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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97197_cuf3 >transcript:BL97197_cuf3-protein ID=transcript:BL97197_cuf3-protein|Name=transcript:BL97197_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=289bp
ECDPGWEGHQCEHDKDECWYETHICHHNCENHDGCYTCSCDDGFQLINST HCVPSTTANTDSATATPPQTATRSNLLCVAATTSTTDRTTARTTRPTASG LQTSATTVHMKTTRRPLRTTPATVADGGANHHKADMAIGAGVTVALVLLF ISLGGFIRYKKKNTSSYQQEMLSYHPPHPRGSLPGYTDTHWRNPVYENLH EERPKMQTPPPPYCEAAEGFVTLPEMSKGGITHANVVSVGIGSMPVLGTI PESKELPPPCEAPISLDPRHVGDIAATQRFDCALNEFHR Run BLAST on NCBI mRNA from alignment at Sc0000066:1398479..1400836+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97197_cuf3 ID=transcript:BL97197_cuf3|Name=transcript:BL97197_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2358bp|location=Sequence derived from alignment at Sc0000066:1398479..1400836+ (Branchiostoma lanceolatum) CGAATGTGATCCCGGTTGGGAAGGCCATCAGTGTGAACATGGTAATATTT
CCTTCATGTTATTAGTTTAAATGAGTTGTCTCGGATTGCAGTAATGGTAA
GATGTTTTAGCAACGATGCCAACAAAAGTTTCCGGGTCCCCGCCAGATGG
TGGGTGTCTATTGTAAGAAGAAAACTTCCTCATTGACGTAACGTTTCTTA
CCATTTGAGGAAAAGTTTTGTTTAAAGCATAGGGCTTTCTTTTGAGAACA
AACTAAACCCTTTTATGCGGAAGTCTTCCTGAAGCCAACCTCTTTATTTC
CTAATACTTGTATAGGGTTTTCATGTCAATGTACCACACACTAACCTTAG
ATTTTTTTAAAGAAGATGTTTGCTTTATGGATTCAGCCGTTTGATGCCCG
AATATCCCCGAAGCAATGTTGCAGAGATACTACTCTATCAATGACCGACA
TGTAAAAACACATCTACAAATACTGTAATACTGTGCTCGGAAAAAGCATA
ACCCCCTTTCCAGAAAAAGTTATGCCTATTCAGCTTTGCTCAATCATGAC
AGAAAAATGGCTACACGGCTACTGATGACCATGTTACAGGTGATATTGTC
ATCAGTATACAACCAACCCAAACGCTAAAAAGTCTAATTTGACACCATCA
CAGACAAAGATGAGTGCTGGTACGAGACTCACATCTGTCACCACAACTGT
GAGAACCACGATGGCTGCTACACGTGTTCCTGTGACGACGGATTCCAGCT
CATCAACTCCACACACTGTGTTCCCTCTACCACTGCCAATACCGACAGTG
CAACGGCGACACCTCCACAGACGGCCACGAGGAGTAACTTACTCTGTGTC
GCTGCCACAACATCAACTACAGACAGGACAACAGCAAGAACCACCAGGCC
GACAGCTAGCGGTTTACAGACGAGCGCCACAACAGTCCACATGAAGACAA
CAAGACGACCGCTGAGGACCACCCCGGCTACCGGTATGCACTCATTTATC
GACCTGAAATTCCACAAACGAGAAGATCTGTTCGGAATTTACATTACATT
TCGGTGCATCTTTCACCCCCCCAAAAAAAAGACTATGAATGTGTGGTGAA
CCCCTCTGTTGAAACTCCGTTCTCGTCAAAAATTCTATTGTTAAAATTTC
CCCTATTAGTTACTTTGCGATAAAGATTGAGTCTCATGTTAACGTTTCGC
TACATTTGTAACGGAATAAATTTCCTTTCTTGTTTTAACGGCACGGGGTT
CGATCCATGTATCAAAAGTGCCAAGCCCATTGGAAAGTTATAAAACAACT
ATAGTTTTCCCTTAAATAAACTGAATAGTTACTGAGATGGCTAAATATCA
CGCGTATGCTGACATCTTCTGTGTATTACAGTTGCAGATGGAGGGGCAAA
CCACCACAAGGCCGACATGGCGATTGGGGCGGGAGTCACAGTGGCCCTGG
TACTCCTGTTCATCTCCCTCGGGGGTTTCATCCGGTACAAGAAGAAGAAT
ACATCATCCTACCAACAGGAGATGCTCTCGTACCATCCACCACACCCTCG
CGGTTCCCTGCCCGGCTACACAGACACGCACTGGAGAAATCCAGTCTACG
AAAACCTGCACGAAGAACGTCCCAAAATGCAAACCCCGCCGCCCCCGTAC
TGTGAAGCTGCTGAGGGCTTCGTCACTTTACCCGAAATGTCCAAGGGTGG
AATAACGCATGCGAATGTTGTAAGCGTTGGAATCGGCAGTATGCCGGTAC
TAGGTACCATCCCTGAGTCTAAAGAGTTGCCACCACCCTGTGAAGCCCCA
ATCTCACTGGACCCGCGGCACGTTGGCGACATCGCTGCGACCCAGCGATT
TGACTGTGCGCTCAACGAATTCCATCGATAAAAACGAATCATTTTATGCT
TTGTGTGTTTTGTTGCACGTGTAAGTTTGTATTATGTTCCCGTTATAAAG
CAAAAGGTAACACAAATCCAGCTTAAGAGGCAGTAACACCGCCAACATGC
CCATGGCCAGTGAGCTAGGGGCTTAACTTGATACACGTCGACGATAAAAA
AGAACCACTGGTGGAAGACTAGGGTTATGAACAAATGAAGAAGGTTCCTG
GCAATGAGTATGAGAGCTTGAAGCGCTGGTGAACTGTAAATAAGATTGTT
AGCTAATCGTCATATCCGCATCATAGCTTAAAGTGGTTGTGTGTATCGTA
GTCAGATATAGATATTCCCATAGAATAAACAGTCCATATCAATTAGGTGA
AATCTTACGTGACACGGCAGACGAAGAAACTGTATACTCATCATTTTTTA
AATGATTGTTTTGATGCACGAAGTGTGACTATATAACTGACACAATAAAG
ATCTGAAT Coding sequence (CDS) from alignment at Sc0000066:1398479..1400836+ >transcript:BL97197_cuf3 ID=transcript:BL97197_cuf3|Name=transcript:BL97197_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2610bp|location=Sequence derived from alignment at Sc0000066:1398479..1400836+ (Branchiostoma lanceolatum) GAATGTGATCCCGGTTGGGAAGGCCATCAGTGTGAACATGACAAAGATGA GTGCTGGTACGAGACTCACATCTGTCACCACAACTGTGAGAACCACGATG GCTGCTACACGTGTTCCTGTGACGACGGATTCCAGCTCATCAACTCCACA CACTGTGTTCCCTCTACCACTGCCAATACCGACAGTGCAACGGCGACACC TCCACAGACGGCCACGAGGAGTAACTTACTCTGTGTCGCTGCCACAACAT CAACTACAGACAGGACAACAGCAAGAACCACCAGGCCGACAGCTAGCGGT TTACAGACGAGCGCCACAACAGTCCACATGAAGACAACAAGACGACCGCT GAGGACCACCCCGGCTACCGTTGCAGATGGAGGGGCAAACCACCACAAGG CCGACATGGCGATTGGGGCGGGAGTCACAGTGGCCCTGGTACTCCTGTTC ATCTCCCTCGGGGGTTTCATCCGGTACAAGAAGAAGAATACATCATCCTA CCAACAGGAGATGCTCTCGTACCATCCACCACACCCTCGCGGTTCCCTGC CCGGCTACACAGACACGCACTGGAGAAATCCAGTCTACGAAAACCTGCAC GAAGAACGTCCCAAAATGCAAACCCCGCCGCCCCCGTACTGTGAAGCTGC TGAGGGCTTCGTCACTTTACCCGAAATGTCCAAGGGTGGAATAACGCATG CGAATGTTGTAAGCGTTGGAATCGGCAGTATGCCGGTACTAGGTACCATC CCTGAGTCTAAAGAGTTGCCACCACCCTGTGAAGCCCCAATCTCACTGGA CCCGCGGCACGTTGGCGACATCGCTGCGACCCAGCGATTTGACTGTGCGC TCAACGAATTCCATCGATAAGAATGTGATCCCGGTTGGGAAGGCCATCAG TGTGAACATGACAAAGATGAGTGCTGGTACGAGACTCACATCTGTCACCA CAACTGTGAGAACCACGATGGCTGCTACACGTGTTCCTGTGACGACGGAT TCCAGCTCATCAACTCCACACACTGTGTTCCCTCTACCACTGCCAATACC GACAGTGCAACGGCGACACCTCCACAGACGGCCACGAGGAGTAACTTACT CTGTGTCGCTGCCACAACATCAACTACAGACAGGACAACAGCAAGAACCA CCAGGCCGACAGCTAGCGGTTTACAGACGAGCGCCACAACAGTCCACATG AAGACAACAAGACGACCGCTGAGGACCACCCCGGCTACCGTTGCAGATGG AGGGGCAAACCACCACAAGGCCGACATGGCGATTGGGGCGGGAGTCACAG TGGCCCTGGTACTCCTGTTCATCTCCCTCGGGGGTTTCATCCGGTACAAG AAGAAGAATACATCATCCTACCAACAGGAGATGCTCTCGTACCATCCACC ACACCCTCGCGGTTCCCTGCCCGGCTACACAGACACGCACTGGAGAAATC CAGTCTACGAAAACCTGCACGAAGAACGTCCCAAAATGCAAACCCCGCCG CCCCCGTACTGTGAAGCTGCTGAGGGCTTCGTCACTTTACCCGAAATGTC CAAGGGTGGAATAACGCATGCGAATGTTGTAAGCGTTGGAATCGGCAGTA TGCCGGTACTAGGTACCATCCCTGAGTCTAAAGAGTTGCCACCACCCTGT GAAGCCCCAATCTCACTGGACCCGCGGCACGTTGGCGACATCGCTGCGAC CCAGCGATTTGACTGTGCGCTCAACGAATTCCATCGATAAGAATGTGATC CCGGTTGGGAAGGCCATCAGTGTGAACATGACAAAGATGAGTGCTGGTAC GAGACTCACATCTGTCACCACAACTGTGAGAACCACGATGGCTGCTACAC GTGTTCCTGTGACGACGGATTCCAGCTCATCAACTCCACACACTGTGTTC CCTCTACCACTGCCAATACCGACAGTGCAACGGCGACACCTCCACAGACG GCCACGAGGAGTAACTTACTCTGTGTCGCTGCCACAACATCAACTACAGA CAGGACAACAGCAAGAACCACCAGGCCGACAGCTAGCGGTTTACAGACGA GCGCCACAACAGTCCACATGAAGACAACAAGACGACCGCTGAGGACCACC CCGGCTACCGTTGCAGATGGAGGGGCAAACCACCACAAGGCCGACATGGC GATTGGGGCGGGAGTCACAGTGGCCCTGGTACTCCTGTTCATCTCCCTCG GGGGTTTCATCCGGTACAAGAAGAAGAATACATCATCCTACCAACAGGAG ATGCTCTCGTACCATCCACCACACCCTCGCGGTTCCCTGCCCGGCTACAC AGACACGCACTGGAGAAATCCAGTCTACGAAAACCTGCACGAAGAACGTC CCAAAATGCAAACCCCGCCGCCCCCGTACTGTGAAGCTGCTGAGGGCTTC GTCACTTTACCCGAAATGTCCAAGGGTGGAATAACGCATGCGAATGTTGT AAGCGTTGGAATCGGCAGTATGCCGGTACTAGGTACCATCCCTGAGTCTA AAGAGTTGCCACCACCCTGTGAAGCCCCAATCTCACTGGACCCGCGGCAC GTTGGCGACATCGCTGCGACCCAGCGATTTGACTGTGCGCTCAACGAATT CCATCGATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000066 | genome | Sc0000066:1398479..1400836 + |
Properties
Property Name | Value |
Transcript id | BL97197_cuf3 |
Biotype | protein_coding |
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