transcript:BL97468_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97468_cuf3
Unique Nametranscript:BL97468_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97468_cuf3

>transcript:BL97468_cuf3-protein ID=transcript:BL97468_cuf3-protein|Name=transcript:BL97468_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=209bp
LDPAEARYEVPEAALRVPRPGQAADNPMYDVTFTHRPFSFKVTRKSTGAT
IFDTSVGKLTFGDQFLSVSTRLASSNLYGLGEHVHRRYRHDLNWKTWPIF
SRGASPKGNFDNLYGHHPFYMCLEDSDGNANGVFLLNSNAMEVTLQPPVT
SIKSQIRDDILDVERVAMPTVTYRVIGGVLDFYMFLGPSPENVVQQYTDM
IGRSIMPAY
Run BLAST on NCBI

mRNA from alignment at Sc0000011:1585085..1587195+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97468_cuf3 ID=transcript:BL97468_cuf3|Name=transcript:BL97468_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2111bp|location=Sequence derived from alignment at Sc0000011:1585085..1587195+ (Branchiostoma lanceolatum)
CTTAGACCCCGCCGAGGCCCGGTACGAGGTGCCCGAGGCGGCCCTGAGGG
TCCCCAGACCCGGGCAGGCGGCGGACAACCCCATGTATGACGTCACCTTC
ACTCACCGGCCCTTCAGCTTCAAGGTCACCAGGAAGAGCACCGGGGCAAC
AATGTCAGTCATTACGTCATGTTTCTATATTGTTTTTGTAAATGAGCAAA
TTTATTAGAACTGCATGGAAGAAAATATCTATGGAGGTCCAGAGTAAGTC
GGAACATCTTGTCGCAGTGCAATGGAAACATGCATGAGAATAATAAACCA
ACTACTGTTCTAAAAAAAAAAAACAGCACTAAAACGTAAAGTTTTAAGGG
GCATGTGGTGTCTATTTGCTGGAGTACATTTAATATTTGATATTTAATAA
TCTTCTGGCTAAAAACGTAACAAGCACTGGATTCTTGACACGACTACCTC
TCACAGTACGATGTTTTAAATGTTGCTTTTTTTAATCAGAAAACAAGATA
CACATGGACATGGACATGGACATAGAGGCGCTACACTCGTGTACGTGGAC
TTATTTTGCAGCGCCACAGAAAAACCAAATAAGAATGGACAGAGACAATG
ACAAACTTAAGCAAGTTTCTGAACAAACGTAACATAAATAAGATAAGATA
TGACTGAAGTAAAGTTAAATGTTGTCATGAACTACGTTTCTTCAGATTCG
ACACGTCCGTGGGTAAGCTGACGTTTGGTGACCAGTTCCTGTCCGTGTCC
ACCCGGCTGGCCAGTTCTAACCTGTACGGACTGGGGGAGCACGTCCACAG
GCGCTACAGGCACGACCTCAACTGGAAAACGTGGCCCATCTTCAGCAGAG
GAGCTTCTCCTAAAGGGGTGGGTATTCAGTCTACGGTAGGCGTGATAAAG
ACAGGAAAGAAGCATTGGAAAAACAAGTTCAAGGCCATAAGTAATGGCAG
ACGTCACCCCGTTTCCCATACTGCTTGGTAGTCCTTATAGTCCCACATAC
AAAAGTACCAGCAATGTATAGCAATAGTGCATTGTGTACATTAAGAACCA
CTTTAACATACACGCACGTACTTACACAGCTAGCTAGCCAGACAGACAGA
CAGACAAGCTAAAAACAATACTTCACAATCATTGTACCTGGAACAATGGA
CTGCTATCTTCATCATCTTGTCGTGAGAGCGTTACTATGTTATAGGGTAT
AAAAACCAAACTTATCGTTCCAAAACGTTACCAGATGCTGCATGTATCAT
CATGAGCAACTGAACACCTCTGAATTATCTGAATCTCTTCTCCTTCCAGA
ACTTCGATAACCTGTACGGGCACCACCCGTTTTACATGTGTCTGGAGGAT
TCAGACGGCAACGCGAACGGCGTCTTCCTCCTCAACAGTAATGCTATGGG
TGAGGGAGGACTCGATAGTCATGTTATGAACTAATGTGTTTTCGGTGTAA
TCAACTCTCTCTTTCTTTCGGTCTTTATACCTTTGCACGTTCAATCACAT
TGTAATAAACCAACGTGTCTTGTACCTCCTCAGAGGTGACGTTGCAGCCC
CCTGTTACGTCAATCAAGTCCCAGATCCGTGACGACATCCTGGACGTGGA
GAGGGTTGCCATGCCAACCGTGACGTACCGCGTGATTGGCGGGGTGCTGG
ACTTCTACATGTTCCTCGGACCCTCCCCGGAAAACGTCGTGCAGCAGTAC
ACGGATGTAAGTGTATAGAAGCATTGAAAATAGCCACAACTAGATGCAAC
TATACGACGAAAGAACGAACAAGGTACTGACACGTTCAGGTTATGAACAA
GATTGATCAAGATCAAGACCACTCAACAGTGACAGCAGCATAGAGACAAA
ACAGGGCTGTTCACAAACAAACAAACAAACAAACAAACAAACAAACAAAC
AAACAAGCAACCCATACAGATGCTGGAAGTATCTAGCCTCCGTTGCAGGT
TCCATCGCCTGCTTTCTTAGGCTACCATTTTCCTGGTTTATCTTTTAGTA
CATTCTTATTGCGAATATTTATTGCTAGGTGCTTGAATATCGACATTCAC
TGTTGACATCTTTGCAAACCTCTCCTCAGATGATCGGGCGGTCCATCATG
CCGGCGTACTG

Coding sequence (CDS) from alignment at Sc0000011:1585085..1587195+

>transcript:BL97468_cuf3 ID=transcript:BL97468_cuf3|Name=transcript:BL97468_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=3135bp|location=Sequence derived from alignment at Sc0000011:1585085..1587195+ (Branchiostoma lanceolatum)
TTAGACCCCGCCGAGGCCCGGTACGAGGTGCCCGAGGCGGCCCTGAGGGT
CCCCAGACCCGGGCAGGCGGCGGACAACCCCATGTATGACGTCACCTTCA
CTCACCGGCCCTTCAGCTTCAAGGTCACCAGGAAGAGCACCGGGGCAACA
ATATTCGACACGTCCGTGGGTAAGCTGACGTTTGGTGACCAGTTCCTGTC
CGTGTCCACCCGGCTGGCCAGTTCTAACCTGTACGGACTGGGGGAGCACG
TCCACAGGCGCTACAGGCACGACCTCAACTGGAAAACGTGGCCCATCTTC
AGCAGAGGAGCTTCTCCTAAAGGGAACTTCGATAACCTGTACGGGCACCA
CCCGTTTTACATGTGTCTGGAGGATTCAGACGGCAACGCGAACGGCGTCT
TCCTCCTCAACAGTAATGCTATGGAGGTGACGTTGCAGCCCCCTGTTACG
TCAATCAAGTCCCAGATCCGTGACGACATCCTGGACGTGGAGAGGGTTGC
CATGCCAACCGTGACGTACCGCGTGATTGGCGGGGTGCTGGACTTCTACA
TGTTCCTCGGACCCTCCCCGGAAAACGTCGTGCAGCAGTACACGGATATG
ATCGGGCGGTCCATCATGCCGGCGTACTTAGACCCCGCCGAGGCCCGGTA
CGAGGTGCCCGAGGCGGCCCTGAGGGTCCCCAGACCCGGGCAGGCGGCGG
ACAACCCCATGTATGACGTCACCTTCACTCACCGGCCCTTCAGCTTCAAG
GTCACCAGGAAGAGCACCGGGGCAACAATATTCGACACGTCCGTGGGTAA
GCTGACGTTTGGTGACCAGTTCCTGTCCGTGTCCACCCGGCTGGCCAGTT
CTAACCTGTACGGACTGGGGGAGCACGTCCACAGGCGCTACAGGCACGAC
CTCAACTGGAAAACGTGGCCCATCTTCAGCAGAGGAGCTTCTCCTAAAGG
GAACTTCGATAACCTGTACGGGCACCACCCGTTTTACATGTGTCTGGAGG
ATTCAGACGGCAACGCGAACGGCGTCTTCCTCCTCAACAGTAATGCTATG
GAGGTGACGTTGCAGCCCCCTGTTACGTCAATCAAGTCCCAGATCCGTGA
CGACATCCTGGACGTGGAGAGGGTTGCCATGCCAACCGTGACGTACCGCG
TGATTGGCGGGGTGCTGGACTTCTACATGTTCCTCGGACCCTCCCCGGAA
AACGTCGTGCAGCAGTACACGGATATGATCGGGCGGTCCATCATGCCGGC
GTACTTAGACCCCGCCGAGGCCCGGTACGAGGTGCCCGAGGCGGCCCTGA
GGGTCCCCAGACCCGGGCAGGCGGCGGACAACCCCATGTATGACGTCACC
TTCACTCACCGGCCCTTCAGCTTCAAGGTCACCAGGAAGAGCACCGGGGC
AACAATATTCGACACGTCCGTGGGTAAGCTGACGTTTGGTGACCAGTTCC
TGTCCGTGTCCACCCGGCTGGCCAGTTCTAACCTGTACGGACTGGGGGAG
CACGTCCACAGGCGCTACAGGCACGACCTCAACTGGAAAACGTGGCCCAT
CTTCAGCAGAGGAGCTTCTCCTAAAGGGAACTTCGATAACCTGTACGGGC
ACCACCCGTTTTACATGTGTCTGGAGGATTCAGACGGCAACGCGAACGGC
GTCTTCCTCCTCAACAGTAATGCTATGGAGGTGACGTTGCAGCCCCCTGT
TACGTCAATCAAGTCCCAGATCCGTGACGACATCCTGGACGTGGAGAGGG
TTGCCATGCCAACCGTGACGTACCGCGTGATTGGCGGGGTGCTGGACTTC
TACATGTTCCTCGGACCCTCCCCGGAAAACGTCGTGCAGCAGTACACGGA
TATGATCGGGCGGTCCATCATGCCGGCGTACTTAGACCCCGCCGAGGCCC
GGTACGAGGTGCCCGAGGCGGCCCTGAGGGTCCCCAGACCCGGGCAGGCG
GCGGACAACCCCATGTATGACGTCACCTTCACTCACCGGCCCTTCAGCTT
CAAGGTCACCAGGAAGAGCACCGGGGCAACAATATTCGACACGTCCGTGG
GTAAGCTGACGTTTGGTGACCAGTTCCTGTCCGTGTCCACCCGGCTGGCC
AGTTCTAACCTGTACGGACTGGGGGAGCACGTCCACAGGCGCTACAGGCA
CGACCTCAACTGGAAAACGTGGCCCATCTTCAGCAGAGGAGCTTCTCCTA
AAGGGAACTTCGATAACCTGTACGGGCACCACCCGTTTTACATGTGTCTG
GAGGATTCAGACGGCAACGCGAACGGCGTCTTCCTCCTCAACAGTAATGC
TATGGAGGTGACGTTGCAGCCCCCTGTTACGTCAATCAAGTCCCAGATCC
GTGACGACATCCTGGACGTGGAGAGGGTTGCCATGCCAACCGTGACGTAC
CGCGTGATTGGCGGGGTGCTGGACTTCTACATGTTCCTCGGACCCTCCCC
GGAAAACGTCGTGCAGCAGTACACGGATATGATCGGGCGGTCCATCATGC
CGGCGTACTTAGACCCCGCCGAGGCCCGGTACGAGGTGCCCGAGGCGGCC
CTGAGGGTCCCCAGACCCGGGCAGGCGGCGGACAACCCCATGTATGACGT
CACCTTCACTCACCGGCCCTTCAGCTTCAAGGTCACCAGGAAGAGCACCG
GGGCAACAATATTCGACACGTCCGTGGGTAAGCTGACGTTTGGTGACCAG
TTCCTGTCCGTGTCCACCCGGCTGGCCAGTTCTAACCTGTACGGACTGGG
GGAGCACGTCCACAGGCGCTACAGGCACGACCTCAACTGGAAAACGTGGC
CCATCTTCAGCAGAGGAGCTTCTCCTAAAGGGAACTTCGATAACCTGTAC
GGGCACCACCCGTTTTACATGTGTCTGGAGGATTCAGACGGCAACGCGAA
CGGCGTCTTCCTCCTCAACAGTAATGCTATGGAGGTGACGTTGCAGCCCC
CTGTTACGTCAATCAAGTCCCAGATCCGTGACGACATCCTGGACGTGGAG
AGGGTTGCCATGCCAACCGTGACGTACCGCGTGATTGGCGGGGTGCTGGA
CTTCTACATGTTCCTCGGACCCTCCCCGGAAAACGTCGTGCAGCAGTACA
CGGATATGATCGGGCGGTCCATCATGCCGGCGTAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97468gene:BL97468Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97468_cuf3transcript:BL97468_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97468_cuf3-E1BL97468_cuf3-E1-1564476830-102321Branchiostoma lanceolatumexon
BL97468_cuf3-E2BL97468_cuf3-E2-1564476830-102323Branchiostoma lanceolatumexon
BL97468_cuf3-E3BL97468_cuf3-E3-1564476830-102325Branchiostoma lanceolatumexon
BL97468_cuf3-E4BL97468_cuf3-E4-1564476830-102327Branchiostoma lanceolatumexon
BL97468_cuf3-E5BL97468_cuf3-E5-1564476830-102330Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000011genomeSc0000011:1585085..1587195 +
Properties
Property NameValue
Transcript idBL97468_cuf3
Biotypeprotein_coding