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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97025_cuf3 >transcript:BL97025_cuf3-protein ID=transcript:BL97025_cuf3-protein|Name=transcript:BL97025_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=186bp
MSEKANIDLMFATTNGSLRGVEAALKDGADIDSEVLPGIGGAALFNACIK
GHVDIARLLLSKGAYVAKRALSSSLAPIHAAASQGMTEVVELLVYHGATV
DIRDGFQYTPLMRACIHKYVDTVRRLIELGARVDLTDADGYNQIAQRHGI
EAGDRHWKECMRLIQEARKTKLLRCCNPTCCKPGYR Run BLAST on NCBI mRNA from alignment at Sc0000220:31577..36279+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97025_cuf3 ID=transcript:BL97025_cuf3|Name=transcript:BL97025_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=4703bp|location=Sequence derived from alignment at Sc0000220:31577..36279+ (Branchiostoma lanceolatum)
TAAAAGTAAATGTTGCCTTGGCTTATATACCGTGTCGAAACAAATTTAAA
AAACAGCTTATCAATATTCTTTCGCTCAGCCTTTACGTTTTAATGCTATT
CGTGTGACACAGGCCCAGTTTAGACACGCATTTTTCAGTGTACTCGGTGT
GCTTGGAAAATGCGTGTCTAAACCGGGCCAGTAGCGCCTGTGGCAAGACA
ATAGCACGTGGCAAGACAATAGCTCACGTGACAAGACAACTTCTTTCCAT
GCCTCCGCAGTTCAAACTTAGACAGCACGCGAACAAGGTGTCCGTAACAG
TGGTCCCAACAAAATGTCGGAAAAGGCTAATATAGATCTAATGTTTGCTA
CTACGAATGGATCACTTCGAGGCGTTGAAGCGGCTTTGAAAGATGGTGAG
CACATATTGTAATTCTTCACGAAAGCGTATATGATTTAATGACGTCGACG
CAATACAACCTGGTGTCGGACCAAGTGATTTTCAAGTGCAAAACTTTCTC
TACAATATAAAATCTCGCATGAGTAATTCAGTTTTACTAAACTGTAATCA
TTAACCACCAAACGCAGGTGCAGACATTGACTCCGAGGTACTACCGGGCA
TCGGTGGCGCAGCATTGTTCAATGCTTGCATCAAGGGGCATGTAGACATA
GCCAGACTGCTACTCAGCAAGGGGGCTTATGTAGCGAAGAGAGCGCTGAG
CAGTTCATTAGCTCCCATCCATGCAGCAGCGTCCCAAGGTAGGTCAATTC
AAACCGCATGATTGTTTATAAGATATTGAGATATCATATAGACTCTTCCA
CATTCACAGGGAAGGACGAAGACAACAGCGTTGATTATTGATATAATGTT
TCGCCACATTATGTATTATAACTTACATGTATACAATAATATAACGAATA
GCCGGACCCTTTTAAAAGCGAAGGATTAACCGTGCATAAATCAACATGGG
CATTCAAAAACATAGGTACATGTACTACTAGTATGTGTTACTAATGCCAG
TACGAAAAATGGTTGTCAGTAGCCCAGGCTAGACAATTACAGTACTAGAC
TACGGGGGGAACTGAAAAGCTATCTGTGATAGTTTATCTGACTAAGTGTC
TCTTTGTGTTTAGATTGCACGTTTTGCTTGTCACTAACGGTTGATACACA
TTTCTTATGTCACAAATCCAACTTCAGGTATGACGGAAGTGGTGGAGTTG
CTGGTGTATCATGGTGCAACAGTAGACATACGGGACGGCTTCCAGTATAC
ACCACTCATGAGAGCCTGTATCCACAAATATGTGGACACAGTTCGACGAC
TGATTGAGCTTGGAGCAAGAGTTGATTTGACCGACGCCGACGGCTACAAC
CAGATAGCCCAGAGGTAAGTGTCACATCCTTTGAGAATCATGATACAATG
TATGATTGTTTCTTCTGTAGATAAATTTTCAAATAAGGCTGGACTAAGTA
CTAGTGATTGTGTTTTGAACCTCTTTGTTTTGTCTCTGTTTCCCACTAGG
CATGGGATTGAAGCAGGAGACCGTCATTGGAAAGAGTGTATGAGGCTGAT
ACAAGAGGCGAGGAAGACCAAGCTGTTGAGATGCTGTAACCCAACGTGTT
GCAAACCAGGCTACAGGTAGGATTTGCTGATGACGTTTCCGTTAAATGTT
TTATTTTCACATTGTCATCTTATTAGCAAATGTTGTTATTACAGGCACTA
AACAGCATTTCTACCTGTTACATCCCCTACAGGAAAACCCTGAAGCTGTG
TGCACAGTGCAAGCTGACCCGCTACTGCAGCCGGGACTGTCAGATACAAC
ACTGGTCTGTCGGACACAAGAAGTGCTGTGGACATGACGCGTACACTGGC
GAGAGACTGACCCCCTTCCAAAAATAGTTATGTTAGGGCAAACTTATCTG
AGAACATTTTAGAACACATGTAGCAAACGCTATTCTGTAGAATTTTACGG
CTTTTTGCATCTTTTCAACGGCTATATGAAATGACTAATCTTTCCCAGTA
TATGCAGTATTGTTTAGCAGACTATGCCGTTACAGCCATACCAGACATAA
CTCTTTCTTACTCAGGACATGATGCTGGTGTCTTTGTAGAAAATAATGTT
GTGCCAAAATTGTTTTTTCCACACGCATTCTGGTCCAAAAGGTCCGACAA
TACAGTTGTATTACCATGTTTGCTTCTCTTGTAAACAAAAGTCAGTGTCA
ATAACGGGGGTCGGTAATAAAAGTAACTGAACGAAGTAGTGAATGTATTC
AACTGATGAAGTGTGTAGCCATGTGTTATCATCTAGGGGGATAAACGTAA
CAAGTGGCCATAGCTCTGGTATCAATGAATTATCACCTTTGCTCCAAGGA
TATCGCTTGTTCATATTCAGTTGGATGTTTTTTACCATTTCGCTCATAGA
TGTTCTAGTAATGCTACGGTGACATTTCCAAACCGGGGCCCGGCCGGGCA
GTTTGCTGGAACGATAAGTATGATATAAAAGACAAAAAAACCCACAGACA
TAAAAAATATCAATCATGAGCATGATTTGTGTATATTTCTTGACATACAT
TTTAATTTTAATTCTTAATTTTAAAATTCAGCCCGGCCGGGCCCCGGTTT
GGAAATGTGACCGTAGCATAATCATTACGAATTTTGCCCAACATTAGCGC
CTGTTTTCTTTCCTTGAAACTTTCAAATTCACAAGAAGCCAAACTAAAGT
AATTTTATACAACTATACAAAGTTCATCAATTGATCTGTAGTATCATAAC
AGTCTGCCTTGTGTCAGGGCCACATTCTAAACCAGTGCCCGGTCGGGCAG
TTTGCGGGAACGAAACAAAGCGTTAAAAATAATTTGTGCATATTTCTTAA
TATACACTTTTATTTCAAGTTCCCGCAAACAGCCCAATCGGGCCCTGATT
CAGAATTGTGACGTTGGAACCCTGTGCTTAAGAATAAATGTTTAGAGTAA
TAATAAGCTACAGTGAAAACAAAGAAAACACAGTCGTCCCAAAATTATAT
TCACTCTTTGTCATATCATATACTCTGGTTGGATGGGGAATCTTCTACTT
CTTGTACATGCATATTTACAGAGACATTCATATTTACTTCTGACTTTCTT
TCCAATTTGATACATCAATTTGATACATCAACGAGATCTAACCTACGGTT
GCAATAAAAGCTTCTTCTGCAACTGGATACGGTCTTCGCAACCATTAGAT
CTGCTTGGAGATTAAACATCGATCACATCCGGGGCAAGTCAGAAAAGGGT
AGTGATCTTCCCTCCCAACATCTGTTTGAACAGTCCATAAAAGATAGCAG
CTAATCGCAAGAATTGAACATACATGTGCACATTTACGGATTATAGTCTT
TGCATATCATTGTGCATCAATCAATAAGATATGTGCAAATTTGATTTTTC
TGAAAAATCTTTCCTAGTGGAACAGCTTTTAAATATTCCTCTTCAGCACC
TTAACGTTCTCATACCACTCATGCATGTGACTAGTTGCTCCCGTGGGGAA
ACAATAGATCACTTGACAAGACAACTTCTTGTCATGTTTATTCATTCCAA
GTCAGACTCACGTACGCAAGGTGTCGACAGCGGCGGTCCAAACGAAATGG
CGAAATCTTGTGATGTGAATGAACGTTTATTGTATGCTGCTTTGGATGGA
TCACTTCAAGACGTTAAAGCGGCCTTGAAAGCTGTTGTAATTCTTTCCCA
AATGCGCCATACAACCTAGTCACGGCAAGGAGGTTTAAAACCTCCTTGGT
CACGGTCAAAACTATTCAGAAGGAAACGCCAAAAATAATTACTCAAGCAA
CTGGATAAGATTTTATCCAAAAATCTTATCCAGTTGCTTGAGTAATTATT
TTTGGCGTATCTTATTACCTTGATGTCTAACCTTCATCAACGTATTCAGA
AGGAATTTTGGTGCCAACCACACATTCTGGAGTTGAGTTTGTGACGTGTT
TGATCTTAAAATATAAAGTTGAATACCACCTTTCCTTCCTCATTAATGGT
ATCCGAAATATCCTCCACCAAAGTCATCCTTTGACGACTCAGTTTAGCGA
GTGTAGCAGCCCCGGTAGTAATCGGATGGCACCCAGGCTAGACTTTTTGA
ACCAGGACTGAAATACATGTATTATCATAATGTTGTTTCCTGCTGCTTAT
CTCCCTCTGTGCACCCCGCCAAGCCGGTTAATCGAGACTGTTGATAGACT
AGAATCTGTGCACAGTACAGTACAGTACAGTTCGTATTATAGTTTTCTTG
TAGTATGTGCTAATGTACATTTTAGTACATGTCATCGGTTGTTTTATTCT
ACTAGTGTTGTTTGCATCTGCAGTTTACAACAGAATTGTAGTAAAATGTT
TATTTCTCAAATTTGAATTTTAAAAAATGACTTTAGACCAAAAGATGTTA
TTGAAATGCAAATTAGCACAAATGGGTTAGCACGCAAGTGTGAAGTACAG
GGCTCTTGTGACACATGTTGTTCTTCTTCGTGTTATGTAGACAATTTACA
TACGATCTCAGATTGAAAAGGAAAGTCTGGCGCGACTGTAGTGGGCCACT
TTGTCTTTTGTTCTATCCGATCTTATAACACAAAACACGTCAATGACAAT
TACAATTACAACTAGAGTTCAACGACCTCATACCTTCGCCAAATGATTTT
AACCTTTTAAAGTTTATGACTGACGTATTAGGAGTGTGGTGGATAAATGG
TAA Coding sequence (CDS) from alignment at Sc0000220:31577..36279+ >transcript:BL97025_cuf3 ID=transcript:BL97025_cuf3|Name=transcript:BL97025_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2244bp|location=Sequence derived from alignment at Sc0000220:31577..36279+ (Branchiostoma lanceolatum)
ATGTCGGAAAAGGCTAATATAGATCTAATGTTTGCTACTACGAATGGATC
ACTTCGAGGCGTTGAAGCGGCTTTGAAAGATGGTGCAGACATTGACTCCG
AGGTACTACCGGGCATCGGTGGCGCAGCATTGTTCAATGCTTGCATCAAG
GGGCATGTAGACATAGCCAGACTGCTACTCAGCAAGGGGGCTTATGTAGC
GAAGAGAGCGCTGAGCAGTTCATTAGCTCCCATCCATGCAGCAGCGTCCC
AAGGTATGACGGAAGTGGTGGAGTTGCTGGTGTATCATGGTGCAACAGTA
GACATACGGGACGGCTTCCAGTATACACCACTCATGAGAGCCTGTATCCA
CAAATATGTGGACACAGTTCGACGACTGATTGAGCTTGGAGCAAGAGTTG
ATTTGACCGACGCCGACGGCTACAACCAGATAGCCCAGAGGCATGGGATT
GAAGCAGGAGACCGTCATTGGAAAGAGTGTATGAGGCTGATACAAGAGGC
GAGGAAGACCAAGCTGTTGAGATGCTGTAACCCAACGTGTTGCAAACCAG
GCTACAGGTAGATGTCGGAAAAGGCTAATATAGATCTAATGTTTGCTACT
ACGAATGGATCACTTCGAGGCGTTGAAGCGGCTTTGAAAGATGGTGCAGA
CATTGACTCCGAGGTACTACCGGGCATCGGTGGCGCAGCATTGTTCAATG
CTTGCATCAAGGGGCATGTAGACATAGCCAGACTGCTACTCAGCAAGGGG
GCTTATGTAGCGAAGAGAGCGCTGAGCAGTTCATTAGCTCCCATCCATGC
AGCAGCGTCCCAAGGTATGACGGAAGTGGTGGAGTTGCTGGTGTATCATG
GTGCAACAGTAGACATACGGGACGGCTTCCAGTATACACCACTCATGAGA
GCCTGTATCCACAAATATGTGGACACAGTTCGACGACTGATTGAGCTTGG
AGCAAGAGTTGATTTGACCGACGCCGACGGCTACAACCAGATAGCCCAGA
GGCATGGGATTGAAGCAGGAGACCGTCATTGGAAAGAGTGTATGAGGCTG
ATACAAGAGGCGAGGAAGACCAAGCTGTTGAGATGCTGTAACCCAACGTG
TTGCAAACCAGGCTACAGGTAGATGTCGGAAAAGGCTAATATAGATCTAA
TGTTTGCTACTACGAATGGATCACTTCGAGGCGTTGAAGCGGCTTTGAAA
GATGGTGCAGACATTGACTCCGAGGTACTACCGGGCATCGGTGGCGCAGC
ATTGTTCAATGCTTGCATCAAGGGGCATGTAGACATAGCCAGACTGCTAC
TCAGCAAGGGGGCTTATGTAGCGAAGAGAGCGCTGAGCAGTTCATTAGCT
CCCATCCATGCAGCAGCGTCCCAAGGTATGACGGAAGTGGTGGAGTTGCT
GGTGTATCATGGTGCAACAGTAGACATACGGGACGGCTTCCAGTATACAC
CACTCATGAGAGCCTGTATCCACAAATATGTGGACACAGTTCGACGACTG
ATTGAGCTTGGAGCAAGAGTTGATTTGACCGACGCCGACGGCTACAACCA
GATAGCCCAGAGGCATGGGATTGAAGCAGGAGACCGTCATTGGAAAGAGT
GTATGAGGCTGATACAAGAGGCGAGGAAGACCAAGCTGTTGAGATGCTGT
AACCCAACGTGTTGCAAACCAGGCTACAGGTAGATGTCGGAAAAGGCTAA
TATAGATCTAATGTTTGCTACTACGAATGGATCACTTCGAGGCGTTGAAG
CGGCTTTGAAAGATGGTGCAGACATTGACTCCGAGGTACTACCGGGCATC
GGTGGCGCAGCATTGTTCAATGCTTGCATCAAGGGGCATGTAGACATAGC
CAGACTGCTACTCAGCAAGGGGGCTTATGTAGCGAAGAGAGCGCTGAGCA
GTTCATTAGCTCCCATCCATGCAGCAGCGTCCCAAGGTATGACGGAAGTG
GTGGAGTTGCTGGTGTATCATGGTGCAACAGTAGACATACGGGACGGCTT
CCAGTATACACCACTCATGAGAGCCTGTATCCACAAATATGTGGACACAG
TTCGACGACTGATTGAGCTTGGAGCAAGAGTTGATTTGACCGACGCCGAC
GGCTACAACCAGATAGCCCAGAGGCATGGGATTGAAGCAGGAGACCGTCA
TTGGAAAGAGTGTATGAGGCTGATACAAGAGGCGAGGAAGACCAAGCTGT
TGAGATGCTGTAACCCAACGTGTTGCAAACCAGGCTACAGGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000220 | genome | Sc0000220:31577..36279 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97025_cuf3 |
| Biotype | protein_coding |
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