transcript:BL97277_cuf5 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97277_cuf5
Unique Nametranscript:BL97277_cuf5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97277_cuf5

>transcript:BL97277_cuf5-protein ID=transcript:BL97277_cuf5-protein|Name=transcript:BL97277_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=271bp
MRPGAPPVTIERGGITLQAQTIWGDQFGGQVFQTKNGSFHVPSKAALLGD
YTPHSVAIKLTQFEQNPFTWGRGEYQARSSVMELSLQQNNIPVAFNNLTE
DFYITIPGGSGNKPATTTITFPAPGNKSSSYHLLNLTNTAEGFLVTITPL
NKSVVYDVSGRYGGRPDDQNYNVSMETYILPEECALMKTLSGDEDTEKRE
ATMFIPGKDGPVDYYIKVQIRGPVTECDFEKRADVKESHADDFYAYQIQW
ARLSCVYWSETQEDWSTDGCT
Run BLAST on NCBI

mRNA from alignment at Sc0000012:5038359..5040774+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97277_cuf5 ID=transcript:BL97277_cuf5|Name=transcript:BL97277_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=2416bp|location=Sequence derived from alignment at Sc0000012:5038359..5040774+ (Branchiostoma lanceolatum)
CTCTGTTGGAGTCCGTTGGTTCTCTGCTTGAGGAACCAGAGAGAGATGCA
GAAGAGGTTGATGGGAAGCCTGCACCTGATCTCGAGGAAGACCAGAGTCT
CTCTCCAAAGGAGCGCCTTGAAAAGGCAAAACAAAAGGAGCAGGAGAACC
AAGCTGAGGTAACAAAAGTCATGATGCTTTGTGCAATGCTTGACTCAATG
TTTAATTTGTAGAGGTTTTTTTCAGGTTAATCTTCCACCCTGGATCATGA
CTCAAATCACACACTTTGGAAGCTGTTCTTCTTTGTTTGATTTTGCATCA
TGTGTAATTAACACTCAAAAAGGCTTCCGAATCGACTTTGTAATGTAGCA
CCAAAGAAATATTGAACCCTCTGACGGAAACTTTTCAGACCTATGTCCTG
ATCACAACAAATCCTGACTGTGCTTTACATAATTGTGCATACTAGTTACT
CTTAGTATATACATTTTGTACTTTATTTTAAAAAAAATTTTAAATTTTTT
TCATGCCTATCAATCTTCATTGTTGGTGTCTCTTTTCCAAAAAACAATTT
TCCTCAGAAAAATGTCATACTAAAATTGGCATCCTACACATTGTGTTTAT
AGTGTTTCAGGTTATTGAGGAAAAAAATAGATCATCTGAGCAAGACTAAC
TCATCATACTGTCTCCTAACGGTTACTTACAGAAACGAAGACTTGTCCAG
GAAAGTCGCCAGGTCCTGGATGGTCTGTACAACGCCATCATCGGCGCCAT
GAGGCCAGGAGCCCCGCCGGTAACCATCGAGAGGGGCGGCATCACGCTGC
AAGCTCAGACAATCTGGGGCGACCAGTTTGGAGGCCAGGTCTTTCAGACA
AAGAATGGGAGCTTCCATGTTCCGTCTAAAGCAGCGCTCTTAGGAGACTA
TACACCGCACAGCGTCGCTATTAAGGTATTTGTTTGAACCTTTGTTTATT
CATGATAAGCTCAAATCGGCGCGCAGGCCGCTTTTCATTGAGGTCATGAG
GGAAGAGGTAAGGGTCAGATACAATATAACAGAGATACACAGTCATTTGA
GTCCTAATAACTCTATCAACATATATCATTACATATTTATGGTACAACAA
AATACAATTTCTACAACATACAGCATAAAGTAGGGCGAAAGCTGGTTCAT
GGTCCGTGTCCGTTCGTTTAGTTCATTTCTGTTACTTCAAGAGTCTCTTA
AAGGAAGTCAGATTCGGAGCCGTACATGTGTCATGTCCTGGTTATCAGTG
ATCCGTATTTTTCCCTTCTTATATATCTGTGATGATATCAATCTTGGAGA
TTGTTTTTAAGATTTATTAAGATTAATTAAGTTAATGAAGTATAAAATTT
GTTATTTTTGTAGTTGACGCAGTTTGAACAGAACCCATTTACCTGGGGGC
GCGGGGAGTACCAGGCACGCTCGTCTGTCATGGAACTGTCACTCCAACAG
AACAACATCCCCGTGGCCTTCAACAACCTGACTGAAGACTTCTACATCAC
CATTCCGGGCGGCTCCGGAAACAAACCAGCGACAACAACCATCACCTTCC
CTGCCCCAGGAAACAAAAGTTCAAGCTACCATCTGCTGAACCTCACCAAC
ACCGCAGAAGGATTCCTGGTCACCATCACCCCACTGAATAAAAGTGTGGT
GTACGACGTTTCCGGTAGGTACGGCGGTCGCCCTGACGACCAAAACTACA
ACGTATCCATGGAGACGTATATCCTACCCGAGGAGTGTGCCTTGATGAAG
ACTCTGAGTGGCGATGAAGACACAGAGAAGAGAGAGGCAACAATGTTCAT
CCCCGGAAAAGATGGTCCTGTGGACTACTACATCAAGGTCCAAATACGTG
GTGAGTATTTTTCATGTTGTTTAATGCTACAAATACAAATTAGGTTAATA
CATGTTTGTCAGATGAAGGGGGTTGTCTTGTCCATAAAGATATCACTAAA
ACTAATATAATTGTTTTGTGATATCTTCTATTTTGTTGTGAAGGAATGTC
ACTCTGTACTTGAGATTTTAAGCATTGGTATTCTACATGTACATCAGTGT
GATATAAATGTGAAGTCTCATTCATAGAAAATGTGCCTAATATTTTCATG
AGCCCCTTCCACTGTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTCTTTGG
AATCTGCATAAGAAAAATACATCATATACTGTCTTGTGATGTTGACAACA
GGAGTCACCGGTGATATCCGAGAAGTTGTACACTTCTCAGCTCTGTCATA
AACTTCCTTTTTTCAGGACCAGTAACCGAATGTGACTTTGAGAAAAGAGC
CGACGTGAAGGAGTCACACGCCGATGACTTCTACGCCTACCAGATCCAGT
GGGCCCGTTTGAGCTGCGTCTACTGGAGCGAGACCCAGGAAGACTGGAGC
ACTGACGGCTGCACGG

Coding sequence (CDS) from alignment at Sc0000012:5038359..5040774+

>transcript:BL97277_cuf5 ID=transcript:BL97277_cuf5|Name=transcript:BL97277_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=2439bp|location=Sequence derived from alignment at Sc0000012:5038359..5040774+ (Branchiostoma lanceolatum)
ATGAGGCCAGGAGCCCCGCCGGTAACCATCGAGAGGGGCGGCATCACGCT
GCAAGCTCAGACAATCTGGGGCGACCAGTTTGGAGGCCAGGTCTTTCAGA
CAAAGAATGGGAGCTTCCATGTTCCGTCTAAAGCAGCGCTCTTAGGAGAC
TATACACCGCACAGCGTCGCTATTAAGTTGACGCAGTTTGAACAGAACCC
ATTTACCTGGGGGCGCGGGGAGTACCAGGCACGCTCGTCTGTCATGGAAC
TGTCACTCCAACAGAACAACATCCCCGTGGCCTTCAACAACCTGACTGAA
GACTTCTACATCACCATTCCGGGCGGCTCCGGAAACAAACCAGCGACAAC
AACCATCACCTTCCCTGCCCCAGGAAACAAAAGTTCAAGCTACCATCTGC
TGAACCTCACCAACACCGCAGAAGGATTCCTGGTCACCATCACCCCACTG
AATAAAAGTGTGGTGTACGACGTTTCCGGTAGGTACGGCGGTCGCCCTGA
CGACCAAAACTACAACGTATCCATGGAGACGTATATCCTACCCGAGGAGT
GTGCCTTGATGAAGACTCTGAGTGGCGATGAAGACACAGAGAAGAGAGAG
GCAACAATGTTCATCCCCGGAAAAGATGGTCCTGTGGACTACTACATCAA
GGTCCAAATACGTGGACCAGTAACCGAATGTGACTTTGAGAAAAGAGCCG
ACGTGAAGGAGTCACACGCCGATGACTTCTACGCCTACCAGATCCAGTGG
GCCCGTTTGAGCTGCGTCTACTGGAGCGAGACCCAGGAAGACTGGAGCAC
TGACGGCTGCACGATGAGGCCAGGAGCCCCGCCGGTAACCATCGAGAGGG
GCGGCATCACGCTGCAAGCTCAGACAATCTGGGGCGACCAGTTTGGAGGC
CAGGTCTTTCAGACAAAGAATGGGAGCTTCCATGTTCCGTCTAAAGCAGC
GCTCTTAGGAGACTATACACCGCACAGCGTCGCTATTAAGTTGACGCAGT
TTGAACAGAACCCATTTACCTGGGGGCGCGGGGAGTACCAGGCACGCTCG
TCTGTCATGGAACTGTCACTCCAACAGAACAACATCCCCGTGGCCTTCAA
CAACCTGACTGAAGACTTCTACATCACCATTCCGGGCGGCTCCGGAAACA
AACCAGCGACAACAACCATCACCTTCCCTGCCCCAGGAAACAAAAGTTCA
AGCTACCATCTGCTGAACCTCACCAACACCGCAGAAGGATTCCTGGTCAC
CATCACCCCACTGAATAAAAGTGTGGTGTACGACGTTTCCGGTAGGTACG
GCGGTCGCCCTGACGACCAAAACTACAACGTATCCATGGAGACGTATATC
CTACCCGAGGAGTGTGCCTTGATGAAGACTCTGAGTGGCGATGAAGACAC
AGAGAAGAGAGAGGCAACAATGTTCATCCCCGGAAAAGATGGTCCTGTGG
ACTACTACATCAAGGTCCAAATACGTGGACCAGTAACCGAATGTGACTTT
GAGAAAAGAGCCGACGTGAAGGAGTCACACGCCGATGACTTCTACGCCTA
CCAGATCCAGTGGGCCCGTTTGAGCTGCGTCTACTGGAGCGAGACCCAGG
AAGACTGGAGCACTGACGGCTGCACGATGAGGCCAGGAGCCCCGCCGGTA
ACCATCGAGAGGGGCGGCATCACGCTGCAAGCTCAGACAATCTGGGGCGA
CCAGTTTGGAGGCCAGGTCTTTCAGACAAAGAATGGGAGCTTCCATGTTC
CGTCTAAAGCAGCGCTCTTAGGAGACTATACACCGCACAGCGTCGCTATT
AAGTTGACGCAGTTTGAACAGAACCCATTTACCTGGGGGCGCGGGGAGTA
CCAGGCACGCTCGTCTGTCATGGAACTGTCACTCCAACAGAACAACATCC
CCGTGGCCTTCAACAACCTGACTGAAGACTTCTACATCACCATTCCGGGC
GGCTCCGGAAACAAACCAGCGACAACAACCATCACCTTCCCTGCCCCAGG
AAACAAAAGTTCAAGCTACCATCTGCTGAACCTCACCAACACCGCAGAAG
GATTCCTGGTCACCATCACCCCACTGAATAAAAGTGTGGTGTACGACGTT
TCCGGTAGGTACGGCGGTCGCCCTGACGACCAAAACTACAACGTATCCAT
GGAGACGTATATCCTACCCGAGGAGTGTGCCTTGATGAAGACTCTGAGTG
GCGATGAAGACACAGAGAAGAGAGAGGCAACAATGTTCATCCCCGGAAAA
GATGGTCCTGTGGACTACTACATCAAGGTCCAAATACGTGGACCAGTAAC
CGAATGTGACTTTGAGAAAAGAGCCGACGTGAAGGAGTCACACGCCGATG
ACTTCTACGCCTACCAGATCCAGTGGGCCCGTTTGAGCTGCGTCTACTGG
AGCGAGACCCAGGAAGACTGGAGCACTGACGGCTGCACG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97277gene:BL97277Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97277_cuf5transcript:BL97277_cuf5-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97277_cuf5-E1BL97277_cuf5-E1-1564476830-113265Branchiostoma lanceolatumexon
BL97277_cuf5-E2BL97277_cuf5-E2-1564476830-113268Branchiostoma lanceolatumexon
BL97277_cuf5-E3BL97277_cuf5-E3-1564476830-113270Branchiostoma lanceolatumexon
BL97277_cuf5-E4BL97277_cuf5-E4-1564476830-113273Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000012genomeSc0000012:5038359..5040774 +
Properties
Property NameValue
Transcript idBL97277_cuf5
Biotypeprotein_coding