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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97026_cuf0 >transcript:BL97026_cuf0-protein ID=transcript:BL97026_cuf0-protein|Name=transcript:BL97026_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=275bp
MKAKGLLLDVALVVLIVRGCWAAQASPTLGEPQCFSAWTVAGQPPLFNDT
WGGLEMVAFPAETSVSERGGVVRGFADLQDGQHLVTVDDIVAVAKLTERL
VELNKTPNPNDQDFAAAVVGKLVGLLRDKMDDGMTSEQLSLAASAVVDAV
AVLMKERPPGESRANLLEHQVDSTNLAQRQETRHLANVQTRPTNGEIRDI
ERGILGDVLKDVDDLSHSLLWGKAEMGYMEVGTKGVRIVVGKSSGADIGG
AGVSVNKDRVTLPSAAALFGDGVPD Run BLAST on NCBI mRNA from alignment at Sc0000077:891811..896147+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97026_cuf0 ID=transcript:BL97026_cuf0|Name=transcript:BL97026_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4337bp|location=Sequence derived from alignment at Sc0000077:891811..896147+ (Branchiostoma lanceolatum)
CGAATATATGAACACGTTTAAATGAAACGTTTTGCTCAATTTGAGTTCAC
GTTACGGGTCGATGACCTGGAAAAAGAAAACGCCCAGACTTCATTACAGG
AAATAATACTGTAGGTCAGTGGCGGATGCATATGAAATTCATGTCGCATT
CCGATTCAGTACATCCACTTATAGTTTGATTTTTATTCCCGAACCATTCC
TCAATATTCCATCCTTATTTGTTGCATTTTCATCATCTTGCGAATGCTGA
CAACTTGATTAAGCCCCCGATCTGTTATCTATTCTACAACATAAATACCT
TCGCATACATACCATCCTTTCATACCACAGATGTCACAAGTAAATTAAAG
GCCGGTGACTGATCGTTCTGCTTGGTCACAACAATAGGTGTTTTGGATAT
GTATCCATAATCAAAATAACGTTGTCATCCAAGTGGAAAGGAAGAATACT
TGGGGCAATTATGACATAAAATATTCAAGACACCTGTTTAGTGAAGTGCA
ATGCTGTATTGTCCCTTCGAGGTTAAAGTACACTTTAATGAGGAGCAACA
CGTATTGGCACATATACAAGCGATTTATTGGTACATGTACTATGTATTTT
AGGGCGATTCCATGTAATTCACAGGGTCCCTGACAAGATTAGAATAACGT
CAACATACACCGGTCATCATTGAACATATGCTTTGGGTGCTGCTAGATCA
GCGCTACAAATACAATTCAACCGCTGCTAGTATTTCTACCTCTGGGATTC
GTTTTCAAGAATTTGGTTATACCAAAATCCTTGGATGGTATCGTCCAGCT
GGACGACTGAAGAAGCAATTTTATCCGGTCACATTTATGAGACGTTAGAA
CAGGTGGGCGCACCTGTAGCATGTGTTGTTGTAACTTTCTCTCCATCGGC
GGTTCATTGAGTAACAAAAGTTTGCAGCGGAAATTTGTGATGTGACTGCT
TCTAGCAAAGACCCATCCACGGCAATGAAAGCTAAGGGGCTCCTGCTCGA
CGTTGCCCTGGTGGTTCTTATAGTCAGAGGATGTTGGGCCGCCCAAGCGT
CGCCGACTCTTGGTAAAGTTTTTGTCCTTTTTTCTCGTCAGCTAGATCTG
TTACATTTTTGTTAAGACGTCTGTGCCCGATGTGATGACCAGATACATCT
GACATGTTTTGCCAGTAGCTTTAGGAGTAGTTTAATTTTGATTAAGATTT
CGCAAGGCAACACTCTAACATAGATGAGGCATTGAAGAAAGCCAGGCTCT
CCATTTAAGATACATAAACGTGTACACAAGTTAGCATTCTTCCTTTTATA
ATTAAAGTGTTTTTGGTGGAGGAGGAGTCACGTAACCGATGGAAAATGCA
GCATTGACACCAGAAATATGTAAAATTGCAACGGCCGTAGTTGGTGTTGT
ACTTAAATATCCCCTTCCTGTTTCTCAGGCGAACCCCAGTGTTTCAGCGC
CTGGACGGTAGCCGGCCAGCCTCCGCTCTTCAACGACACATGGGGAGGCT
TGGGTAAGTTTCAGTCGTCCATACTGCTAAGGCCCCCATCCCACTAGACG
GCGATCGCGCTGCGCTCTCGATGAGATCGGATGTGTGTAACCCTTGATTA
CACAATTGGAATATCATGCAAAATGTAAAAGTATGACTGAAAAGACAACA
AAACACACAAAGAGTAAAAAGATTCGTTTTGTATCTATGAAATTTGCCGA
GCACTCTGTTCAATTTCAGTTCGCAGAGAGAGCGCCATCCTAGTGGAATG
GGGGTACAAAACAAAACTGTGATAAATACTTGTTTTCTAGTATGCATTTA
CCACAGCTACGTCTGTCTTATAGAATCTTACCTGTCCACCGACAAATGTG
TAAATTTGAATCCAGACATTTAATACAGACTTTTTAGCCATATTCCACAC
GTTTGGTAACGTTACATGACATGATCAAAATTGTATGTAGAAAGCGTTCG
AAGGGATTTGTCAGTCAGCATTCCATGATCATAAACATGATCGACTGGCA
TGTTCCATTGCTCGTAAAGTTGTTTCCGCCTGCACATGCATGTGTCTTTT
CTGTGTAGCAGACTGTGTAACTGTTTTTGTCAACCCTTAACACTTACATG
TAACGTTGCATTGCATGTGCCATACGACACCATACCCGTACCCGCAACAA
ACATCGTCACTAAAGAAATGTGTATAGTCACAGCATTTGTGCTAGAGGAA
ACCTACTGTAATTCTTGTCTCTTCTAGTTAAAACATACAGTCAAACGAAT
GTTGTGCTGAAATGAATGCATATATATAGTTTGCAAAAGATTAGGTACTT
TCCGTTAAAAAAAGTCCATACCATCAGCGGAAACGCTGATGTTTGAAAAT
AATAATAATATCCAGGATTTGATAAAAAGGTACCGGTATCGAATGAATCT
TTCTCATTTGGTTATTCAGCAAAGAAACATCATAAATGTCCTGAGATGCC
ATCATCTGAGAGACGACACAAAAGCAAAGCCTTGTGCACGTACACAACAA
GTCAGATTGGGTGCGGTTGAAGGACATGTATTTAAGGCCGTGCCTTTGTG
TCGCAGCTACGGTGATCTTATCTCAAAGCACTTATGAAGATTAAATCCCA
TTGTTGCTCAAGCACCCGTGTAATATTTTCTGTCACACACGAATATTAAA
TGTGTTTGATGTGAGGGATTGGGTCCGTCTCAAGACTAACGTATGGTATT
GCGCTTGATATAACTAAACTTTCAAGTACAAGACATTAAAAAAAAAAGAA
TCGCAATTTGATTCTCACTAGCCCAACCAAAGCAGAAAGATAGCTAAGAG
TTTGTGCTTAAAATTCGAGCAAACCTTTGTAAAATTATTACAGAGATGGT
GGCATTTCCGGCGGAAACATCCGTCTCAGAGCGAGGTGGAGTAGTGCGTG
GATTTGCAGATCTTCAGGACGGGCAGCATCTAGTAACTGTGGATGACATC
GTTGCAGTAGCGAAGCTAACTGAACGTCTCGTGGAGTTGAACAAAACACC
CAACCCAAATGATCAGGTAATAAAATATTCATTCAACAATCAAAGGCTAA
CGGTAGTCTTTCCATGTATCGTATCTTAATCATAACCTAGGAATTACTCT
TTGTACTCATTATTTTGGTACATACATACATACGTTCTCTTTTTTACATT
TGTCCTTTAGATGTCAAGGTTTCGCAGCTGCAGATTCTGTAAATATGGCT
GTTTTTTTACATTAATTAATTCGCTTGAATGAAATGCGTTATCATGTCTT
CCTGCCACTTCTAACCACAGGACTTTGCAGCAGCGGTTGTGGGAAAGCTA
GTTGGCTTATTGAGGGACAAGATGGACGATGGGATGACTTCGGAGCAGCT
TTCACTCGCTGCATCTGGTAAGACGATCCCTTTTTGAAGTTTGAATGCAG
TTTGTTACTTGGACCTAGATGTCCATTAAATTTCCTAATGCAAGTGGACA
ATCCTTCCATCGAGAAACTTATCCATTCTTTTATATCTACTATAAATGAC
AAGCGAGGAGACGTTGAATCTATCTAATGATAGTTTTATTTTGTATCTGT
TAACTGTATCTGTTCAACAAGTTTTGATTTGTTGTGACCTGTACTTAGCC
CAGCGCGGCAAAAAAAGGGAAAGAAATGTCTTCATTCATTCATTGAATTG
GGGTCAAGTAAGTTTCACAAAACTTAACATTACTCCTTGCAGCTGTTGTC
GACGCTGTAGCCGTGTTGATGAAAGAGAGACCACCCGGAGAGAGTCGTGC
TAACTTGCTCGAGCACCAGGTCGACAGTACGAATCTGGCTCAACGACAGG
AGACCCGGCACCTGGCGAATGTACAGACGAGGCCGACCAACGGAGAAATC
CGGGACATTGTAAGTTTGTCCAGTGATAGTTAACTCAGAAAACAGCAGTG
CAGATTTCTTGGCAGACCAGTTCCTTTATAGTTAAAACACGATAAAACCG
AGGAGGTTTATGAAACCATGTGCACAGGGTGATGCCAAACGTTCCCCGTT
ACAAATACTGGAAACCATATGTGCATAATGCAGCTTTTCGATGATTACCT
GTATCTTTCCCCATCTTTACGACATGCGTGACATTTGCCACTGTCATTAT
TTTTCTCCAGGAAAGGGGCATACTTGGAGATGTCCTGAAGGACGTTGACG
ACCTTTCTCATTCGCTTCTGTGGGGCAAAGCTGAGATGGGCTACATGGAG
GTGGGGACCAAGGGGGTGCGGATTGTGGTGGGGAAGTCATCGGGGGCAGA
CATAGGTGGGGCCGGCGTGAGTGTGAACAAGGACAGGGTGACGTTACCGT
CAGCTGCTGCATTGTTCGGCGACGGTGTTCCGGACAT Coding sequence (CDS) from alignment at Sc0000077:891811..896147+ >transcript:BL97026_cuf0 ID=transcript:BL97026_cuf0|Name=transcript:BL97026_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=4950bp|location=Sequence derived from alignment at Sc0000077:891811..896147+ (Branchiostoma lanceolatum)
ATGAAAGCTAAGGGGCTCCTGCTCGACGTTGCCCTGGTGGTTCTTATAGT
CAGAGGATGTTGGGCCGCCCAAGCGTCGCCGACTCTTGGCGAACCCCAGT
GTTTCAGCGCCTGGACGGTAGCCGGCCAGCCTCCGCTCTTCAACGACACA
TGGGGAGGCTTGGAGATGGTGGCATTTCCGGCGGAAACATCCGTCTCAGA
GCGAGGTGGAGTAGTGCGTGGATTTGCAGATCTTCAGGACGGGCAGCATC
TAGTAACTGTGGATGACATCGTTGCAGTAGCGAAGCTAACTGAACGTCTC
GTGGAGTTGAACAAAACACCCAACCCAAATGATCAGGACTTTGCAGCAGC
GGTTGTGGGAAAGCTAGTTGGCTTATTGAGGGACAAGATGGACGATGGGA
TGACTTCGGAGCAGCTTTCACTCGCTGCATCTGCTGTTGTCGACGCTGTA
GCCGTGTTGATGAAAGAGAGACCACCCGGAGAGAGTCGTGCTAACTTGCT
CGAGCACCAGGTCGACAGTACGAATCTGGCTCAACGACAGGAGACCCGGC
ACCTGGCGAATGTACAGACGAGGCCGACCAACGGAGAAATCCGGGACATT
GAAAGGGGCATACTTGGAGATGTCCTGAAGGACGTTGACGACCTTTCTCA
TTCGCTTCTGTGGGGCAAAGCTGAGATGGGCTACATGGAGGTGGGGACCA
AGGGGGTGCGGATTGTGGTGGGGAAGTCATCGGGGGCAGACATAGGTGGG
GCCGGCGTGAGTGTGAACAAGGACAGGGTGACGTTACCGTCAGCTGCTGC
ATTGTTCGGCGACGGTGTTCCGGACATGAAAGCTAAGGGGCTCCTGCTCG
ACGTTGCCCTGGTGGTTCTTATAGTCAGAGGATGTTGGGCCGCCCAAGCG
TCGCCGACTCTTGGCGAACCCCAGTGTTTCAGCGCCTGGACGGTAGCCGG
CCAGCCTCCGCTCTTCAACGACACATGGGGAGGCTTGGAGATGGTGGCAT
TTCCGGCGGAAACATCCGTCTCAGAGCGAGGTGGAGTAGTGCGTGGATTT
GCAGATCTTCAGGACGGGCAGCATCTAGTAACTGTGGATGACATCGTTGC
AGTAGCGAAGCTAACTGAACGTCTCGTGGAGTTGAACAAAACACCCAACC
CAAATGATCAGGACTTTGCAGCAGCGGTTGTGGGAAAGCTAGTTGGCTTA
TTGAGGGACAAGATGGACGATGGGATGACTTCGGAGCAGCTTTCACTCGC
TGCATCTGCTGTTGTCGACGCTGTAGCCGTGTTGATGAAAGAGAGACCAC
CCGGAGAGAGTCGTGCTAACTTGCTCGAGCACCAGGTCGACAGTACGAAT
CTGGCTCAACGACAGGAGACCCGGCACCTGGCGAATGTACAGACGAGGCC
GACCAACGGAGAAATCCGGGACATTGAAAGGGGCATACTTGGAGATGTCC
TGAAGGACGTTGACGACCTTTCTCATTCGCTTCTGTGGGGCAAAGCTGAG
ATGGGCTACATGGAGGTGGGGACCAAGGGGGTGCGGATTGTGGTGGGGAA
GTCATCGGGGGCAGACATAGGTGGGGCCGGCGTGAGTGTGAACAAGGACA
GGGTGACGTTACCGTCAGCTGCTGCATTGTTCGGCGACGGTGTTCCGGAC
ATGAAAGCTAAGGGGCTCCTGCTCGACGTTGCCCTGGTGGTTCTTATAGT
CAGAGGATGTTGGGCCGCCCAAGCGTCGCCGACTCTTGGCGAACCCCAGT
GTTTCAGCGCCTGGACGGTAGCCGGCCAGCCTCCGCTCTTCAACGACACA
TGGGGAGGCTTGGAGATGGTGGCATTTCCGGCGGAAACATCCGTCTCAGA
GCGAGGTGGAGTAGTGCGTGGATTTGCAGATCTTCAGGACGGGCAGCATC
TAGTAACTGTGGATGACATCGTTGCAGTAGCGAAGCTAACTGAACGTCTC
GTGGAGTTGAACAAAACACCCAACCCAAATGATCAGGACTTTGCAGCAGC
GGTTGTGGGAAAGCTAGTTGGCTTATTGAGGGACAAGATGGACGATGGGA
TGACTTCGGAGCAGCTTTCACTCGCTGCATCTGCTGTTGTCGACGCTGTA
GCCGTGTTGATGAAAGAGAGACCACCCGGAGAGAGTCGTGCTAACTTGCT
CGAGCACCAGGTCGACAGTACGAATCTGGCTCAACGACAGGAGACCCGGC
ACCTGGCGAATGTACAGACGAGGCCGACCAACGGAGAAATCCGGGACATT
GAAAGGGGCATACTTGGAGATGTCCTGAAGGACGTTGACGACCTTTCTCA
TTCGCTTCTGTGGGGCAAAGCTGAGATGGGCTACATGGAGGTGGGGACCA
AGGGGGTGCGGATTGTGGTGGGGAAGTCATCGGGGGCAGACATAGGTGGG
GCCGGCGTGAGTGTGAACAAGGACAGGGTGACGTTACCGTCAGCTGCTGC
ATTGTTCGGCGACGGTGTTCCGGACATGAAAGCTAAGGGGCTCCTGCTCG
ACGTTGCCCTGGTGGTTCTTATAGTCAGAGGATGTTGGGCCGCCCAAGCG
TCGCCGACTCTTGGCGAACCCCAGTGTTTCAGCGCCTGGACGGTAGCCGG
CCAGCCTCCGCTCTTCAACGACACATGGGGAGGCTTGGAGATGGTGGCAT
TTCCGGCGGAAACATCCGTCTCAGAGCGAGGTGGAGTAGTGCGTGGATTT
GCAGATCTTCAGGACGGGCAGCATCTAGTAACTGTGGATGACATCGTTGC
AGTAGCGAAGCTAACTGAACGTCTCGTGGAGTTGAACAAAACACCCAACC
CAAATGATCAGGACTTTGCAGCAGCGGTTGTGGGAAAGCTAGTTGGCTTA
TTGAGGGACAAGATGGACGATGGGATGACTTCGGAGCAGCTTTCACTCGC
TGCATCTGCTGTTGTCGACGCTGTAGCCGTGTTGATGAAAGAGAGACCAC
CCGGAGAGAGTCGTGCTAACTTGCTCGAGCACCAGGTCGACAGTACGAAT
CTGGCTCAACGACAGGAGACCCGGCACCTGGCGAATGTACAGACGAGGCC
GACCAACGGAGAAATCCGGGACATTGAAAGGGGCATACTTGGAGATGTCC
TGAAGGACGTTGACGACCTTTCTCATTCGCTTCTGTGGGGCAAAGCTGAG
ATGGGCTACATGGAGGTGGGGACCAAGGGGGTGCGGATTGTGGTGGGGAA
GTCATCGGGGGCAGACATAGGTGGGGCCGGCGTGAGTGTGAACAAGGACA
GGGTGACGTTACCGTCAGCTGCTGCATTGTTCGGCGACGGTGTTCCGGAC
ATGAAAGCTAAGGGGCTCCTGCTCGACGTTGCCCTGGTGGTTCTTATAGT
CAGAGGATGTTGGGCCGCCCAAGCGTCGCCGACTCTTGGCGAACCCCAGT
GTTTCAGCGCCTGGACGGTAGCCGGCCAGCCTCCGCTCTTCAACGACACA
TGGGGAGGCTTGGAGATGGTGGCATTTCCGGCGGAAACATCCGTCTCAGA
GCGAGGTGGAGTAGTGCGTGGATTTGCAGATCTTCAGGACGGGCAGCATC
TAGTAACTGTGGATGACATCGTTGCAGTAGCGAAGCTAACTGAACGTCTC
GTGGAGTTGAACAAAACACCCAACCCAAATGATCAGGACTTTGCAGCAGC
GGTTGTGGGAAAGCTAGTTGGCTTATTGAGGGACAAGATGGACGATGGGA
TGACTTCGGAGCAGCTTTCACTCGCTGCATCTGCTGTTGTCGACGCTGTA
GCCGTGTTGATGAAAGAGAGACCACCCGGAGAGAGTCGTGCTAACTTGCT
CGAGCACCAGGTCGACAGTACGAATCTGGCTCAACGACAGGAGACCCGGC
ACCTGGCGAATGTACAGACGAGGCCGACCAACGGAGAAATCCGGGACATT
GAAAGGGGCATACTTGGAGATGTCCTGAAGGACGTTGACGACCTTTCTCA
TTCGCTTCTGTGGGGCAAAGCTGAGATGGGCTACATGGAGGTGGGGACCA
AGGGGGTGCGGATTGTGGTGGGGAAGTCATCGGGGGCAGACATAGGTGGG
GCCGGCGTGAGTGTGAACAAGGACAGGGTGACGTTACCGTCAGCTGCTGC
ATTGTTCGGCGACGGTGTTCCGGACATGAAAGCTAAGGGGCTCCTGCTCG
ACGTTGCCCTGGTGGTTCTTATAGTCAGAGGATGTTGGGCCGCCCAAGCG
TCGCCGACTCTTGGCGAACCCCAGTGTTTCAGCGCCTGGACGGTAGCCGG
CCAGCCTCCGCTCTTCAACGACACATGGGGAGGCTTGGAGATGGTGGCAT
TTCCGGCGGAAACATCCGTCTCAGAGCGAGGTGGAGTAGTGCGTGGATTT
GCAGATCTTCAGGACGGGCAGCATCTAGTAACTGTGGATGACATCGTTGC
AGTAGCGAAGCTAACTGAACGTCTCGTGGAGTTGAACAAAACACCCAACC
CAAATGATCAGGACTTTGCAGCAGCGGTTGTGGGAAAGCTAGTTGGCTTA
TTGAGGGACAAGATGGACGATGGGATGACTTCGGAGCAGCTTTCACTCGC
TGCATCTGCTGTTGTCGACGCTGTAGCCGTGTTGATGAAAGAGAGACCAC
CCGGAGAGAGTCGTGCTAACTTGCTCGAGCACCAGGTCGACAGTACGAAT
CTGGCTCAACGACAGGAGACCCGGCACCTGGCGAATGTACAGACGAGGCC
GACCAACGGAGAAATCCGGGACATTGAAAGGGGCATACTTGGAGATGTCC
TGAAGGACGTTGACGACCTTTCTCATTCGCTTCTGTGGGGCAAAGCTGAG
ATGGGCTACATGGAGGTGGGGACCAAGGGGGTGCGGATTGTGGTGGGGAA
GTCATCGGGGGCAGACATAGGTGGGGCCGGCGTGAGTGTGAACAAGGACA
GGGTGACGTTACCGTCAGCTGCTGCATTGTTCGGCGACGGTGTTCCGGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000077 | genome | Sc0000077:891811..896147 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97026_cuf0 |
| Biotype | protein_coding |
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