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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97294_cuf2 >transcript:BL97294_cuf2-protein ID=transcript:BL97294_cuf2-protein|Name=transcript:BL97294_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=345bp
SCTSQPGQSELHIRDVIVQVQMGDITMEQVGAIVNPSQNNLDLDKGVSRA ISMAAGPSVQKECRQYIRDNWSPKAGEVIATGAGHLPCKAILHLVQPTAK YLRSDVKNCLLVAHQMNLRSIAFPAMGTGGFHIKPERSARCLIDGIVEFV EDWSPTTLSIIRIVILQESMLQAFHTAVHRKASEDTGKAAPSKDTNRLDR LKNIATDKMKRIARRPKEETSWVTVQLPKPEPPKEDDFEDALQPDEVLLH IFCLDQTKLQNARDTVDEFLHQYTTVVVINDDKETGIAQLVKEEVRWLRF LGREENVSIAIEQENCIRIEGSRNVAAIAARFRLILKTIVEKHSR Run BLAST on NCBI mRNA from alignment at Sc0000149:656930..659007+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97294_cuf2 ID=transcript:BL97294_cuf2|Name=transcript:BL97294_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2078bp|location=Sequence derived from alignment at Sc0000149:656930..659007+ (Branchiostoma lanceolatum) TCTTGTACATCTCAGCCCGGCCAGAGTGAACTTCACATACGTGACGTCAT
AGTTCAAGTTCAGATGGGAGACATTACCATGGAGCAAGTCGGTGCCATCG
TCAATCCATCACAGAATAATCTTGGTAGGTCCTTTTAAATCATACAAAGA
ATTACAAGATCATTTTTCTTGCATTTTTATGAGTTCGTATCAGGAAAGAC
TTGGAATACGTACGTTGTTAGACACTGTGCCATTATTCCGTTTTTACGGA
ACCGTCAAATGGAAATCGAGGCTTTTGTTTCAACCTTCCCTGGCCTACTC
CACACCTTGATAGATAATAAGCCTACTACTATGCCTTCTAACAGACTTGG
ACAAAGGTGTAAGCAGAGCCATATCGATGGCAGCCGGCCCTAGCGTCCAG
AAGGAGTGTAGACAGTACATCCGGGACAACTGGTCTCCCAAGGCAGGAGA
GGTTATTGCAACAGGTGCGTACTGTATGTTGCATAGTCACTCACGGTTTT
GTCTTGTCATCGTCTTTGAGCATTTTTCAGTGCGCTCCTTTCAAATTGTT
CAAATACAATTTTTATTTCTTGATTATTCCATAGGTGCTGGTCACCTGCC
GTGCAAAGCGATTCTCCATCTCGTGCAACCAACAGCCAAATATCTGCGGT
CGGACGTGAAGAACTGCCTGCTGGTCGCGCACCAGATGAACCTGCGATCG
ATCGCTTTCCCTGCGATGGGAACAGGTGACTAATGTCTTCTTGGATGAAA
AGAAAATAAGAAAACTTAGGTTCAATATGTTAAGTAGCGTAGTTAACTCC
GTCCAACGTATGGAGCAGTTGTTTGGATTGAATAGGTAAAGTCTATGAGT
TGTAAATCTCAAAACACATTGCCTTCATCTGTCTCTTATACAGGAGGGTT
TCACATCAAGCCTGAGCGGTCGGCGAGGTGCCTGATTGACGGCATCGTGG
AGTTCGTGGAGGACTGGAGCCCCACCACACTGTCCATCATCAGGATTGTC
ATCCTCCAGGAGAGCATGTTACAGGCGTTCCACACGGCCGTCCACAGGAA
GGCTTCGGAGGACACAGGGAAAGCGGCTCCATCGAAAGACACAAACCGCC
TGGATAGGCTAAAAAGTAGGTATCAATTATATACTGTGCTGCGTTATACA
TGATGAGATTCAATGGGGTATGAATATTTTGCTGAGGTATTGTTATTGAT
TGTATCACAAAACGTGGCAACTATGCGAATATTTGCGTGGTTACTTCAAA
GTTGTAATGTCCTCATCTTTAACGATGGACGGATTTTCTTACCTTTATGT
CTACATAAAGTGTTCGGGTAGCAACCTAACTTAACCTGAAATGAGATTAC
GAATTCCAACATTTCTTCCACAAGACATAGCCACCGACAAGATGAAGCGT
ATAGCAAGGCGCCCAAAAGAGGAAACATCCTGGGTCACGGTCCAACTCCC
CAAACCAGAACCGCCCAAAGAAGATGACTTCGAAGACGCTCTGCAGCCCG
ACGAAGTTCTGCTGCACATCTTCTGCCTTGATCAGACAAAGTTACAGAAT
GCCCGAGACACTGTGGACGAATTTCTCCACCAGTACACAACTGTGGTGGT
GATCAACGACGACAAGGAGACAGGGATCGCCCAACTCGTGAAGGAGGAGG
TTAGATGGCTTCGGTTTTTGGGACGTGAGGAAAATGTGTCCATCGCAATC
GGTGAGTTTTTAAAAGAACTGATGTTTATCCTCAAACCATCATTTGTTGC
TTACGCTGATAAAATCTTATTCTGTCAATGATACTCAGTTAGACTCGATT
ATTGATCTGTGAAGAAATATAAGGGTTTATAGTAGTCGATTATAAGATAT
CTGTCTCTTGCTTATGGCAGCATCTCTTTACCTATTTGACTTTCCTTAAC
ATTGCGAAGGGCGATAGGTGAAATCACAACAGTATTTATGAGTTATTATC
TATGTCGACAATTATGATGTATTCAGAGCAGGAAAACTGCATCCGTATCG
AGGGAAGTCGGAACGTGGCGGCCATTGCAGCTAGATTCCGTCTGATACTG
AAGACAATCGTGGAGAAACATAGTCGGT Coding sequence (CDS) from alignment at Sc0000149:656930..659007+ >transcript:BL97294_cuf2 ID=transcript:BL97294_cuf2|Name=transcript:BL97294_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=6210bp|location=Sequence derived from alignment at Sc0000149:656930..659007+ (Branchiostoma lanceolatum) TCTTGTACATCTCAGCCCGGCCAGAGTGAACTTCACATACGTGACGTCAT AGTTCAAGTTCAGATGGGAGACATTACCATGGAGCAAGTCGGTGCCATCG TCAATCCATCACAGAATAATCTTGACTTGGACAAAGGTGTAAGCAGAGCC ATATCGATGGCAGCCGGCCCTAGCGTCCAGAAGGAGTGTAGACAGTACAT CCGGGACAACTGGTCTCCCAAGGCAGGAGAGGTTATTGCAACAGGTGCTG GTCACCTGCCGTGCAAAGCGATTCTCCATCTCGTGCAACCAACAGCCAAA TATCTGCGGTCGGACGTGAAGAACTGCCTGCTGGTCGCGCACCAGATGAA CCTGCGATCGATCGCTTTCCCTGCGATGGGAACAGGAGGGTTTCACATCA AGCCTGAGCGGTCGGCGAGGTGCCTGATTGACGGCATCGTGGAGTTCGTG GAGGACTGGAGCCCCACCACACTGTCCATCATCAGGATTGTCATCCTCCA GGAGAGCATGTTACAGGCGTTCCACACGGCCGTCCACAGGAAGGCTTCGG AGGACACAGGGAAAGCGGCTCCATCGAAAGACACAAACCGCCTGGATAGG CTAAAAAACATAGCCACCGACAAGATGAAGCGTATAGCAAGGCGCCCAAA AGAGGAAACATCCTGGGTCACGGTCCAACTCCCCAAACCAGAACCGCCCA AAGAAGATGACTTCGAAGACGCTCTGCAGCCCGACGAAGTTCTGCTGCAC ATCTTCTGCCTTGATCAGACAAAGTTACAGAATGCCCGAGACACTGTGGA CGAATTTCTCCACCAGTACACAACTGTGGTGGTGATCAACGACGACAAGG AGACAGGGATCGCCCAACTCGTGAAGGAGGAGGTTAGATGGCTTCGGTTT TTGGGACGTGAGGAAAATGTGTCCATCGCAATCGAGCAGGAAAACTGCAT CCGTATCGAGGGAAGTCGGAACGTGGCGGCCATTGCAGCTAGATTCCGTC TGATACTGAAGACAATCGTGGAGAAACATAGTCGGTCTTGTACATCTCAG CCCGGCCAGAGTGAACTTCACATACGTGACGTCATAGTTCAAGTTCAGAT GGGAGACATTACCATGGAGCAAGTCGGTGCCATCGTCAATCCATCACAGA ATAATCTTGACTTGGACAAAGGTGTAAGCAGAGCCATATCGATGGCAGCC GGCCCTAGCGTCCAGAAGGAGTGTAGACAGTACATCCGGGACAACTGGTC TCCCAAGGCAGGAGAGGTTATTGCAACAGGTGCTGGTCACCTGCCGTGCA AAGCGATTCTCCATCTCGTGCAACCAACAGCCAAATATCTGCGGTCGGAC GTGAAGAACTGCCTGCTGGTCGCGCACCAGATGAACCTGCGATCGATCGC TTTCCCTGCGATGGGAACAGGAGGGTTTCACATCAAGCCTGAGCGGTCGG CGAGGTGCCTGATTGACGGCATCGTGGAGTTCGTGGAGGACTGGAGCCCC ACCACACTGTCCATCATCAGGATTGTCATCCTCCAGGAGAGCATGTTACA GGCGTTCCACACGGCCGTCCACAGGAAGGCTTCGGAGGACACAGGGAAAG CGGCTCCATCGAAAGACACAAACCGCCTGGATAGGCTAAAAAACATAGCC ACCGACAAGATGAAGCGTATAGCAAGGCGCCCAAAAGAGGAAACATCCTG GGTCACGGTCCAACTCCCCAAACCAGAACCGCCCAAAGAAGATGACTTCG AAGACGCTCTGCAGCCCGACGAAGTTCTGCTGCACATCTTCTGCCTTGAT CAGACAAAGTTACAGAATGCCCGAGACACTGTGGACGAATTTCTCCACCA GTACACAACTGTGGTGGTGATCAACGACGACAAGGAGACAGGGATCGCCC AACTCGTGAAGGAGGAGGTTAGATGGCTTCGGTTTTTGGGACGTGAGGAA AATGTGTCCATCGCAATCGAGCAGGAAAACTGCATCCGTATCGAGGGAAG TCGGAACGTGGCGGCCATTGCAGCTAGATTCCGTCTGATACTGAAGACAA TCGTGGAGAAACATAGTCGGTCTTGTACATCTCAGCCCGGCCAGAGTGAA CTTCACATACGTGACGTCATAGTTCAAGTTCAGATGGGAGACATTACCAT GGAGCAAGTCGGTGCCATCGTCAATCCATCACAGAATAATCTTGACTTGG ACAAAGGTGTAAGCAGAGCCATATCGATGGCAGCCGGCCCTAGCGTCCAG AAGGAGTGTAGACAGTACATCCGGGACAACTGGTCTCCCAAGGCAGGAGA GGTTATTGCAACAGGTGCTGGTCACCTGCCGTGCAAAGCGATTCTCCATC TCGTGCAACCAACAGCCAAATATCTGCGGTCGGACGTGAAGAACTGCCTG CTGGTCGCGCACCAGATGAACCTGCGATCGATCGCTTTCCCTGCGATGGG AACAGGAGGGTTTCACATCAAGCCTGAGCGGTCGGCGAGGTGCCTGATTG ACGGCATCGTGGAGTTCGTGGAGGACTGGAGCCCCACCACACTGTCCATC ATCAGGATTGTCATCCTCCAGGAGAGCATGTTACAGGCGTTCCACACGGC CGTCCACAGGAAGGCTTCGGAGGACACAGGGAAAGCGGCTCCATCGAAAG ACACAAACCGCCTGGATAGGCTAAAAAACATAGCCACCGACAAGATGAAG CGTATAGCAAGGCGCCCAAAAGAGGAAACATCCTGGGTCACGGTCCAACT CCCCAAACCAGAACCGCCCAAAGAAGATGACTTCGAAGACGCTCTGCAGC CCGACGAAGTTCTGCTGCACATCTTCTGCCTTGATCAGACAAAGTTACAG AATGCCCGAGACACTGTGGACGAATTTCTCCACCAGTACACAACTGTGGT GGTGATCAACGACGACAAGGAGACAGGGATCGCCCAACTCGTGAAGGAGG AGGTTAGATGGCTTCGGTTTTTGGGACGTGAGGAAAATGTGTCCATCGCA ATCGAGCAGGAAAACTGCATCCGTATCGAGGGAAGTCGGAACGTGGCGGC CATTGCAGCTAGATTCCGTCTGATACTGAAGACAATCGTGGAGAAACATA GTCGGTCTTGTACATCTCAGCCCGGCCAGAGTGAACTTCACATACGTGAC GTCATAGTTCAAGTTCAGATGGGAGACATTACCATGGAGCAAGTCGGTGC CATCGTCAATCCATCACAGAATAATCTTGACTTGGACAAAGGTGTAAGCA GAGCCATATCGATGGCAGCCGGCCCTAGCGTCCAGAAGGAGTGTAGACAG TACATCCGGGACAACTGGTCTCCCAAGGCAGGAGAGGTTATTGCAACAGG TGCTGGTCACCTGCCGTGCAAAGCGATTCTCCATCTCGTGCAACCAACAG CCAAATATCTGCGGTCGGACGTGAAGAACTGCCTGCTGGTCGCGCACCAG ATGAACCTGCGATCGATCGCTTTCCCTGCGATGGGAACAGGAGGGTTTCA CATCAAGCCTGAGCGGTCGGCGAGGTGCCTGATTGACGGCATCGTGGAGT TCGTGGAGGACTGGAGCCCCACCACACTGTCCATCATCAGGATTGTCATC CTCCAGGAGAGCATGTTACAGGCGTTCCACACGGCCGTCCACAGGAAGGC TTCGGAGGACACAGGGAAAGCGGCTCCATCGAAAGACACAAACCGCCTGG ATAGGCTAAAAAACATAGCCACCGACAAGATGAAGCGTATAGCAAGGCGC CCAAAAGAGGAAACATCCTGGGTCACGGTCCAACTCCCCAAACCAGAACC GCCCAAAGAAGATGACTTCGAAGACGCTCTGCAGCCCGACGAAGTTCTGC TGCACATCTTCTGCCTTGATCAGACAAAGTTACAGAATGCCCGAGACACT GTGGACGAATTTCTCCACCAGTACACAACTGTGGTGGTGATCAACGACGA CAAGGAGACAGGGATCGCCCAACTCGTGAAGGAGGAGGTTAGATGGCTTC GGTTTTTGGGACGTGAGGAAAATGTGTCCATCGCAATCGAGCAGGAAAAC TGCATCCGTATCGAGGGAAGTCGGAACGTGGCGGCCATTGCAGCTAGATT CCGTCTGATACTGAAGACAATCGTGGAGAAACATAGTCGGTCTTGTACAT CTCAGCCCGGCCAGAGTGAACTTCACATACGTGACGTCATAGTTCAAGTT CAGATGGGAGACATTACCATGGAGCAAGTCGGTGCCATCGTCAATCCATC ACAGAATAATCTTGACTTGGACAAAGGTGTAAGCAGAGCCATATCGATGG CAGCCGGCCCTAGCGTCCAGAAGGAGTGTAGACAGTACATCCGGGACAAC TGGTCTCCCAAGGCAGGAGAGGTTATTGCAACAGGTGCTGGTCACCTGCC GTGCAAAGCGATTCTCCATCTCGTGCAACCAACAGCCAAATATCTGCGGT CGGACGTGAAGAACTGCCTGCTGGTCGCGCACCAGATGAACCTGCGATCG ATCGCTTTCCCTGCGATGGGAACAGGAGGGTTTCACATCAAGCCTGAGCG GTCGGCGAGGTGCCTGATTGACGGCATCGTGGAGTTCGTGGAGGACTGGA GCCCCACCACACTGTCCATCATCAGGATTGTCATCCTCCAGGAGAGCATG TTACAGGCGTTCCACACGGCCGTCCACAGGAAGGCTTCGGAGGACACAGG GAAAGCGGCTCCATCGAAAGACACAAACCGCCTGGATAGGCTAAAAAACA TAGCCACCGACAAGATGAAGCGTATAGCAAGGCGCCCAAAAGAGGAAACA TCCTGGGTCACGGTCCAACTCCCCAAACCAGAACCGCCCAAAGAAGATGA CTTCGAAGACGCTCTGCAGCCCGACGAAGTTCTGCTGCACATCTTCTGCC TTGATCAGACAAAGTTACAGAATGCCCGAGACACTGTGGACGAATTTCTC CACCAGTACACAACTGTGGTGGTGATCAACGACGACAAGGAGACAGGGAT CGCCCAACTCGTGAAGGAGGAGGTTAGATGGCTTCGGTTTTTGGGACGTG AGGAAAATGTGTCCATCGCAATCGAGCAGGAAAACTGCATCCGTATCGAG GGAAGTCGGAACGTGGCGGCCATTGCAGCTAGATTCCGTCTGATACTGAA GACAATCGTGGAGAAACATAGTCGGTCTTGTACATCTCAGCCCGGCCAGA GTGAACTTCACATACGTGACGTCATAGTTCAAGTTCAGATGGGAGACATT ACCATGGAGCAAGTCGGTGCCATCGTCAATCCATCACAGAATAATCTTGA CTTGGACAAAGGTGTAAGCAGAGCCATATCGATGGCAGCCGGCCCTAGCG TCCAGAAGGAGTGTAGACAGTACATCCGGGACAACTGGTCTCCCAAGGCA GGAGAGGTTATTGCAACAGGTGCTGGTCACCTGCCGTGCAAAGCGATTCT CCATCTCGTGCAACCAACAGCCAAATATCTGCGGTCGGACGTGAAGAACT GCCTGCTGGTCGCGCACCAGATGAACCTGCGATCGATCGCTTTCCCTGCG ATGGGAACAGGAGGGTTTCACATCAAGCCTGAGCGGTCGGCGAGGTGCCT GATTGACGGCATCGTGGAGTTCGTGGAGGACTGGAGCCCCACCACACTGT CCATCATCAGGATTGTCATCCTCCAGGAGAGCATGTTACAGGCGTTCCAC ACGGCCGTCCACAGGAAGGCTTCGGAGGACACAGGGAAAGCGGCTCCATC GAAAGACACAAACCGCCTGGATAGGCTAAAAAACATAGCCACCGACAAGA TGAAGCGTATAGCAAGGCGCCCAAAAGAGGAAACATCCTGGGTCACGGTC CAACTCCCCAAACCAGAACCGCCCAAAGAAGATGACTTCGAAGACGCTCT GCAGCCCGACGAAGTTCTGCTGCACATCTTCTGCCTTGATCAGACAAAGT TACAGAATGCCCGAGACACTGTGGACGAATTTCTCCACCAGTACACAACT GTGGTGGTGATCAACGACGACAAGGAGACAGGGATCGCCCAACTCGTGAA GGAGGAGGTTAGATGGCTTCGGTTTTTGGGACGTGAGGAAAATGTGTCCA TCGCAATCGAGCAGGAAAACTGCATCCGTATCGAGGGAAGTCGGAACGTG GCGGCCATTGCAGCTAGATTCCGTCTGATACTGAAGACAATCGTGGAGAA ACATAGTCGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000149 | genome | Sc0000149:656930..659007 + |
Properties
Property Name | Value |
Transcript id | BL97294_cuf2 |
Biotype | protein_coding |
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