|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96912_cuf1 >transcript:BL96912_cuf1-protein ID=transcript:BL96912_cuf1-protein|Name=transcript:BL96912_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=186bp
CAVHTPLVTLHRTRTLTGSGSSTVHRVERLPTESAMGSKRVAIIGAGVSG LTSIKACLEEGLQPVCFEQHEDLGGVWYYSDDVRPNQGAAMYRSLITNSS KEMMSFSDFPFPKDTPPYLPYHRVHTYLQDYAQHFDLKKHIRFGTQVSRI EKTEDFDETGRWEVRTVQTGYSDGEQKEIFDAIMGV Run BLAST on NCBI mRNA from alignment at Sc0000229:26023..27756- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96912_cuf1 ID=transcript:BL96912_cuf1|Name=transcript:BL96912_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=1734bp|location=Sequence derived from alignment at Sc0000229:26023..27756- (Branchiostoma lanceolatum) GTTGTGCTGTCCACACACCGCTAGTAACGTTACACCGTACGCGTACTTTG
ACCGGCAGTGGCTCGTCGACAGTTCATCGCGTGGAAAGGTTACCTACTGA
ATCAGGTAAGAGCAAGTAAGCTTAATCCCCAGTTCTTTAAGGTGAGGGTT
GCACGGGGCAGAGTGGGTGAGATTTTGTATCATATTACTGCTTGTGTAAG
GTTTCCCTGATTTGGCTTTCTTTGCTTCGCTTCACAAATCGGCCATGTAA
TTAAGAGGTTTCTACTGCACTTTATTAGTATCTTAGTATAGGTATAACCT
GTTGATATCGCAGTACTTAGTATCCTTATCCATTATAGAATTTACGATTA
ACCTTCGACATATAGTTGCAAATAAATCATTTTTACTTTTAATTGTTATT
TTGAATTCAGAAAAATAGTATTTGATTAAATGTAGAACCTGTGTCTTGAG
TAGTTGACCCCTTTAAAATTCGATAATTTTGTGGTCCCGTAAAACTCGAT
CCTGTTTGTCCCTCCCTAGCCATGGGTTCTAAGAGAGTGGCCATTATAGG
AGCCGGAGTGAGCGGACTCACGTCAATCAAGGCTTGTCTGGAGGAGGGGC
TGCAGCCTGTCTGTTTCGAGCAACATGAGGATCTCGGTAAGAACAAGACA
TTACACGTCCTAAAGTTCATTTCAATAGCGTTGAAGAATAAAATAGCGAA
TTCCGTTCTGACTGATATAGCTTGACAATACAAAAAGGCTTCGTGGACTA
AATTTGAATACAGTAGTATAGACTATCTTTGAGACCCCCGATAGAAGAGC
TGAAAATAGAAGGGAAGGATGTGTACATATGCGTGTGCATACGACTTTTG
AGGTACGGTAAATCATGCTCGCCTGTTATAAAATCCCTATCATTTGTATA
GTCAATAGGCCACCTGCTGCCATGCTGCTATCTTACTTTTGAAAATATGA
CTATACGTAGTCCCTGACACTGGAGGTGAATTATATTTGTTCCCTTGACT
TCTACCTGCTGTGTGCTACTGCAAATAATCTCGATGCAAACCGCTATTCC
AGGCGGCGTGTGGTACTACTCTGACGATGTCAGGCCCAACCAGGGGGCCG
CCATGTACCGCTCTCTCATCACAAACTCCAGTAAAGAAATGATGTCATTC
AGCGACTTCCCCTTCCCCAAGGACACGCCCCCCTACCTGCCGTACCACCG
TGTGCACACATATCTACAGGACTACGCTCAGCACTTCGACCTGAAGAAAC
ACATCCGATTCGGCACACAGGTAGGGATATCCTTGTTGAACCATGGCCAT
TGATTCTATAACATCTGTACTAAGATCTTTGTTTTGATGTCCTTCTTTCT
TACGTTCAACGCTGTCTATCACTCCAGGTCAGTCGCATAGAGAAGACAGA
AGACTTTGATGAGACTGGCCGGTGGGAGGTCCGTACTGTACAGACGGGTT
ATAGCGATGGGGAACAGAAAGAGATCTTTGACGCCATCATGGTACGTACT
AACGGGGCTATAGAAACAGAAATGTTTAACACAGCAATGACTGATGATCT
CCGATAAGAGTGAAGCGTAATAAACCCAGCCGTCCACTTACGCCATCTTT
TACATGAGGCTGACGATGTGATGGTTCACCGTTCTTTGGCCCTTCGATAT
TGTTGAACTTAAAGTCCCTATGTAAGCAAACTTCTCTCAACTTTATCTCA
CGACGCTCTGTTTCCTCCCCAGGTGTGTAACGGC Coding sequence (CDS) from alignment at Sc0000229:26023..27756- >transcript:BL96912_cuf1 ID=transcript:BL96912_cuf1|Name=transcript:BL96912_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2805bp|location=Sequence derived from alignment at Sc0000229:26023..27756- (Branchiostoma lanceolatum) TGTGCTGTCCACACACCGCTAGTAACGTTACACCGTACGCGTACTTTGAC CGGCAGTGGCTCGTCGACAGTTCATCGCGTGGAAAGGTTACCTACTGAAT CAGCCATGGGTTCTAAGAGAGTGGCCATTATAGGAGCCGGAGTGAGCGGA CTCACGTCAATCAAGGCTTGTCTGGAGGAGGGGCTGCAGCCTGTCTGTTT CGAGCAACATGAGGATCTCGGCGGCGTGTGGTACTACTCTGACGATGTCA GGCCCAACCAGGGGGCCGCCATGTACCGCTCTCTCATCACAAACTCCAGT AAAGAAATGATGTCATTCAGCGACTTCCCCTTCCCCAAGGACACGCCCCC CTACCTGCCGTACCACCGTGTGCACACATATCTACAGGACTACGCTCAGC ACTTCGACCTGAAGAAACACATCCGATTCGGCACACAGGTCAGTCGCATA GAGAAGACAGAAGACTTTGATGAGACTGGCCGGTGGGAGGTCCGTACTGT ACAGACGGGTTATAGCGATGGGGAACAGAAAGAGATCTTTGACGCCATCA TGGGTGTGTAATGTGCTGTCCACACACCGCTAGTAACGTTACACCGTACG CGTACTTTGACCGGCAGTGGCTCGTCGACAGTTCATCGCGTGGAAAGGTT ACCTACTGAATCAGCCATGGGTTCTAAGAGAGTGGCCATTATAGGAGCCG GAGTGAGCGGACTCACGTCAATCAAGGCTTGTCTGGAGGAGGGGCTGCAG CCTGTCTGTTTCGAGCAACATGAGGATCTCGGCGGCGTGTGGTACTACTC TGACGATGTCAGGCCCAACCAGGGGGCCGCCATGTACCGCTCTCTCATCA CAAACTCCAGTAAAGAAATGATGTCATTCAGCGACTTCCCCTTCCCCAAG GACACGCCCCCCTACCTGCCGTACCACCGTGTGCACACATATCTACAGGA CTACGCTCAGCACTTCGACCTGAAGAAACACATCCGATTCGGCACACAGG TCAGTCGCATAGAGAAGACAGAAGACTTTGATGAGACTGGCCGGTGGGAG GTCCGTACTGTACAGACGGGTTATAGCGATGGGGAACAGAAAGAGATCTT TGACGCCATCATGGGTGTGTAATGTGCTGTCCACACACCGCTAGTAACGT TACACCGTACGCGTACTTTGACCGGCAGTGGCTCGTCGACAGTTCATCGC GTGGAAAGGTTACCTACTGAATCAGCCATGGGTTCTAAGAGAGTGGCCAT TATAGGAGCCGGAGTGAGCGGACTCACGTCAATCAAGGCTTGTCTGGAGG AGGGGCTGCAGCCTGTCTGTTTCGAGCAACATGAGGATCTCGGCGGCGTG TGGTACTACTCTGACGATGTCAGGCCCAACCAGGGGGCCGCCATGTACCG CTCTCTCATCACAAACTCCAGTAAAGAAATGATGTCATTCAGCGACTTCC CCTTCCCCAAGGACACGCCCCCCTACCTGCCGTACCACCGTGTGCACACA TATCTACAGGACTACGCTCAGCACTTCGACCTGAAGAAACACATCCGATT CGGCACACAGGTCAGTCGCATAGAGAAGACAGAAGACTTTGATGAGACTG GCCGGTGGGAGGTCCGTACTGTACAGACGGGTTATAGCGATGGGGAACAG AAAGAGATCTTTGACGCCATCATGGGTGTGTAATGTGCTGTCCACACACC GCTAGTAACGTTACACCGTACGCGTACTTTGACCGGCAGTGGCTCGTCGA CAGTTCATCGCGTGGAAAGGTTACCTACTGAATCAGCCATGGGTTCTAAG AGAGTGGCCATTATAGGAGCCGGAGTGAGCGGACTCACGTCAATCAAGGC TTGTCTGGAGGAGGGGCTGCAGCCTGTCTGTTTCGAGCAACATGAGGATC TCGGCGGCGTGTGGTACTACTCTGACGATGTCAGGCCCAACCAGGGGGCC GCCATGTACCGCTCTCTCATCACAAACTCCAGTAAAGAAATGATGTCATT CAGCGACTTCCCCTTCCCCAAGGACACGCCCCCCTACCTGCCGTACCACC GTGTGCACACATATCTACAGGACTACGCTCAGCACTTCGACCTGAAGAAA CACATCCGATTCGGCACACAGGTCAGTCGCATAGAGAAGACAGAAGACTT TGATGAGACTGGCCGGTGGGAGGTCCGTACTGTACAGACGGGTTATAGCG ATGGGGAACAGAAAGAGATCTTTGACGCCATCATGGGTGTGTAATGTGCT GTCCACACACCGCTAGTAACGTTACACCGTACGCGTACTTTGACCGGCAG TGGCTCGTCGACAGTTCATCGCGTGGAAAGGTTACCTACTGAATCAGCCA TGGGTTCTAAGAGAGTGGCCATTATAGGAGCCGGAGTGAGCGGACTCACG TCAATCAAGGCTTGTCTGGAGGAGGGGCTGCAGCCTGTCTGTTTCGAGCA ACATGAGGATCTCGGCGGCGTGTGGTACTACTCTGACGATGTCAGGCCCA ACCAGGGGGCCGCCATGTACCGCTCTCTCATCACAAACTCCAGTAAAGAA ATGATGTCATTCAGCGACTTCCCCTTCCCCAAGGACACGCCCCCCTACCT GCCGTACCACCGTGTGCACACATATCTACAGGACTACGCTCAGCACTTCG ACCTGAAGAAACACATCCGATTCGGCACACAGGTCAGTCGCATAGAGAAG ACAGAAGACTTTGATGAGACTGGCCGGTGGGAGGTCCGTACTGTACAGAC GGGTTATAGCGATGGGGAACAGAAAGAGATCTTTGACGCCATCATGGGTG TGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000229 | genome | Sc0000229:26023..27756 - |
Properties
Property Name | Value |
Transcript id | BL96912_cuf1 |
Biotype | protein_coding |
|