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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97034_cuf3 >transcript:BL97034_cuf3-protein ID=transcript:BL97034_cuf3-protein|Name=transcript:BL97034_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=193bp
TVNVEQYALLGRALPTCEQLEDCNLDCEYGPKFDENQCPICECGDNPCKE
TSCGEYEVCALQPIQCLRPPCSPLPYCKPVPFSTNAERQIIHWLDLEPAS
KGPDSVDQLERFLQMLEERNATILHAMKIPSSSFMAIVQVDSASTVDVVT
ALDQAQDGLMASVRSTLVVPYENYWQEVFGFRDQPLEEDHEEL Run BLAST on NCBI mRNA from alignment at Sc0000024:2641496..2645036- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97034_cuf3 ID=transcript:BL97034_cuf3|Name=transcript:BL97034_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3541bp|location=Sequence derived from alignment at Sc0000024:2641496..2645036- (Branchiostoma lanceolatum)
TAACAGTCAACGTCGAGCAGTATGCCTTATTAGGTAAACGTCCTGATGAG
TGACAATGTGATAATCTGGCGGTATATAAGCTGGTTGATGGTTTGAAGTG
CGCATGTGCAGTGTGAGGCATTTCAGGAAATATGTCAAGAAGGCCACTGG
CAATACATGAAGAACTGGAAATACGCACTTCAAATCATGAACTAGTCTAT
TTAGGTAGGTCTCAACCATGAAGCCCATCAGGAATAGAGCGTTACTCCGC
TATTCGAAACTACATTTACATTTTACTGGTCGGCACAGCAAAGTGACGTT
GCCACCTACGACACGAAGACATGATTCGTCCCGTGAATGGTGTTTGAAAA
ATCCATATCATCAAGTTCTGTAAAAAAAAATAAGTCTAGATTACCGCCCT
GGCATAGAAATTCGAATATACAAATCGAATCAAAACTGCACTGGAACCTA
GCGATTCAGCCCAGCCGGTTGTATTAAAGCCGCTGACTGTGAAGGGAGAT
TAGCCCGACCGACTTAGTGCTGTCCTGCCATGTAGTAACCCACATTCCAG
CTGCTAAGCTAAGGACTGGGGCTTACGCATAGAAAACAGTTACTGCCTGT
AGCGTCAACGTTCTGATTTCCTTCTGCCGTAGGACGAGCCTTGCCGACCT
GCGAGCAGCTGGAGGACTGTAATCTGGACTGCGAGTACGGCCCGAAGTTT
GACGAGAACCAGTGTCCGATCTGCGAGTGCGGCGACAACCCCTGCAAGGT
ACGGGTCATGTCTTCAACTCGCACCACATATTCACCCGGTTTCCGAAACA
TGACACAAGTTTTCAGAATATCTACTCATGTATCCTCTCATACCTGACCT
GCTGTGTGTACATGCCAAGTAACGTCCCTGGCGCACCGACCGGTTATCCT
CCCTTCTCGCTGCGTTATCGCTGGCAAGCCGTCAGCAAATTAGACGCTCT
CCTCCCCTTGATAGAAGGAAAGTTACCTGCCAATCATGTTGCTTCTTGAC
TGTAGTTGACGAGGTGTTTGGTTGGTGACGGCTGGCCAACGTTGACGCAG
TGGGATGGACCGATCGCAGGGTCGTTGCTTGATGATTACAAGCGAGGGGT
CCGGCATGAGAGGACACGCCCCTGAGGCGTATAGGATATCTGTCCATTTT
AACCTCGTGTGCGTTTGGTTTTGTCACCAGGAGACGAGTTGCGGGGAGTA
CGAGGTGTGCGCCCTCCAGCCCATCCAGTGCCTCCGGCCGCCATGCTCCC
CTCTGCCGTACTGCAAGCCTGTCCCGTTCAGCACGAGTAAGCCACCCTTA
AGACTGACATGACATAACCCTTAAGCTTATATTATAATAAAAGAAGTAAA
CGAGACTTATCCTCGCCAAAACAACACACGTAAACAGGTGATACAAAATA
TGTAGTTAACCTGGCACATATTTAGTGTAAACGTTGACGAGAAACTAGAA
GCGACGGCTACCGACGAAAACATCAACCACCGCTCGGGGTGGAGAGTATC
ATAACAGTCACCTTCAAACTGTGCGTGCGCATCGAGGCGTATTGTGTGTT
GATAGGTCAAAGGTAGACGCCCCTGAGACATTGATAAAACACGTCTGGCC
ATGTTTTAAGCAGGGTCTAGGCAAGAATTTTTCACAGGTTAGGGGCATTC
ACATTTGACATGTTGCCCACAATCTATCCCGCTGTCCATGCGCTGTTTAA
TCTGTGAAGCGGCTTATTCAGTTCCTTTTGTCTTTCGACTCTCCAGACGC
CGAAAGGCAGATTATCCACTGGCTGGACCTGGAGCCGGCCAGTAAGGGGC
CGGACTCGGTGGACCAATTGGAGCGGTTCTTACAAATGCTGGAGGAGAGA
AACGCCACGATCCTACACGCGATGAAGGTGGGGTGCTTGTGTTACTGCCT
GTGATTCGCTGACGTGTTTGATTCTATTTCGGACATTTGTTCCTCAATAT
AAGCTTGTTCAATTTTTGAAGTGCAAATACGCAGTGTGATTATTGTGAGA
AATAGGTCAAACTTGAAGGCCCTTGGGTATTCTTCGTGTATCGTGAGAGG
CCTTCAACTTTGACATATTACCCACAGTGCACCACGTTGCACATGCGCAC
TCAAAATGATAATGACCTACACTTTTGTTGTTTCAGATCCCTTCGTCGTC
ATTCATGGCAAGTACGTATTTGTTTTCAAACTGTGATTTGAATGATTACA
GACTTGAGATTGGATAGAAGATTGTTTTTATTGTGGCATCGTTGTGCCAG
TAACTCTGGGGTTAAATCATCGTAACCATATCCACGAAATTCAGCGTTTC
GGTTAGACAGTGCGTCTGCCAAGTACTAGCATCATCCTCGCATGCCAGAC
ACCGGCGTAGCGGCTTGCGATCCGTCCTTCTCCCTGCGTTAGCATCAGCC
GTCAACCAATCAGATACTCCCCCTCCTGTTGTAAGAACGTTACACGCCAA
TCACGTCACCTCTTGGCCATTGACAGCAGCGTGATTGGCTGGCAACTTTC
CCTCCAACAAGGATGTATCGCAGCGAGAATGGCGGGTCGCTGGCCGGTAC
GCCATGGTCGCTGCCTGAGATACACAAGCGGTGGGTGCGGCATGGGACGA
TAACTGGTACATCTGCTATTTGCAAGTCACACCCCATACCAGACTGACTC
ATTTTAGGGACTTTGGGGCCTATTGTCAGACCAGAAACGGGTCAAAAGCG
ACGTACCCGTTCCACGTTCGAGCTGAGATTCGGCCTGTTCCATCTGCCGT
TGGCCATCAAACACGTGTTCCTTTCGGGTTACCTGAGGTCACATTGCAGG
AACACGCGCGCAAAACGTCCATTATTGCATGGGGAGGGAGTGGAATATGC
TGCATTTTCTCGGGAGCAAATGTCGGCCTGTCTAGTTAAACACGTACCTT
TCACGTCCTTTCACAGTTGTGCAGGTGGACTCGGCCTCCACAGTGGACGT
GGTGACGGCGCTGGACCAGGCGCAGGACGGGCTGATGGCGTCGGTCCGCA
GCACGCTCGTCGTGCCGTACGAGAACTACTGGCAGGAGGTCTTCGGCTTC
AGGTACGTGTGTGGAGGGACATTTTACGTATGTGGAGGAACAGATTCACC
ATTCTATATGTACAGAAATCTGAACAAAACCACCTGGCCCTGCCGGTCGA
CACATATCTGAAGCCCAGCCTGCGCCAAATGCGGCATAAACATCCAAACT
CATTCAAAGCAATTCCCTTCCACAGAGACTGTCTTAGATTGGAACTCTTT
ACCATATTCAACCACTCAAGTATCAGATCCAGTGAAGCTCAGGGAGGAGG
TCTCTAAAAAAACACCGGAGGAATCGACAATATTTTTGTACTTATTTATT
AAAATTGCAACAAGGCAATAGAGCCCAGGAAGCAATGCTGATATTGGGTG
ACATCTGAAATACATCAGTTTAACAATCACCTATGGCTTGAATATACGCT
CGGATGTTGATTGATTGGTTGATTGATTGATTGATTGATTGGTTGACTGA
TTGCAGGGACCAGCCTCTTGAGGAGGACCACGAGGAGCTCA Coding sequence (CDS) from alignment at Sc0000024:2641496..2645036- >transcript:BL97034_cuf3 ID=transcript:BL97034_cuf3|Name=transcript:BL97034_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=4053bp|location=Sequence derived from alignment at Sc0000024:2641496..2645036- (Branchiostoma lanceolatum)
ACAGTCAACGTCGAGCAGTATGCCTTATTAGGACGAGCCTTGCCGACCTG
CGAGCAGCTGGAGGACTGTAATCTGGACTGCGAGTACGGCCCGAAGTTTG
ACGAGAACCAGTGTCCGATCTGCGAGTGCGGCGACAACCCCTGCAAGGAG
ACGAGTTGCGGGGAGTACGAGGTGTGCGCCCTCCAGCCCATCCAGTGCCT
CCGGCCGCCATGCTCCCCTCTGCCGTACTGCAAGCCTGTCCCGTTCAGCA
CGAACGCCGAAAGGCAGATTATCCACTGGCTGGACCTGGAGCCGGCCAGT
AAGGGGCCGGACTCGGTGGACCAATTGGAGCGGTTCTTACAAATGCTGGA
GGAGAGAAACGCCACGATCCTACACGCGATGAAGATCCCTTCGTCGTCAT
TCATGGCAATTGTGCAGGTGGACTCGGCCTCCACAGTGGACGTGGTGACG
GCGCTGGACCAGGCGCAGGACGGGCTGATGGCGTCGGTCCGCAGCACGCT
CGTCGTGCCGTACGAGAACTACTGGCAGGAGGTCTTCGGCTTCAGGGACC
AGCCTCTTGAGGAGGACCACGAGGAGCTCACAGTCAACGTCGAGCAGTAT
GCCTTATTAGGACGAGCCTTGCCGACCTGCGAGCAGCTGGAGGACTGTAA
TCTGGACTGCGAGTACGGCCCGAAGTTTGACGAGAACCAGTGTCCGATCT
GCGAGTGCGGCGACAACCCCTGCAAGGAGACGAGTTGCGGGGAGTACGAG
GTGTGCGCCCTCCAGCCCATCCAGTGCCTCCGGCCGCCATGCTCCCCTCT
GCCGTACTGCAAGCCTGTCCCGTTCAGCACGAACGCCGAAAGGCAGATTA
TCCACTGGCTGGACCTGGAGCCGGCCAGTAAGGGGCCGGACTCGGTGGAC
CAATTGGAGCGGTTCTTACAAATGCTGGAGGAGAGAAACGCCACGATCCT
ACACGCGATGAAGATCCCTTCGTCGTCATTCATGGCAATTGTGCAGGTGG
ACTCGGCCTCCACAGTGGACGTGGTGACGGCGCTGGACCAGGCGCAGGAC
GGGCTGATGGCGTCGGTCCGCAGCACGCTCGTCGTGCCGTACGAGAACTA
CTGGCAGGAGGTCTTCGGCTTCAGGGACCAGCCTCTTGAGGAGGACCACG
AGGAGCTCACAGTCAACGTCGAGCAGTATGCCTTATTAGGACGAGCCTTG
CCGACCTGCGAGCAGCTGGAGGACTGTAATCTGGACTGCGAGTACGGCCC
GAAGTTTGACGAGAACCAGTGTCCGATCTGCGAGTGCGGCGACAACCCCT
GCAAGGAGACGAGTTGCGGGGAGTACGAGGTGTGCGCCCTCCAGCCCATC
CAGTGCCTCCGGCCGCCATGCTCCCCTCTGCCGTACTGCAAGCCTGTCCC
GTTCAGCACGAACGCCGAAAGGCAGATTATCCACTGGCTGGACCTGGAGC
CGGCCAGTAAGGGGCCGGACTCGGTGGACCAATTGGAGCGGTTCTTACAA
ATGCTGGAGGAGAGAAACGCCACGATCCTACACGCGATGAAGATCCCTTC
GTCGTCATTCATGGCAATTGTGCAGGTGGACTCGGCCTCCACAGTGGACG
TGGTGACGGCGCTGGACCAGGCGCAGGACGGGCTGATGGCGTCGGTCCGC
AGCACGCTCGTCGTGCCGTACGAGAACTACTGGCAGGAGGTCTTCGGCTT
CAGGGACCAGCCTCTTGAGGAGGACCACGAGGAGCTCACAGTCAACGTCG
AGCAGTATGCCTTATTAGGACGAGCCTTGCCGACCTGCGAGCAGCTGGAG
GACTGTAATCTGGACTGCGAGTACGGCCCGAAGTTTGACGAGAACCAGTG
TCCGATCTGCGAGTGCGGCGACAACCCCTGCAAGGAGACGAGTTGCGGGG
AGTACGAGGTGTGCGCCCTCCAGCCCATCCAGTGCCTCCGGCCGCCATGC
TCCCCTCTGCCGTACTGCAAGCCTGTCCCGTTCAGCACGAACGCCGAAAG
GCAGATTATCCACTGGCTGGACCTGGAGCCGGCCAGTAAGGGGCCGGACT
CGGTGGACCAATTGGAGCGGTTCTTACAAATGCTGGAGGAGAGAAACGCC
ACGATCCTACACGCGATGAAGATCCCTTCGTCGTCATTCATGGCAATTGT
GCAGGTGGACTCGGCCTCCACAGTGGACGTGGTGACGGCGCTGGACCAGG
CGCAGGACGGGCTGATGGCGTCGGTCCGCAGCACGCTCGTCGTGCCGTAC
GAGAACTACTGGCAGGAGGTCTTCGGCTTCAGGGACCAGCCTCTTGAGGA
GGACCACGAGGAGCTCACAGTCAACGTCGAGCAGTATGCCTTATTAGGAC
GAGCCTTGCCGACCTGCGAGCAGCTGGAGGACTGTAATCTGGACTGCGAG
TACGGCCCGAAGTTTGACGAGAACCAGTGTCCGATCTGCGAGTGCGGCGA
CAACCCCTGCAAGGAGACGAGTTGCGGGGAGTACGAGGTGTGCGCCCTCC
AGCCCATCCAGTGCCTCCGGCCGCCATGCTCCCCTCTGCCGTACTGCAAG
CCTGTCCCGTTCAGCACGAACGCCGAAAGGCAGATTATCCACTGGCTGGA
CCTGGAGCCGGCCAGTAAGGGGCCGGACTCGGTGGACCAATTGGAGCGGT
TCTTACAAATGCTGGAGGAGAGAAACGCCACGATCCTACACGCGATGAAG
ATCCCTTCGTCGTCATTCATGGCAATTGTGCAGGTGGACTCGGCCTCCAC
AGTGGACGTGGTGACGGCGCTGGACCAGGCGCAGGACGGGCTGATGGCGT
CGGTCCGCAGCACGCTCGTCGTGCCGTACGAGAACTACTGGCAGGAGGTC
TTCGGCTTCAGGGACCAGCCTCTTGAGGAGGACCACGAGGAGCTCACAGT
CAACGTCGAGCAGTATGCCTTATTAGGACGAGCCTTGCCGACCTGCGAGC
AGCTGGAGGACTGTAATCTGGACTGCGAGTACGGCCCGAAGTTTGACGAG
AACCAGTGTCCGATCTGCGAGTGCGGCGACAACCCCTGCAAGGAGACGAG
TTGCGGGGAGTACGAGGTGTGCGCCCTCCAGCCCATCCAGTGCCTCCGGC
CGCCATGCTCCCCTCTGCCGTACTGCAAGCCTGTCCCGTTCAGCACGAAC
GCCGAAAGGCAGATTATCCACTGGCTGGACCTGGAGCCGGCCAGTAAGGG
GCCGGACTCGGTGGACCAATTGGAGCGGTTCTTACAAATGCTGGAGGAGA
GAAACGCCACGATCCTACACGCGATGAAGATCCCTTCGTCGTCATTCATG
GCAATTGTGCAGGTGGACTCGGCCTCCACAGTGGACGTGGTGACGGCGCT
GGACCAGGCGCAGGACGGGCTGATGGCGTCGGTCCGCAGCACGCTCGTCG
TGCCGTACGAGAACTACTGGCAGGAGGTCTTCGGCTTCAGGGACCAGCCT
CTTGAGGAGGACCACGAGGAGCTCACAGTCAACGTCGAGCAGTATGCCTT
ATTAGGACGAGCCTTGCCGACCTGCGAGCAGCTGGAGGACTGTAATCTGG
ACTGCGAGTACGGCCCGAAGTTTGACGAGAACCAGTGTCCGATCTGCGAG
TGCGGCGACAACCCCTGCAAGGAGACGAGTTGCGGGGAGTACGAGGTGTG
CGCCCTCCAGCCCATCCAGTGCCTCCGGCCGCCATGCTCCCCTCTGCCGT
ACTGCAAGCCTGTCCCGTTCAGCACGAACGCCGAAAGGCAGATTATCCAC
TGGCTGGACCTGGAGCCGGCCAGTAAGGGGCCGGACTCGGTGGACCAATT
GGAGCGGTTCTTACAAATGCTGGAGGAGAGAAACGCCACGATCCTACACG
CGATGAAGATCCCTTCGTCGTCATTCATGGCAATTGTGCAGGTGGACTCG
GCCTCCACAGTGGACGTGGTGACGGCGCTGGACCAGGCGCAGGACGGGCT
GATGGCGTCGGTCCGCAGCACGCTCGTCGTGCCGTACGAGAACTACTGGC
AGGAGGTCTTCGGCTTCAGGGACCAGCCTCTTGAGGAGGACCACGAGGAG
CTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000024 | genome | Sc0000024:2641496..2645036 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97034_cuf3 |
| Biotype | protein_coding |
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