|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97211_cuf12 >transcript:BL97211_cuf12-protein ID=transcript:BL97211_cuf12-protein|Name=transcript:BL97211_cuf12|organism=Branchiostoma lanceolatum|type=polypeptide|length=170bp
MAGLPRSLGGRATLLVVLGLLLTPLLAESTGSAADAAKAARREQLFQKVR AQVDKILQKAIRTKRNVVRIRVGFKVCSTKEAQPEIQRRITDAVDSGRIG GFSTEPGSTRFGNLEYYAAYRLTMGFHDDLRNETSMRYTAVKDDIFVNAS SELALVRGVAKVDLDEFRPG Run BLAST on NCBI mRNA from alignment at Sc0000054:80753..85413- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97211_cuf12 ID=transcript:BL97211_cuf12|Name=transcript:BL97211_cuf12|organism=Branchiostoma lanceolatum|type=mRNA|length=4661bp|location=Sequence derived from alignment at Sc0000054:80753..85413- (Branchiostoma lanceolatum) GCCGACTTAGAGAGACGGATCCGCAGTGAGCTCGTTTACCGTGCAACATG
GCGGGTCTTCCGAGGAGTTTGGGAGGCCGAGCGACCTTGTTGGTCGTGCT
GGGTCTCTTGTTGACTCCGTTACTGGCTGAATCGACAGGTGAGAAAGTTT
GGGCGTATTGAACCACTTTGGACTGTACAACTTCTGTTTACAAGGTCATG
TGTAGTGTTGTCAAAGCACGACTGTGAGATACTGAAATTGAGTTTAAAAC
GACAGAGAAGAAAATCTGGACTGGTCATTCTCTGAAAGGTGTGTTATAAT
GGCCAGAGTGAATAGAAATATCATTGTTCTTTTAATTTCCCTGCGTGAAA
CAGTTTGGCCAAATTGGTAAACCCCAGTGCAGTCCACTTTCACAATTGAG
AGGTGGACTGCACTGGGCGATACGACTTCCCTATACGACTTTCTNCGACT
TCCCTGTACGACTTTCTCTACCCTATCCCAGGGAGGGGAACTTTTCTATC
ATTTGTTTATTGGTTTACGATCTCCTCTCCGATTTAGCTTAATTACCGAT
AGCATTAATCTCACGGTAAAGGTTGTATCTGTGTGTATATTTGCTTGAAG
TTACTAGCATTAAACAAAATTTACGTGGAATTTGGACGCCCTAACATTGA
GAACAGACCGACATTTCTGTACCTATACTTGTTCAAAAATCGTTTGTTGA
TGTCAGAATGGTGGTGCAACATATTCGGTACACGTGCGCCCAGGTTTCCT
TCTTGCAGCTTGCTGCTCAAGTATCGAAAATGATTTAAGACAGACACTTC
GTCGTCACTTTGTGCAGAAAATATTATACATGTATTCACTAAAGAATAAG
TCAACACATGGGTGTGCCGTATTTTGCTGATAACCTTTGTAACCCTTTGT
CGTATAAAAAGGGGAACCTCCCATTGGTTGTAAACCTCCCTCGTCGTTTA
AAGTCGTCTTGTCCTTTCTCTGGGCCGGGTCTACTGGCCAAAGGTAGCTT
TTTTACACCGTTTATTCGAACTCGGATCTAGAGTCCAACACGCACTTTTT
CTCGGTTTTTGTCTGTTTTGGGACGTTTTCCCACATATATGAGTCATCAA
GGTTATACCCCTGGAGACATGATTAGATCTTGTTGAACGAGTACTGAGCG
AGGTCAACCCAAACATGAGCCAGTATACTTAGTTTACTTTCATACAATGC
TGTCGCTTGTTTTATGTCAAATCAGGGACAATGGTACATAGATTTTATGC
AAGACTTCTAGCAACTAGCTTGAAACTAACAACGTTTACTAAGATCTAGA
ATAAATTGTAGACCTTTTTCAGATCCATGTTTTTTTTAATAAGCAGGAAC
CGAATTGGAGTTTAAAACCCAGTAAATCCCTTGTTTGAACAGCTAGGCTA
GGTTCATTTGTCCAAAAGAGCTGCATGTGTGTTGCCTGTGGGGCTTGTAT
TTTGAGACAATGAGCAGGAAAATCTTCAAATAGTCCAATCGCACGAACAA
CATAGCCCTGATTTCCAAATAGAAAGTTAGTGATTTGCAATGCCCACACG
CGGGAGCTCGACATTTTAAATGTCAAAAGCCATAAGCCATACGTCATGAT
GTTGTCATACATGGTCGGCGTTTCAGTGGTTGAACAATTTTGACGCAAAC
GAAGGAGTATGTGTCATAACAATTGTGCAAGGTTTTAAACTGAAGTGCCA
AGTTCTATATCTTGATGAAAAACCTTTGACCAATATTTTTTCGCCAATTA
TGAAAGACAGGAGAACATTCACTTGACTAATACTGTGAGCGCTACGTCAT
AAAAATACTTCTCAGCCTAATACCATATACCTTGAAAAATGATACAAGAT
GACATACAATATCATGGGAGATGTACGTCACTGTCGACCCACTATCAGTG
CAGACTAACTGACCCAACAGCAGAAGCTGGGGGTGTTCTATCCACCTATC
AAACGATGAAATTGGGACAACAATGTCAAATACAATGAAGCACAAAAATG
ACCGTTCTTTCTTGAATGAACGTTTCTCCAGGTTCTGCTGCAGACGCCGC
CAAAGCCGCGCGTCGTGAGCAGCTGTTTCAGAAGGTTCGGGCTCAAGTGG
ACAAAATCCTGCAGAAAGCCATCCGCACCAAACGCAACGTTGTGTAAGTA
CAAGTCGGCTTAAGTCACCGACGAAAGATAGCGGATGCTGTCTGAAACGT
CTGACTGTTTCAAAATGTTATCCAGTTGCTTGAGTAACTGTTATTTGGAG
AGTCAGTTAGATTTTTATGCCCTATACGTTTTGAAATCGCCGAGACAATC
GTTTTGACACCTGCAAAAGGTCTTTGAGTTTAAGCTTGTTAAACGATGAA
GCAATCTGCGCTGATTCCTTTAACTCTCACTGTGACTTTAAGTGCATACT
GACAGAACAAAATCTTTCCACGACAACGGACATCACAAATGTATCGGACA
AGCCTGATACTGGACTAATATCAAACCTAAATGTTTTCCATAGGCGGATC
CGGGTGGGCTTTAAGGTATGCTCCACGAAAGAGGCCCAGCCGGAGATACA
GCGGCGTATCACTGACGCTGTTGACTCAGGCCGCATCGGCGGCTTTAGCA
CCGAGCCGGGGTCGACGCGATTCGGTAAGTTATCGTCATCGCTGGCGCTA
GATGTTAGAGGTGAACGTGTTGTAGTTGTAGGTAGGTAAAAATCCCCGTT
TAGACATACATTTTAATAACTTACGAGTTGCCTACTTCGTTCAAGTGAAC
GTGTTGTATATGATAACTAGAGTTCCACGAACACATTATCTTCGCCAAAT
AATCAAGGCTTATTATGGAGAGCGATTGATATTTACGTGCTTATCACCCC
CTGCAAAGTTGATCATGCACCATACCATTTGGAAGTTATGATGGGGCGAA
TGAGTCCAGTCTAGATGGGGTTAAAAATCGTTTGGTGGTACAGGACTAGT
ATATGTGTAGAGTGTGCTGATACAAATGTATATGTTATAACTGGTCATGA
AAAAATATGAGTATGATGATATTATATGGGCCACAAAGGTTCGATATTGC
AGTGTTGTAAGTTGAAAGTGATGATGAAATGGTACAGTCAATATATATGA
ATAGAATAGATCTTTATTCCATATCATACACATTTTGAAAGACATAGTAC
ATAGTACATTTACATGTGACTTTTCCGCACCTAGCAGTGGTGCAGTTTTG
GTGAAATTTATGAAATTCATAAATATCATAATATCATAATATCATAATAT
CATAATATCATAATATCATAATATCATAATATCATAATATCATAATATCA
TAATATCATAATATCATAATATCATAATATCATAATATCATAATATCATA
ATATCATAATATCATAATATCATAATATCATAATATCATAATATCATAAT
ATCATAATATCATAATATCATAATATCATAATATCATAATATCATAATAT
CATAATATCATAATATCATAATATCATAATATCATAATATCATAATATCA
TAATATCATAATATCATAATATCATAATATCATAATATCATAATATCATA
ATATCATAATATCATAATATCATAATATCATAATATCATAATATCATAAT
ATCATAATATCATAATATCATAATATCATAATATCATAATATGATATTAT
TACAGTAAAAAGGGTTAGCTTCCAACTTTGACATGTTCAGACTTTACAGA
GTATAATCCTTTACAGAGAAATATCCTCGGCGAAGATAATTAACGTTTGC
ACATTCATTTTAGCACTTTACAACCCAAGGACTGCCTACTTGGTTCTTTG
CTATGTCAAAAAGCAATATTCAAAGTGTTTAATGACGTTGTGTGTCAGGC
TAACCGTTGACCTTTGATTGCAAAAGGGAACTTGGAGTACTACGCAGCCT
ATCGATTAACCATGGGGTTCCACGATGATCTGCGCAATGAAACATCCATG
CGGTACACAGCAGTCAAAGACGACATTTTTGTGGTACGAATTCATATACA
ATGCTTTATTTCCTTTATTTGTATGGTAGGCATATCTTTCTTACTTATTT
TACCTGTCACAGGAAATAGCAGTATGGGGGAAAGACGAAAAGAGCTGAAG
CAAAAGTGTACATGTTGTACTTCTTACTTGTTGAGGTACCTCTTGACAAA
AATGTTGACAACTTTGAAATGTGAAGAGGAAAAGAAACAGAGACAAAGTA
GACAATGTAATGTCACAATCAGTGTAAAGCTAGTGCTAAGTTAAAAAGTG
GACCAGTATCTTTGTGGTTTCTACAGACACGAGGTACAAAAGGTGCTAAA
TACATTTTTAACGTTACATACGTTAAACAATTTTCCAATAAAAAACGTCC
TACATGTCTGTGTATATTGGTTAAGCAGAAAAACCAAGATACAGATTCCA
TTTGAAAGCTGGTAATATATTTGAATATATATCTTTTTTTTCGATTTGTA
GAATGCCTCATCTGAGCTGGCGCTTGTGAGAGGAGTAGCCAAGGTGGACT
TGGACGAGTTCAGGCCAGGGTGAGTTGGGCTGGATCTTTGTGAGCTTGTC
TATTCTTGTTGAATATTTTTTTGTTCCTTCACAGTTCTCACGAAACTTTT
CCGTTTGATTTTTCTGCTCTGGAAACAATCAATAACGTTACAGGTTGTTG
ATGCAACGAAC Coding sequence (CDS) from alignment at Sc0000054:80753..85413- >transcript:BL97211_cuf12 ID=transcript:BL97211_cuf12|Name=transcript:BL97211_cuf12|organism=Branchiostoma lanceolatum|type=CDS|length=2565bp|location=Sequence derived from alignment at Sc0000054:80753..85413- (Branchiostoma lanceolatum) ATGGCGGGTCTTCCGAGGAGTTTGGGAGGCCGAGCGACCTTGTTGGTCGT GCTGGGTCTCTTGTTGACTCCGTTACTGGCTGAATCGACAGGTTCTGCTG CAGACGCCGCCAAAGCCGCGCGTCGTGAGCAGCTGTTTCAGAAGGTTCGG GCTCAAGTGGACAAAATCCTGCAGAAAGCCATCCGCACCAAACGCAACGT TGTGCGGATCCGGGTGGGCTTTAAGGTATGCTCCACGAAAGAGGCCCAGC CGGAGATACAGCGGCGTATCACTGACGCTGTTGACTCAGGCCGCATCGGC GGCTTTAGCACCGAGCCGGGGTCGACGCGATTCGGGAACTTGGAGTACTA CGCAGCCTATCGATTAACCATGGGGTTCCACGATGATCTGCGCAATGAAA CATCCATGCGGTACACAGCAGTCAAAGACGACATTTTTGTGAATGCCTCA TCTGAGCTGGCGCTTGTGAGAGGAGTAGCCAAGGTGGACTTGGACGAGTT CAGGCCAGGGTGAATGGCGGGTCTTCCGAGGAGTTTGGGAGGCCGAGCGA CCTTGTTGGTCGTGCTGGGTCTCTTGTTGACTCCGTTACTGGCTGAATCG ACAGGTTCTGCTGCAGACGCCGCCAAAGCCGCGCGTCGTGAGCAGCTGTT TCAGAAGGTTCGGGCTCAAGTGGACAAAATCCTGCAGAAAGCCATCCGCA CCAAACGCAACGTTGTGCGGATCCGGGTGGGCTTTAAGGTATGCTCCACG AAAGAGGCCCAGCCGGAGATACAGCGGCGTATCACTGACGCTGTTGACTC AGGCCGCATCGGCGGCTTTAGCACCGAGCCGGGGTCGACGCGATTCGGGA ACTTGGAGTACTACGCAGCCTATCGATTAACCATGGGGTTCCACGATGAT CTGCGCAATGAAACATCCATGCGGTACACAGCAGTCAAAGACGACATTTT TGTGAATGCCTCATCTGAGCTGGCGCTTGTGAGAGGAGTAGCCAAGGTGG ACTTGGACGAGTTCAGGCCAGGGTGAATGGCGGGTCTTCCGAGGAGTTTG GGAGGCCGAGCGACCTTGTTGGTCGTGCTGGGTCTCTTGTTGACTCCGTT ACTGGCTGAATCGACAGGTTCTGCTGCAGACGCCGCCAAAGCCGCGCGTC GTGAGCAGCTGTTTCAGAAGGTTCGGGCTCAAGTGGACAAAATCCTGCAG AAAGCCATCCGCACCAAACGCAACGTTGTGCGGATCCGGGTGGGCTTTAA GGTATGCTCCACGAAAGAGGCCCAGCCGGAGATACAGCGGCGTATCACTG ACGCTGTTGACTCAGGCCGCATCGGCGGCTTTAGCACCGAGCCGGGGTCG ACGCGATTCGGGAACTTGGAGTACTACGCAGCCTATCGATTAACCATGGG GTTCCACGATGATCTGCGCAATGAAACATCCATGCGGTACACAGCAGTCA AAGACGACATTTTTGTGAATGCCTCATCTGAGCTGGCGCTTGTGAGAGGA GTAGCCAAGGTGGACTTGGACGAGTTCAGGCCAGGGTGAATGGCGGGTCT TCCGAGGAGTTTGGGAGGCCGAGCGACCTTGTTGGTCGTGCTGGGTCTCT TGTTGACTCCGTTACTGGCTGAATCGACAGGTTCTGCTGCAGACGCCGCC AAAGCCGCGCGTCGTGAGCAGCTGTTTCAGAAGGTTCGGGCTCAAGTGGA CAAAATCCTGCAGAAAGCCATCCGCACCAAACGCAACGTTGTGCGGATCC GGGTGGGCTTTAAGGTATGCTCCACGAAAGAGGCCCAGCCGGAGATACAG CGGCGTATCACTGACGCTGTTGACTCAGGCCGCATCGGCGGCTTTAGCAC CGAGCCGGGGTCGACGCGATTCGGGAACTTGGAGTACTACGCAGCCTATC GATTAACCATGGGGTTCCACGATGATCTGCGCAATGAAACATCCATGCGG TACACAGCAGTCAAAGACGACATTTTTGTGAATGCCTCATCTGAGCTGGC GCTTGTGAGAGGAGTAGCCAAGGTGGACTTGGACGAGTTCAGGCCAGGGT GAATGGCGGGTCTTCCGAGGAGTTTGGGAGGCCGAGCGACCTTGTTGGTC GTGCTGGGTCTCTTGTTGACTCCGTTACTGGCTGAATCGACAGGTTCTGC TGCAGACGCCGCCAAAGCCGCGCGTCGTGAGCAGCTGTTTCAGAAGGTTC GGGCTCAAGTGGACAAAATCCTGCAGAAAGCCATCCGCACCAAACGCAAC GTTGTGCGGATCCGGGTGGGCTTTAAGGTATGCTCCACGAAAGAGGCCCA GCCGGAGATACAGCGGCGTATCACTGACGCTGTTGACTCAGGCCGCATCG GCGGCTTTAGCACCGAGCCGGGGTCGACGCGATTCGGGAACTTGGAGTAC TACGCAGCCTATCGATTAACCATGGGGTTCCACGATGATCTGCGCAATGA AACATCCATGCGGTACACAGCAGTCAAAGACGACATTTTTGTGAATGCCT CATCTGAGCTGGCGCTTGTGAGAGGAGTAGCCAAGGTGGACTTGGACGAG TTCAGGCCAGGGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000054 | genome | Sc0000054:80753..85413 - |
Properties
Property Name | Value |
Transcript id | BL97211_cuf12 |
Biotype | protein_coding |
|