XLOC_045612 (gene) - C. hemisphaerica

Overview
NameXLOC_045612
Unique NameXLOC_045612
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_93:43447..50280+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045612 ID=XLOC_045612|Name=XLOC_045612|organism=Clytia hemisphaerica|type=gene|length=6834bp|location=Sequence derived from alignment at scaffold_93:43447..50280+ (Clytia hemisphaerica)
AGACAAATTACTTTTTACAGcttcaaaactaaaaacaaatGTCAAGTGAA AGTCAATTAAATGATTGGACAGTCAAACAACTGCAGGAGGAATTAAAGAA AAGGAAATTATCAATCTATGGCCGTAAATCAGTCCTGGTATAAACTAtag atttttcatcatttttatgatttcattctattataattttttatgtTTGG TGTATGTCTTCTCAGTGAAATGGTTTTTTTaaggaaagttttttaaaatc taTAAAGTTTGTTTTACGACATGATTATATTAGTCATTGAACGCTCGATT ATTTCTTATTCTTCTTTGTATATTAGGTCAAAAAAAAgtagtcttgtttc cggaaatcggcATTTATTCCACGTGTGTTTGATCGCAGACATTTTTATAC AATTTAGATagataaattctgaaaatgtgaaaaaaaaatttgtggcCGGC CGGGTGAGTTTTTTTCGTAACCTGCACTTCCAGAAAcaagactacttttt ttttttggccttatATCTTATTGTTATATATTTGCTATCATCATTATGCC TCAAACTAATTTCATACCGACAACAATTTCCTTTGTAAACGATTattcct ttttgttttgttaattttattGTTAAAATGAATAGTAACAGATAGTAACA TTGTTAATTCTGAACTTGCAGGTTCTTGGCTGAAACTCTAGGCGttcttt tttttatctcctggtggacaagaaacaaaaaatatttaccatttgtttat ttttcaggtTGAAAGGCTTTTTGATCTAGCCAAAACTGAAGAAGTTcggt aaaaatgatttttataatATATTGAATTGGATTTTACTGACAAATATCAC GCCTAATCtatttctttctgttttgtGAAAATAGGATTATTAAGATATTA CTGGCCTTTGAAAGATTGTATTAACTGtttatttgatttaatttttgttc TTCTAGCAATCGGAATTCTGAGATGATGTCAACAGGTAAAAATATTtgtt aagattttcaaagtTATAGCAAATGTATGGCATAGTCAAGAAAAACCCTA TTATGAATATTTAGGCCAAAACTGACCTTTTTCAAcataaaccaaaccaa tgtaaCAATGTATGTATGTTTTCCtatggaatagcccattatgGTAATCA ACCTAGTCCTCGTGTATCACTACACACTAGCGTTGAAAGATGTATTGGAT CCAAACAAGTttaattcaaaaagattttttttcgcaGACAATGAAAATAC AGTGAAACATACCCAGTCCTCAGAAGAATTGAAAGAACAAAGACACCAAG ATAGAGAACAGCGAAAGAAAATTGTCATTTGGAGAAAACCTTTGCTCACG ATACATTATTTCATATTGGAACTCTTTGAGCTtataaaacaagaaaaaga aaggtAACATTTCCGCTCACAGTTACTATTCCAACAGTTTAGTATTTGTT CAATCTAGAGAGATTAAAATATTTACTCATAATTTCTGTAAAGTAACGTG TGCTAGGACTCTTTTATTTTCataggttttttttctttttactccTTTCA CCTatgaaaaacatgaaacaaAAAGTACATCTAGTACATAATACAATTTT TACACTTTATCCCTCTTAGCATCAGCAAACATAGGAAGACATGTTCAATT CTGGCTATCATCAGTTTTTTGGTATTATCAGTGTACACGTGGGATGGCCC TCACCAATCATATGTCAGTGGAATCGAAAAGTATCTGTTATGGTGTGGAT ATTGGGTTGGCTTAGGTATCTTATCATCTGTTGGCCTTGGTACAGGACTA CACACATTCTTATTGTATCTGGTAAGTAATAATCTTTTGTTTacactttt tttggattttaaaggCCATAAAAACTTTGGCTATGAATCCAAAAAGCTAA ACACTTCAAAGagaacataaaacttactgTCCGCTTCTGTAGTAATATCG GATGGTTTATTATAACACAATCTCTGACTGAAACTTGAGAAGGGATTAGT ACTTGCAACTATTTTTTATTACCAAGGataaataaagaacaaataaaaaa aagattaaaaacaaACTAGTTAGTACCAGGTACTAATCGACACATTTTCC TGAAAATCAGGATTAGTACTCCCTCTAGTCTGTCTCAGATTGTCTTGGAT TGATTCCTGATCTTTTCTGTTTTACCTGCCACAGTTTAATTCTATTTGTG CAAGGTATTCAAATAAGAATTTTACTCATACAGTATATTCTATATTTCTT TCAGGGCCCACACATTGCAAAAGTGACATTAGCAGCATGGGAATGTGGAT CACTTAATTTCCCTGAACCACCCTATCCTGAAACGTATGTTATCCTCCTC ACTTTTTACATCTGCAAAATGTTTcaacttttattctttattgaaAACAT CTTCAATATCCTATCCTCCTAGAAGCAATTTTGATTAATGAAATTTGATT ACCAAATCCAAATGAACTACgaaaaacgtggaaaacttggGAAAACTAAC TATATGATTTTTATATTCCCAAATTTAAAATTCCAactattttgggaccc ttgctCAGCCTAAAGTTGTTAGAGCCGTTAGAAGTTTCCCCTGGGCCACC AAGATAAGATTGAATATTTCCTGTACATTTTTAAGATagttttaaaactt tgttttgatatctCTTTTAGGATCTTGTGCCCAGACTCTGTTGCTGATGA TTCTTCCACACCCATCAATATGTTTTCCATCATGTCAAAAGTTCGCTTAG AAGCTGTCATGTGGGTATggcatttgttttttttcatgatatttcctATC TGTTGACAAGAGCAAGCTTTGCACAATGTTGAATACACTCTTTTACATAT AAACACAAATTTCAGTTTAGAAtaagcttttttatttatttttctaggTA CTCTGAGCTTCAAGTTAATCTTATCCTATTCTTATTCTCTGAGTAAAATT GAGTTATTTTAAGGCTTTAGCTTATTTTTACCACATTGACCCTTTTTGAA TGGATTCAGGGATTTTAGGCTCAGCTTTAATTTTGAATTGTTTGTTTATT GTTTTGAGTCGCATTGTCTTGAAGAATGCTGAGTACACCAAAGTGTTTCC TGTATTGTTAAAGGAAAGTTTCATTtgattaatttatttttctctcATCT CTACTATTGGTGGATCACACTGAAGTTTTCTTTGACGTTTTCTTTCTTAA ATCTTTGACGTTTTCTATACAGGGAGCAGGCACAGCTATCGGAGAACTTC CACCTTACTTCATGGCAAGAGCAGGTAAGTTGTAGAGATCTTAGTTCACA TATTGATGCAATCCAATATGTATTTTGCGATTGAATAGCCCTGTTAAGAA AGTAAGCCTTCATCAACACTTATCCAGTGTGACTTCTATTGAtaatattt catgttttttttcatcCACAGCCAGGTTATCAGGGGAGGACGATGTGGAT AACGAAGATCTCGAAGAATTAGAAGACCTCATCTCCAGTGATGACCAGGT ATTATTACAAATACacttctttaatttttaaagattatcaTCCGATCTCA TTGGGTTTTGAATGGCTTTTTAAAACTCTTGCAGTACTGCTGAATCACTA TTCTGCATAGTAATAAAAATATTCTAATTACAGTAATTCTGTGTTAATGT CATCACACACATGATAAAAGTCACTATCGGCCAATGGTATTATACTATTT TATACCAATACAGTCCCCAAACAAACTAACTTTCTATTGATTTCTTGATT TATCTTTCTTCTCTAGGGACTTTTCACGAGGCTGAAAAAAGCTGTGCCAC AAATTGTCGAACGAGTTGGATTCTTTGGAATCCTGGCTTTTGCTTCTGTA AGAATactgttatttttttttgtgtggGGGAGCGCAAAATCTTCCATCAA ACCATGGtcatattcatgatatacaccattgcaatgtcttccgttccacc caatagctgattggttgaaagtgacgtattgactgcttttacgtcacttc caaccaatgcgctattggttccgtgacgtaatgtcagaagacattgcagt ggtgcatatcataaatacaTGTGTTCAATTGAAAACTGATGACTATATGC TCACTTAGCAATATTAACAAAATAGGTGAAAGAAATTCGATTatcaattt ctgaaatttcaagCGAATATGAATTTAATCTTATCTCATGGTTTCCGTTT CCTTTCCAGATACCGAACCCTCTTTTCGACTTGGCTGGCATAACATGTGG ACATTGCTTGGTCCCATTTTGGACTTTCTTTGGAGCAACCTTAATCGGAA AATCCATCATCAAAATGCATATCCAAGTAACTTTTTTTATGGTTGATAGC TCCATACATTGTTTCATTGAacttactttcaattttttaaattaattgcA AGTTTTATTAGCCATCTTGCCGGAcgtgattttgaaaattctaattttct aacgaattttttctcattttcttatCAGCAAACATTTGTTATATTGTGCT TCAGTAAAAGATACGTCGAACAACTACTCGAATTTTTAAGGTAGGGAATG GTTTGTTTGCATAGGTTTGaatcttttactttttgttTAGCAACCCGAAG CTTACCTTTTCTTTTGGATACTAAGAAATCGAAAACTATTAGTTAATCAA GTCAGGGTTTTATTCCTTCTTCAATCCgggtcaaaatatatttcctcgtt tttagaCGTTtagagttcgggcgagaaagtcacttttgggctatttgtta aatgtaatcgaatatttcagGGGCTTATATCCTTCCAgactatattctga gccctattggaccttTCTTGAACTTTATTTGGATcgtcagatcctaaggt cctaagtcttaagccTAGCGTCTTAACTCTACCTTTCTAACCTTAGTTAG AGCGCTTTAAATCGTTTCTGgctaagatttcgtgggaacttttctcaaat attatgaccttgattgttgGTCTAAGCTTGTGTTGATAGTATATCAACAA AATATGCTTTTAAACTTGGTCAGTGGGGattaaaatgtttaaatttcttt ttcactacAGTGGTGTGCCTTATGTTGGTTCATATATTCAATATCCGTTA GAAAGAGCTGTCCGAGctcaaaaaagtaaattacATGGAGCTTCTTCAGG AAAAGCCGGCGAGGTATAATATTTCTGACTTGTTCTATTGTTTTAGAGAT TTAGTTTATTTTAAAAGGTGAATGAAACTTCGTCCGGGTCAACctatgcc atgtgaggggaattgggtagtcagtccaaggtgctgacctGACGGGgtgc tcattgaaagcgtctgtagttgcgaaaataggcctgaaagcctcctgcaa ctcaaccaaatagaagtCATGAGTTTCTTGCTGAGACCCTTAGCTTATAC TTCCATCCAGGTGAAATGCAATTACATTTTTGCTCGTgaaatttcggcca aatttCCCTCCACAAAGATAACACTGGTTCCNTGCTCGTgaaatttcggc caaatttCCCTCCACAAAGATGACCCTGGTTCTAATACTAGTTTTGGTCC GTTGGTTTTGATTAAAAaaccttttcttttcattttcaaaaaacaatgaa aataaagcGTTTGTAGAAAATTATTATCCAGATGAAAGTGGACGGATGGA CTTATAGTATGATAATTTTTATTCCATTTTTTAGGACGGTAATATCCTTG GGTTTATCTTCGAGAAGTTTGTCACCATCATGGTTGTATATTTCATCATC TCTATCGTGAACTCGCTAGCACAATCCTACGCTAAGAAAGTCGATGAAAC TAAAAGACAATTAAATAATGGTGTCGGTGTTGTTCCACCAAAAGCTGACA AAGCTGATTAGATTTGTGTTGAAGGATAGTATTTTATGACTTGTTATCTA GTCATCATAATGTGGCTTATAGAGTGACCCCACTTTTAAGCGATAGTTGT AGCTATCTATGATATGCCCGCTGCAATTACTAGAACCTGGAACCTCCGGA CCTACAATCAGCGCCGAATTATATTGGCAATTTGGGGTATattaacgttt ttcaaaatttctcgggcaaaaattgtaatttcagtacttccactttgttt cagGGGATTTTTCGATTGAGGAGGGGTTACAGTGGCTTCCAAGCTATGTT CTCTGCCATATTGGAACATATTTGAGCTTTTAGaccctgagatcctaagg tcttaagtattaagtctaatgttaaaactcagagttaaaactctactttc taactcTACTTTAAAGggcttaaaaatcacttgcggttttaaagttttga gggaattccccttttgtgccaattATTTCGGCGCTGATCGTAGGTCAAAA GACTACCGGAATAATGCAACTTACGACTTTCTAGCCACGTCTATTGNaaa agtctctcaaagggtcccaaagtcaccaaaattttgtctctcaaagggtc gattttcgattttcggctcggacatacccgtcacctcgcaaacctagtac ccccccgggtttCGATCTCAAGTTTGAATTGTTTTACCTTAATTAGTGAG ACGTTTTGGCTGAAGAAAACCTGGCGGATTCTCCAAGATCATTTATTTTT CCAGCATTTGCCAATTTGCAATtcccatcaaaatttttttattcgatTCG GATTGCATTATAATTATATTCATATattttttctcttgtttttcATCATT TAGAATATTAGGAACAAGTTAATAATAATTattggattttttcaaatttt agaataCTGAAAAATTGAGTTCGTAATGCTATCTTTGTTTGCAAATTCAC AAGTTAATTTGTAAACAAGAGAATCCCCCTCCCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00073486TCONS_00073486Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00073486-proteinTCONS_00073486-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:43447..50280 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
VMP1vacuole membrane protein 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
57.96 58.78 29.64 25.94 48.68 38.76 44.3 48.86 34.67 35.03 29.31 25.73 26.6 25.17 26.23 29.03 35.4 31.55 13.62 16.77 24.41 23.9 41.42 44.54 45.66 41.75 27.94 20.85 42.41 37.97