transcript:BL96945_cuf17 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96945_cuf17
Unique Nametranscript:BL96945_cuf17
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96945_cuf17

>transcript:BL96945_cuf17-protein ID=transcript:BL96945_cuf17-protein|Name=transcript:BL96945_cuf17|organism=Branchiostoma lanceolatum|type=polypeptide|length=173bp
STVIDFTALGSLKEVLPEALCQNAADVINSWLTSTTPKPTTKPTTTSRPD
DPPVAEAGVDQTVQSTQTAVMLDGSGSHDDHGIVSWLWQYPDQNLPLSLG
DTTSPTMAVSGLVPGEYTFTLTVTDASGQQDTDDVTIVVTKPTTPAPTTT
KGTTTPTAPLDHPPVAFAGADEI
Run BLAST on NCBI

mRNA from alignment at Sc0000044:1015725..1018362+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96945_cuf17 ID=transcript:BL96945_cuf17|Name=transcript:BL96945_cuf17|organism=Branchiostoma lanceolatum|type=mRNA|length=2638bp|location=Sequence derived from alignment at Sc0000044:1015725..1018362+ (Branchiostoma lanceolatum)
CTCGACTGTCATCGATTTCACAGCACTGGGGTCGCTCAAGGAGGTTCTAC
CAGAGGCACTGTGTCAGAGTACGTAATATTGCTTTAACCTTCTGTGTTAA
GATTATGGGTTAAGTAGCAAGGGAATGGTTAAGGTATAACTGCAGTAAGT
CGCCAGCAGTCCTGTCTACGCCTCGACTGTCATCGACTTAATTCATTTCA
CAGCGCTAGGATCGCTTAAGAAGGTCCTAGCGGAGACGCTGTGCCAGAGT
ACGTAGTATAATATCTAACCTTAAGCATGCAAAAGTCTTTGTTTAGTCAG
ATACAATTTTGCATACGTGTAGAGATAGATAGATAGATAGATAGATAAAT
AAATAGATCGATCGATAGATAGATAGATGATTTTTACGACAAAGACACCT
TGACAATTCATTCTACATATTACTTCATTGCCGCCTGTATTGATAGTCCT
ATGCCCATGCACTTCCCTACAGATGCTGCTGACGTCATCAACAGCTGGCT
GACGTCAACCACCCCCAAACCAACCACGAAACCGACCACCACATCCAGGC
CAGGTAGATAAAAAACGACGTTGAATTTTCTGTACCCTAGTCCAATTTAC
TAGCAGTAGGACTTGGTAGATAAGCTGCATACCTGGTGGCGCTGTGGCAA
GATGAAGAGCCGGTTTTACGTCAAAAACTGTACCATTTATAATATGCAAG
GTTACGATTTAATATACAATTGATACAATATGCATGGTGGGATTTGATGT
CACACAAATAATGTGTAAGGATGATCAAACGAAAACATCGGGGCTGAGTA
ACAATGTGTGATAGCAGCTAAAAAATTGAAAAGATTGCCACACACATTTC
ACAAATTCCTTTTCTATACTTGACATGGCTTTGCACCATTTTTGACAAAG
TTGTCTTTTTTCTAGGTATTCAAATTATATATCTTCAGACAGCCCTTTGT
AGGTTGAGATTGAATCACGTACTGATTTTTGTTGAATAATTTCACGGGAA
GTTGCTGAAAGGTTGGAATGTATAACATGTTATTTTTTCCGTATCTCCAG
ACGACCCCCCTGTCGCTGAAGCTGGCGTGGACCAGACCGTGCAGAGCACC
CAGACGGCCGTGATGCTGGACGGGTCCGGTAGTCATGACGACCACGGCAT
CGTCTCCTGGCTCTGGCAGTACCCCGACCAGAACCTGCCTCTCAGTCTGG
GGGTAAGGCATGATATAACTCACTGTTATTCTGCTGGTAAACTGTTAGTT
AATAGCTATAGGTATCAATGTTATCAATTGTGCCATGTGTTGATGACGAC
AACAGTTTCGTCCCCTGGCTATTGCAGTATCCTGACCAGAACCTACTTCT
TAGTCTTAGGATGAAAATCACGGCGTTTTAGAATATCCACACATATGATT
ATCCTTTTCATATAAACCAAATTGCTATAATTCTAAAGAGTTCGGAAACT
TCCGATTCACTCTGCATCCTACCTGCTCTGCTCAGCTTGCCATTTTGACC
CGAAGATGGATAGGTCACTTTTGATCATGTAAAATCATAAATTTCCATGT
ATTTTAACCATGATATATGTTGATTTAAGTAGACGTTAGTTATACTCGTA
ACTTTGATGTCAAGATCAGTTGGGAAAGCGAACTGAGGAACAAGTGCGTA
ATCATATTGTTTTTCAGTCAGTCTAGTAAAAATTCTACTAAAATTTAAAG
ATTAAGACCTTTTAACTGCGCAGGATACAAGTTCAGATTCAAATCAAAAT
GACTTTATCTAAACTGTACGTTCCATCACTTCCCAGGATACGACCTCCCC
GACCATGGCCGTGAGCGGGCTGGTTCCCGGAGAGTACACCTTCACCTTGA
CCGTGACCGACGCGTCAGGACAGCAGGACACTGATGACGTCACTATCGTG
GTGACCAAACCGACCACACCTGCCCCGACAACCACCAAGGGAACCACAAC
ACCCACTGCGCGTAAGGGGGAAATACATTTTCATTTGTAGATTCATTGTG
AGAAGGCATGTTCTGATCTCTATGTAGGGTTTTCGTGCCCCCAATTGACC
AGAGCTCAGCTTATAGTCTGACATCTTCAACAGGTCTCTGTCCACCTGTT
ACTAAGCTTGCTTTTTGGGTGCCTTTTCAGTGATATCGTGTTACAATGAA
TTGGGGGATAATCACGGATTTCGGGATCTTTTGTTGTAACGATGAGTCTT
TTCTTCATTTGCCTTTCTTCGTATTGTGAGAGTATCTAAATATATTGAGA
TCTGGTACTCTCTTTGCCTTTAGTTAACAGCCTAAACCCACTGACAGGTT
TTTTTAGAAGAGTAACAATATGCCTTTCTGATCGTCCCCAGCTTTAGAAC
ACCCCCCTGTGGCGTTTGCCAGCGCTGACTAAGCGTTAATCTGTTCTAAT
AGTCTAACAGTTATGACAGATACATGTAGCTTTACCTTAGTAACAACGTG
CCTTTCTGATCGTCCCCAGCCGTGGACCACCCTCCCGTGGCGTTTGCCGG
CACTGACGAGATCGTTCACCTACCCTTAGAGCCTAAACATACCGACATAC
ATCTTAACAAGAGTAACAAAACGCGTTTCTGGTTTTCCGCAGCCCTAGAC
CACCCTCCTGTGGCGTTTGCCGGCGCGGACGAGATCGT

Coding sequence (CDS) from alignment at Sc0000044:1015725..1018362+

>transcript:BL96945_cuf17 ID=transcript:BL96945_cuf17|Name=transcript:BL96945_cuf17|organism=Branchiostoma lanceolatum|type=CDS|length=2595bp|location=Sequence derived from alignment at Sc0000044:1015725..1018362+ (Branchiostoma lanceolatum)
TCGACTGTCATCGATTTCACAGCACTGGGGTCGCTCAAGGAGGTTCTACC
AGAGGCACTGTGTCAGAATGCTGCTGACGTCATCAACAGCTGGCTGACGT
CAACCACCCCCAAACCAACCACGAAACCGACCACCACATCCAGGCCAGAC
GACCCCCCTGTCGCTGAAGCTGGCGTGGACCAGACCGTGCAGAGCACCCA
GACGGCCGTGATGCTGGACGGGTCCGGTAGTCATGACGACCACGGCATCG
TCTCCTGGCTCTGGCAGTACCCCGACCAGAACCTGCCTCTCAGTCTGGGG
GATACGACCTCCCCGACCATGGCCGTGAGCGGGCTGGTTCCCGGAGAGTA
CACCTTCACCTTGACCGTGACCGACGCGTCAGGACAGCAGGACACTGATG
ACGTCACTATCGTGGTGACCAAACCGACCACACCTGCCCCGACAACCACC
AAGGGAACCACAACACCCACTGCGCCCCTAGACCACCCTCCTGTGGCGTT
TGCCGGCGCGGACGAGATCTCGACTGTCATCGATTTCACAGCACTGGGGT
CGCTCAAGGAGGTTCTACCAGAGGCACTGTGTCAGAATGCTGCTGACGTC
ATCAACAGCTGGCTGACGTCAACCACCCCCAAACCAACCACGAAACCGAC
CACCACATCCAGGCCAGACGACCCCCCTGTCGCTGAAGCTGGCGTGGACC
AGACCGTGCAGAGCACCCAGACGGCCGTGATGCTGGACGGGTCCGGTAGT
CATGACGACCACGGCATCGTCTCCTGGCTCTGGCAGTACCCCGACCAGAA
CCTGCCTCTCAGTCTGGGGGATACGACCTCCCCGACCATGGCCGTGAGCG
GGCTGGTTCCCGGAGAGTACACCTTCACCTTGACCGTGACCGACGCGTCA
GGACAGCAGGACACTGATGACGTCACTATCGTGGTGACCAAACCGACCAC
ACCTGCCCCGACAACCACCAAGGGAACCACAACACCCACTGCGCCCCTAG
ACCACCCTCCTGTGGCGTTTGCCGGCGCGGACGAGATCTCGACTGTCATC
GATTTCACAGCACTGGGGTCGCTCAAGGAGGTTCTACCAGAGGCACTGTG
TCAGAATGCTGCTGACGTCATCAACAGCTGGCTGACGTCAACCACCCCCA
AACCAACCACGAAACCGACCACCACATCCAGGCCAGACGACCCCCCTGTC
GCTGAAGCTGGCGTGGACCAGACCGTGCAGAGCACCCAGACGGCCGTGAT
GCTGGACGGGTCCGGTAGTCATGACGACCACGGCATCGTCTCCTGGCTCT
GGCAGTACCCCGACCAGAACCTGCCTCTCAGTCTGGGGGATACGACCTCC
CCGACCATGGCCGTGAGCGGGCTGGTTCCCGGAGAGTACACCTTCACCTT
GACCGTGACCGACGCGTCAGGACAGCAGGACACTGATGACGTCACTATCG
TGGTGACCAAACCGACCACACCTGCCCCGACAACCACCAAGGGAACCACA
ACACCCACTGCGCCCCTAGACCACCCTCCTGTGGCGTTTGCCGGCGCGGA
CGAGATCTCGACTGTCATCGATTTCACAGCACTGGGGTCGCTCAAGGAGG
TTCTACCAGAGGCACTGTGTCAGAATGCTGCTGACGTCATCAACAGCTGG
CTGACGTCAACCACCCCCAAACCAACCACGAAACCGACCACCACATCCAG
GCCAGACGACCCCCCTGTCGCTGAAGCTGGCGTGGACCAGACCGTGCAGA
GCACCCAGACGGCCGTGATGCTGGACGGGTCCGGTAGTCATGACGACCAC
GGCATCGTCTCCTGGCTCTGGCAGTACCCCGACCAGAACCTGCCTCTCAG
TCTGGGGGATACGACCTCCCCGACCATGGCCGTGAGCGGGCTGGTTCCCG
GAGAGTACACCTTCACCTTGACCGTGACCGACGCGTCAGGACAGCAGGAC
ACTGATGACGTCACTATCGTGGTGACCAAACCGACCACACCTGCCCCGAC
AACCACCAAGGGAACCACAACACCCACTGCGCCCCTAGACCACCCTCCTG
TGGCGTTTGCCGGCGCGGACGAGATCTCGACTGTCATCGATTTCACAGCA
CTGGGGTCGCTCAAGGAGGTTCTACCAGAGGCACTGTGTCAGAATGCTGC
TGACGTCATCAACAGCTGGCTGACGTCAACCACCCCCAAACCAACCACGA
AACCGACCACCACATCCAGGCCAGACGACCCCCCTGTCGCTGAAGCTGGC
GTGGACCAGACCGTGCAGAGCACCCAGACGGCCGTGATGCTGGACGGGTC
CGGTAGTCATGACGACCACGGCATCGTCTCCTGGCTCTGGCAGTACCCCG
ACCAGAACCTGCCTCTCAGTCTGGGGGATACGACCTCCCCGACCATGGCC
GTGAGCGGGCTGGTTCCCGGAGAGTACACCTTCACCTTGACCGTGACCGA
CGCGTCAGGACAGCAGGACACTGATGACGTCACTATCGTGGTGACCAAAC
CGACCACACCTGCCCCGACAACCACCAAGGGAACCACAACACCCACTGCG
CCCCTAGACCACCCTCCTGTGGCGTTTGCCGGCGCGGACGAGATC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96945gene:BL96945Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96945_cuf17transcript:BL96945_cuf17-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96945_cuf17-E1BL96945_cuf17-E1-1564476830-212187Branchiostoma lanceolatumexon
BL96945_cuf17-E2BL96945_cuf17-E2-1564476830-212189Branchiostoma lanceolatumexon
BL96945_cuf17-E3BL96945_cuf17-E3-1564476830-212191Branchiostoma lanceolatumexon
BL96945_cuf17-E4BL96945_cuf17-E4-1564476830-212193Branchiostoma lanceolatumexon
BL96945_cuf17-E5BL96945_cuf17-E5-1564476830-212196Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000044genomeSc0000044:1015725..1018362 +
Properties
Property NameValue
Transcript idBL96945_cuf17
Biotypeprotein_coding