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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97222_cuf5 >transcript:BL97222_cuf5-protein ID=transcript:BL97222_cuf5-protein|Name=transcript:BL97222_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=194bp
LALGSRGRTAIAEAIADFHKHTCLRFIQRTDEKAYIKFYRGSGCSSPVGY
HGRVNAISLASGCWHKGIVIHEIMHTLGFFHEQSRPDRDDYVEILWDNIQ
GSMSYNFNKQAATEIDSLGTPYDYNSVMHYGKTAFGGGRVTIKTKDPSKE
NVIGSRMGLSDIDKKQLNLLYKCGGSGSLVASSTASPTEAPSCE Run BLAST on NCBI mRNA from alignment at Sc0000031:1024851..1028163- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97222_cuf5 ID=transcript:BL97222_cuf5|Name=transcript:BL97222_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=3313bp|location=Sequence derived from alignment at Sc0000031:1024851..1028163- (Branchiostoma lanceolatum)
TTAGCATTAGGATCACGTGGAAGGACCGCAATCGCTGAAGCTATCGCAGA
TTTCCACAAGCACACCTGCCTCCGCTTCATCCAAAGAACCGACGAGAAAG
CCTACATCAAGTTCTACCGAGGCAGCGGGTAAAACTGTTACTTGTTTTCA
GGATCAGGACGATGCGGCCATTCACCAATTCGGTTCGGTCAACTCTGCCC
AACACCCCGGTCAACTCGGACAAGGTTAGGGATAGCGTGTTGGGCCGAGT
TGACCAGGGTGTTGCGCCGAGTTGGTCTGATTAGCCACGGGCCGAGTTGG
TAAAAAGCCGAAGCGTTTGACATCGCTTGTTTTCTCATAGACTGGTTTTA
CTAATGAGTGGGATAGGCTTGGATAGGTTTCAAAGTTGAGGGATGAGGGA
AATCTGTTAATTATTAGCAATAAACGCTGTTCTGGACAAGTTTTTTGTGA
GTACTAAAGTGAACTCTATGAATTGTTAATTATCAGGAATGTGACAAACG
TATAGTATTCCTCTAGACATGAAATAACATGAACCCGAAGCTCGACATAA
ACATCCTGGCGCATTGCTGTCCATTAACTTTGCAGCTGAATGAATGTGAG
AGAGGCTGTCTGGAATCTTTTTATCCCAACATTAGCGATGGCGGATGGCT
AAGGAAAGTCCCTTGATTTGAAGGTTAGACATCCAGTATTTAACGACAAC
TCAAACTCTGCAACTGGATATTGGATCAAATTCGGAGATTTACTTTCGGG
CGTTTTGAGTGACATCAGACTCTCTTCAGCGTCAAATAGAATGTTCTCAC
TAGACTGAACATTCTAGTGATGCTGAATAAGAGTAACGGATGTTATCTCC
GTATCTTATCCAGTTGTGGGTATTGAATTGTCTTTGAAGTTCTTTATATT
CCGTGTGGTAACAGGTGTTCTTCTCCTGTGGGATACCATGGACGTGTTAA
CGCGATCTCTCTTGCGTCCGGCTGCTGGCACAAAGGCATAGTGATCCACG
AGATCATGCACACGCTCGGCTTCTTCCACGAGCAGTCCCGGCCCGACAGG
GACGACTACGTCGAGATATTGTGGGACAATATTCAAGGAAGTAAGTGTAA
AATTGCTGTTTTATTCATGTATAACAACTACTGCAACAGTTTTGCCTTTT
CCGCATCGATTAGTTCGTATTACTATCACGAATGCTTTTTATTGGAAATG
ATACATCGCGAATGATGTTCCTTCATTAGATGTGTTCTGTTATTGTACAT
AATTATTTAACAGTCCAACTGTGATCTAACACTTGTGACATTTCACTGGT
CGACTAAGGGACTAAAAAGGCCCTGCACCAAGTCATTAGCGTTGCATACA
GATACACGTAAATGAATGATTTAAAGACAAGTAGGTTAAAGTCACTGACA
TGCGTCCCTTTTCTCATTGAGCGGATGAAAAAAAAAGAATTTAAGACGAC
TATTTTGGAATCTGCAGGCATGAGCTACAACTTCAATAAACAAGCCGCTA
CTGAGATCGACTCGCTCGGGACACCTTATGACTATAATTCCGTCATGCAC
TACGGGAAAACCGCTTTCGGGGGCGGGAGAGTGACCATCAAGACCAAGGA
GTAAGTCTTCTTTATTTCTCTGCACTTGAGTTTAATACTTATCATGATGC
ATGCAGGCACGGTATGGTGGGAACAGATTAAGGCAGCAGTATTTTGCCCG
TGGTTAAGGGCCCAAAAGTGAAATGATTCGAAATCTTAGAGCAGGGTACA
CAAAGAAGGCATAAGACATCGAATATGTTTGACTTCCGGGTACAAAACAT
ATCGATTAACTATCAATTTTGCCACCTCGATTCCTTTTAAAACGCAGTTT
TATATGAGAGCTGCAGCAGACGCACAGTAGTGTTGACCTCTTGGCTTGGC
GTCGCTGACGAAGATTTCAGGGGTTTGGTCTTGGGTCAACTGACCTATTC
AGGCGCTAATTTACGTAATTTCACCCATACAATCTCATACCTGACATTTT
CCATAAAGTACAGCATCCCCCTCGCTGACGTGCACGGAAAAATCTCTACG
TTTTTGATAAGCATTTTTTTTTGACGCACTATTGTATACCCGAACTACTA
TAGGGGCGAGGATCGCGAATAAATACTGTGTNGAGGATCGCGAATGAATA
CTGTGTTGTACGATCTAAACATACAACCTTATCTTTCGTTTGATGTTTAT
CTGGCTTGTTGAGGCACCATGTATAGCTAGTGAGAGTCACATGTATAGCT
GGCAGAAGTCACATGTATAGCTAGCTGGTCGAAGGCTGAAACCTCCTTCA
TTTAACATACTCTCGGTATGAAACACAAGGATGGCTGTCAGTAAGATCAC
GGAAACAGTATATTTACAAGCACATAACTTTTTTCACCATCCACCACCTC
CCACCCCCACCCCCAGCCCCAGCAAGGAAAATGTGATCGGAAGCAGAATG
GGACTCAGCGATATCGACAAAAAACAGCTGAATTTGCTCTACAAATGTGG
TGAGTTGAAGAAGCCTCCTCTTTTACCTTAATATCACCTGTTCAGTGTTG
CACCGCGGATCCCAGCTCGAGATGGGAGCTGTCAGAACACGGTGTATTCC
GTATGGACCGAAGAACCAGTCCGCGTCGGATGCTCGAAGGCCTACTCTTT
ATCCGTGACTCCTGCCCCTCCACTTCACTTCGACCTTGTTGAAAAGCGGC
CATGTGGCCAAACAAGTATTTCGAAGAAAAATAAAGGCTTTGACTTGACT
TTGACTTGACTATCCAACCCGAGGGAGGACTGGGACCGAGGGCGATGCGG
AATACATCGTGTTGTATTTTATTTATGTCATGCCCACCCGAAAAAATACA
AATTTCAATGCGAAATGCGCCGGATAAAAGTTTGCGTCCTCGAACGAAAG
ATGTAACAACATCAAATCCAACGTCTGAATCCGGTATTCGAATTTTCGAC
AGCCCTGCGCTTGGTGCATGGGAAGCGCGTTCGAATTATTCAATGGAAGT
CCGGGCAATACGGCAAAATAAAGACCGGTCCGAAACACCCGTGTCGAACG
TTATCCCGGCCCAGATATGACATAACATTAGATATGCATGTAAGATGTCA
ACTCCAGCTATTAACTTTAAAGATTCCCATACTTGTAACATGTGTGAGGT
AGCTAAAAGTGAACATCACCATGCAAAGAATTCACAAAGCCTCTAAATAT
TTTTAATGGAGGTGTGATGTCTTCGAACTCTTGTTATTTCTATTGATACA
GGTGGTAGTGGAAGTCTTGTTGCATCTTCCACTGCATCTCCCACTGAAGC
TCCCAGCTGTGAG Coding sequence (CDS) from alignment at Sc0000031:1024851..1028163- >transcript:BL97222_cuf5 ID=transcript:BL97222_cuf5|Name=transcript:BL97222_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=2910bp|location=Sequence derived from alignment at Sc0000031:1024851..1028163- (Branchiostoma lanceolatum)
TTAGCATTAGGATCACGTGGAAGGACCGCAATCGCTGAAGCTATCGCAGA
TTTCCACAAGCACACCTGCCTCCGCTTCATCCAAAGAACCGACGAGAAAG
CCTACATCAAGTTCTACCGAGGCAGCGGGTGTTCTTCTCCTGTGGGATAC
CATGGACGTGTTAACGCGATCTCTCTTGCGTCCGGCTGCTGGCACAAAGG
CATAGTGATCCACGAGATCATGCACACGCTCGGCTTCTTCCACGAGCAGT
CCCGGCCCGACAGGGACGACTACGTCGAGATATTGTGGGACAATATTCAA
GGAAGCATGAGCTACAACTTCAATAAACAAGCCGCTACTGAGATCGACTC
GCTCGGGACACCTTATGACTATAATTCCGTCATGCACTACGGGAAAACCG
CTTTCGGGGGCGGGAGAGTGACCATCAAGACCAAGGACCCCAGCAAGGAA
AATGTGATCGGAAGCAGAATGGGACTCAGCGATATCGACAAAAAACAGCT
GAATTTGCTCTACAAATGTGGTGGTAGTGGAAGTCTTGTTGCATCTTCCA
CTGCATCTCCCACTGAAGCTCCCAGCTGTGAGTTAGCATTAGGATCACGT
GGAAGGACCGCAATCGCTGAAGCTATCGCAGATTTCCACAAGCACACCTG
CCTCCGCTTCATCCAAAGAACCGACGAGAAAGCCTACATCAAGTTCTACC
GAGGCAGCGGGTGTTCTTCTCCTGTGGGATACCATGGACGTGTTAACGCG
ATCTCTCTTGCGTCCGGCTGCTGGCACAAAGGCATAGTGATCCACGAGAT
CATGCACACGCTCGGCTTCTTCCACGAGCAGTCCCGGCCCGACAGGGACG
ACTACGTCGAGATATTGTGGGACAATATTCAAGGAAGCATGAGCTACAAC
TTCAATAAACAAGCCGCTACTGAGATCGACTCGCTCGGGACACCTTATGA
CTATAATTCCGTCATGCACTACGGGAAAACCGCTTTCGGGGGCGGGAGAG
TGACCATCAAGACCAAGGACCCCAGCAAGGAAAATGTGATCGGAAGCAGA
ATGGGACTCAGCGATATCGACAAAAAACAGCTGAATTTGCTCTACAAATG
TGGTGGTAGTGGAAGTCTTGTTGCATCTTCCACTGCATCTCCCACTGAAG
CTCCCAGCTGTGAGTTAGCATTAGGATCACGTGGAAGGACCGCAATCGCT
GAAGCTATCGCAGATTTCCACAAGCACACCTGCCTCCGCTTCATCCAAAG
AACCGACGAGAAAGCCTACATCAAGTTCTACCGAGGCAGCGGGTGTTCTT
CTCCTGTGGGATACCATGGACGTGTTAACGCGATCTCTCTTGCGTCCGGC
TGCTGGCACAAAGGCATAGTGATCCACGAGATCATGCACACGCTCGGCTT
CTTCCACGAGCAGTCCCGGCCCGACAGGGACGACTACGTCGAGATATTGT
GGGACAATATTCAAGGAAGCATGAGCTACAACTTCAATAAACAAGCCGCT
ACTGAGATCGACTCGCTCGGGACACCTTATGACTATAATTCCGTCATGCA
CTACGGGAAAACCGCTTTCGGGGGCGGGAGAGTGACCATCAAGACCAAGG
ACCCCAGCAAGGAAAATGTGATCGGAAGCAGAATGGGACTCAGCGATATC
GACAAAAAACAGCTGAATTTGCTCTACAAATGTGGTGGTAGTGGAAGTCT
TGTTGCATCTTCCACTGCATCTCCCACTGAAGCTCCCAGCTGTGAGTTAG
CATTAGGATCACGTGGAAGGACCGCAATCGCTGAAGCTATCGCAGATTTC
CACAAGCACACCTGCCTCCGCTTCATCCAAAGAACCGACGAGAAAGCCTA
CATCAAGTTCTACCGAGGCAGCGGGTGTTCTTCTCCTGTGGGATACCATG
GACGTGTTAACGCGATCTCTCTTGCGTCCGGCTGCTGGCACAAAGGCATA
GTGATCCACGAGATCATGCACACGCTCGGCTTCTTCCACGAGCAGTCCCG
GCCCGACAGGGACGACTACGTCGAGATATTGTGGGACAATATTCAAGGAA
GCATGAGCTACAACTTCAATAAACAAGCCGCTACTGAGATCGACTCGCTC
GGGACACCTTATGACTATAATTCCGTCATGCACTACGGGAAAACCGCTTT
CGGGGGCGGGAGAGTGACCATCAAGACCAAGGACCCCAGCAAGGAAAATG
TGATCGGAAGCAGAATGGGACTCAGCGATATCGACAAAAAACAGCTGAAT
TTGCTCTACAAATGTGGTGGTAGTGGAAGTCTTGTTGCATCTTCCACTGC
ATCTCCCACTGAAGCTCCCAGCTGTGAGTTAGCATTAGGATCACGTGGAA
GGACCGCAATCGCTGAAGCTATCGCAGATTTCCACAAGCACACCTGCCTC
CGCTTCATCCAAAGAACCGACGAGAAAGCCTACATCAAGTTCTACCGAGG
CAGCGGGTGTTCTTCTCCTGTGGGATACCATGGACGTGTTAACGCGATCT
CTCTTGCGTCCGGCTGCTGGCACAAAGGCATAGTGATCCACGAGATCATG
CACACGCTCGGCTTCTTCCACGAGCAGTCCCGGCCCGACAGGGACGACTA
CGTCGAGATATTGTGGGACAATATTCAAGGAAGCATGAGCTACAACTTCA
ATAAACAAGCCGCTACTGAGATCGACTCGCTCGGGACACCTTATGACTAT
AATTCCGTCATGCACTACGGGAAAACCGCTTTCGGGGGCGGGAGAGTGAC
CATCAAGACCAAGGACCCCAGCAAGGAAAATGTGATCGGAAGCAGAATGG
GACTCAGCGATATCGACAAAAAACAGCTGAATTTGCTCTACAAATGTGGT
GGTAGTGGAAGTCTTGTTGCATCTTCCACTGCATCTCCCACTGAAGCTCC
CAGCTGTGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000031 | genome | Sc0000031:1024851..1028163 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97222_cuf5 |
| Biotype | protein_coding |
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