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1510915933:791706..791848 | TCONS_00072916-exon-scaffold_86-1510915933:791706..791848 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1575043694:791706..791848 | TCONS_00072916-exon-scaffold_86-1575043694:791706..791848 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1491911889:792135..792271 | TCONS_00072916-exon-scaffold_86-1491911889:792135..792271 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1510915933:792135..792271 | TCONS_00072916-exon-scaffold_86-1510915933:792135..792271 | Clytia hemisphaerica | exon |
TCONS_00072916-exon-scaffold_86-1575043694:792135..792271 | TCONS_00072916-exon-scaffold_86-1575043694:792135..792271 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_86 | supercontig | scaffold_86:788296..792271 + |
Blast
The following BLAST results are available for this feature:
|