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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96709_cuf0 >transcript:BL96709_cuf0-protein ID=transcript:BL96709_cuf0-protein|Name=transcript:BL96709_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=201bp
MEDVDVSDQDDFPELTALYQQHIQQIRNDLEESDLSDSDVRADEDNESSV
TDVSADWEENTGPTGAGSRLVPSLTVQPRRNHDAEEARDQEAGPLPDWSD
SEEESYLETPSGSPQLGHTSEEQDEQQDPEEEPHSENDEDHDEEWAPNEQ
SSQEEESLCSADNAPDTTASPGVGHKRNLRLKKDGSEDNLEKRGKEKRDP
R Run BLAST on NCBI mRNA from alignment at Sc0000016:2741957..2746938+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96709_cuf0 ID=transcript:BL96709_cuf0|Name=transcript:BL96709_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4982bp|location=Sequence derived from alignment at Sc0000016:2741957..2746938+ (Branchiostoma lanceolatum)
TGTTCAGTTGAATCAAGGAGGTTTCGACGTTCGTCGGGGGAAAACTTAGG
GCAAACAGCCCTTTGTGGCTGTGCGATTTGACCCCCCCCCCCTTCAACTA
TCAACGAACCATCCCCTGTTCGCTAAGACCCCCGCTAAATTCCCGGGTGG
AATTGTCCGATCCTGGGGTCATTAGGGGTCACATTCCGCTGGATTGTTTT
CACTTGATGTTGGGGAGATAACAGAGTGGATTCAGAGGGGGAAGTTTTCT
TTTACAAAATTCGGTAAGATTCTGCGAGGTTTGTGGTTTCTTTCTTACTT
GTATGAATGGTTTCCATTTTCAAGGGGAAGGGGGGGATCTTCTTGTGTGA
ACTGGAGCTTTCTGCGGCTGAAAATTGGACAAAAGTTTGGGACTTTCTGT
TCAAGATGTTTTTTTTGGCGGGAAAACTGAACCTCGCCAGTTTCTTTCCA
CAGAGTTTGACGAGATTTCTCGCTCTTTTTACAGCCGACAGTCCAACAGA
AGATATTGATGAACTTGATTTTGCTGCTGAACGAAACCGAAACCGTTATT
TGTTGATTTTGATTGTTTACCTGCTTGCTAAAAGCTGGGTACCGCCTTCT
TCTAATGTAAACAAAACTGTCGCACACGTGCGATTCCACGCTAGCGTGGG
GTAGAAATTATACAAAATTGATAATTAACGGGTTTTTTGATGATGTGCAA
GAGAAGTTTACTCTTATTTTTCTTCGCAATTCTTTTGTCTAAATGTAAGA
GTTATGATTACTAGTAACTGTCCAGAGAATAAGACACTTCACTTTTACAT
TATCTTCGTTTATTTTACCACGTACGTACAAGTTTGAAACTCCTCGACTT
TTATTTTAACTAGTTCAAGTTGTTGGCTGTGTGCCCTGTAATATCTTTTA
ATGTCTCCAGGTACAGACATGAAAAACAGATCATGGACCTGAGTGTGATC
TGGTGGTAAAATACTGTAAATGAATTGAATTATGCCCTTGATTGTACAGA
AATATTCATACCCAGTAATTTAAGCCCTGGTGTTACTGGACCAGTGCTGT
CTCCAGCTTATTTTTTTTGCAGTCCCACTAATTGTTTGGGAACCCATGTT
GTTAATTTTTGTTGTTAATGTTAGATCTGTCAAAATACAATTGTACATTT
TCATCAATATTATTATTTACATGTCATAAAATTTCGATTTTTTTAACGGG
TGGGGCGACATTTTTGACTGCCCCAACAAGCAAATTTTCCATCCCGGGAC
AGAGGACCGGGTCCTGGAGACAGCCCAAATAAGTTTCCTTCATTTCAGGG
TTGGAGAATTCTATAGCTACTAGTCCTACTGCCCAGGGCAAGTGAAACTC
GCTGGTTGGGCATGTGGATGTCCTCCTGATTGGGCTAGTATAATATCTTG
GACGACCTACAATAAACAAATTAAGATCATAAAAATAGCCTCATTTAAAT
ATCTTCAGCCCCAAGTCTACAAGTTTGTCTTGATTTCTTTCATGATAACC
AAACAATAAAATAATTCCCTTGCTACAAGTAAAAAAGCATAGAAAAATGT
TATTCAAACTTTGGGCAAGTGAAAAGTTAGTTCTAGAGCAAGTAGATTTC
TTATTGGGCAAGTGAAACTTAAAAATTTTGTCCAACCCTGCATTTTGTCC
CCCTACAGGTATCATCCAAAGCTGTGCCATTTTCAACACAAGTATTTGGC
AAGTCTTTTGGCGCCTCCTGAGCTATGGAAGACGTTGACGTCTCTGACCA
GGATGACTTTCCGGAGCTGACGGCTCTCTACCAGCAGCACATACAGCAGA
TCAGGAATGGTAGGTAGCAGTGTAACATTTTACTAACAAGCACCTAACTT
ACTGACCAGTCTAAGACCAGTCCAGACCTTTTAGCCCTGTGGAAGATTCA
TGGGCTCTTGAAAAACAGGTTTTTAGTGAGATCAAGCAAAGCCAAAATTG
TGGTGTGTATCTTGATTTTCTGATTTCTCGGCAAATTATGTGTGTAGCAG
TCAGGAGTAGCGACGCCGCTCGGCTAAACTTCTTAAATTCCAATTTTTCC
CCTAGTTTTTTTTCTGCAGAAATACAAAGGAAAGACCCTAAATTTGAAAA
TTTTGAGAGTGGCGCTGGGAATTTTGGGAGTGGCGCATCGCCCTTGCACC
ATTGCCTAGGGAGGGCCCTGATGGCTTTACATCACCGTCTTAGATGATGA
ATGCAATCCCTTACGACCTGTTTGCTTCTGTATGTGAAGAATTTGCACTT
GTCAAAAAGGGCTAGGGCTGCTGGGGAGTTTCCCCTGTACGAGGAACCTT
TATATACTGTACATAAAGTTTGTATTCTCTGTCATGACCAGTGGAAGAAT
AGCTTTTAACTGAGGTAAACTGGTTCGAGTTCGTTTTCAGANAAAGTTTG
TCTTCTCTGTCATGACCAGTGGAAGAATAGCTTTTAACTGAGGTAAACTG
GTTCGAGTTCGTTTTCAGATTCGATTTCTTGTCTCAATCAATGAAAAATT
GAGTGATAGTTTTTGGCCTGTCTGTGTTTCCGCACTTCTTGGTTAGCATA
ACTTAAGAACCTCGTGGTGTATTGTAATGATATTTGGTATGTCAGTAGGT
GTTGGGAAGAGGAAGGTCGTCGTTTTTAACCCCCTGCTGTGTTACCTTGA
TACTGCAGCAAAACATCCAGTTTTCGTTTCTTGTTTTTCCAGACTTGGAG
GAGAGTGACCTGTCAGACAGCGATGTGCGTGCTGACGAAGACAACGAGTC
GTCGGTTACGGACGTATCAGCTGACTGGGAAGAGAACACTGGTCCGACTG
GTGCTGGGTCCAGACTGGTCCCCAGCCTGACTGTACAGCCCCGGCGGAAC
CACGGTTTGTCTAAGGCTGTTTTATTTCTTGGTTCTGGGACAACAAACAG
AACAGATTCAAGATGGCAGACGCTGAGAAAGAGCACACAACCCCTAATAC
TAGCAATGAGATAACTGAACAGAAGCACATAACTCTTTATGACAACAAGA
ACAACTAACAATGGAAATGATGAAGTGTCCAATATGAGAATGAGGGCAGG
AAAAAAGCTTGAATCTGACCATATTTACTCCTTGAAACTTACAGCTTCAC
ACTGATAGGACACTGACTGAGTATCGTAGTAGTGGTCAGTAGGGTGATTT
GTCTGCATCTAAAATGTCATCGTTCAGTTTCTTTCAAGTTCAACTTCGAT
TACCCCCAAATAACCCAGCGAGGGGCAAAGTAGGGGGTGGGAGGAGGTCC
CGGGCTAAGGCGGGCAGGCCTCCAGCCTGGCGCGGAATGACTCAATGGTG
GGAGCCGTAACAACCGTGCCAGGCAGGGCGTTCTACTCAGGGATGGTGCG
GGGGAAGAATGAATGTTTGTATGAGTCTGTTTACCGGGCTTTAAGTGGTT
GAAATTTGAGCGTGTGGCTCCCCCGGGTGCGCCCCTGAGCTGGTTTCAGT
AGACTATCTGTGTTAATATTGATGTAGTTGCAACCCTCTTGCAGACGCAG
AAGAGGCCAGGGACCAGGAGGCGGGCCCACTTCCGGACTGGAGCGACTCC
GAGGAAGAATCGTACCTGGAGACTCCGTCGGGGTCCCCGCAGTTGGGGCA
CACAAGCGAGGAGCAGGATGAGCAACAAGGTACGGCTCCATAAGGCTTGG
AATTAACATATCAAACAGGAAAGTGGCGTCTGTGTGGCACAGTCTTGGGG
GCAAACAAGCTTTAGCTCCTAGATTAAAACAATAGGAGCTATTGTCCCCT
TTTACTTCAACCTTGTCTTGAGTTGTCTAATTTGCTTTCTATTGGACTAT
CTAAAAATATTTGTCTTCCCTTATTTGCATATCAATTCATAGTTCGTGGT
AACAAACCTGCTGTTCAACTGATCTTGCTCACAGTCACTGACGAAAAGTA
GTGGATGCTACTTGAAACGTCTGACCGTTTCCAAAATCATATCCAGTTGT
TTGAATAATTGCTTTTTTGGCGTATCTTATTATCTGGATGTCTAATCTTC
ATCGACGTGTTTGGCATAGTGGCAGAGCATCCGGCTATGTACCAATGAGA
CCCAGGTTCAATCCCCAGTGGAGTACCCAGACATGTCTGGACATGCACCC
AGACATTGTACCCTTGGGAAAGGCACTTAACACATATTTTCCCATGTCAT
AAGCTCTACAGTAGGGTTTGGGTTGGCGTTACAAATGTAGGAAGGGCATC
CAGCCGTAAAAATTCTTGCTACAAAAAAGACTTGCACTTGATGAGGAGTT
ATTGGGCTCCCACATCCATGTGCCAGCACGTCCAACCCCCATGCCATATG
ATGGGGAACAAAATACGTAAAATTGGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATTGCTT
TTAAAAGTTTCAATAGAAGCATAAGGCCAATTCTTCTTTACCGATTTCTC
AGCAAAATATGTGTCACATTTTTTTAGAGAGGACGTACCTCTGGCCGAAA
TGTTGTTTGCAATGTTACACCTATGAGTTTTATCCGAGGCATGATGTTTG
CAGGCGATCAATGCAGGCGGTATGTTGTTGATTTCTTTTGTTTTTGAGTC
ATTTGCATCTGAATGTCACAGTGTCCACCCAACACGGAAAACCAACCCGA
AAACTCATTTTTGGCAGCTTTTTGTAATTGCTCAGTAGGTAAGAATTCAA
CTGCAAGAATATGTGCTTTTGCACCATGAATTATTTTTCTCTCCATGTGT
AACCCAACTAGATCCAGAAGAAGAGCCCCACAGTGAGAATGATGAGGATC
ACGACGAGGAATGGGCTCCAAACGAACAGTCCTCACAGGAAGAAGAGTCT
TTGTGTTCGGCTGACAATGCGCCAGACACCACAGCGAGTCCTGGAGTTGG
GCACAAGCGAAACTTGAGGCTTAAGAAGGACGGTTCAGAGGACAATCTTG
AGAAGAGAGGGAAAGAGAAACGGGACCCAAGG Coding sequence (CDS) from alignment at Sc0000016:2741957..2746938+ >transcript:BL96709_cuf0 ID=transcript:BL96709_cuf0|Name=transcript:BL96709_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2412bp|location=Sequence derived from alignment at Sc0000016:2741957..2746938+ (Branchiostoma lanceolatum)
ATGGAAGACGTTGACGTCTCTGACCAGGATGACTTTCCGGAGCTGACGGC
TCTCTACCAGCAGCACATACAGCAGATCAGGAATGACTTGGAGGAGAGTG
ACCTGTCAGACAGCGATGTGCGTGCTGACGAAGACAACGAGTCGTCGGTT
ACGGACGTATCAGCTGACTGGGAAGAGAACACTGGTCCGACTGGTGCTGG
GTCCAGACTGGTCCCCAGCCTGACTGTACAGCCCCGGCGGAACCACGACG
CAGAAGAGGCCAGGGACCAGGAGGCGGGCCCACTTCCGGACTGGAGCGAC
TCCGAGGAAGAATCGTACCTGGAGACTCCGTCGGGGTCCCCGCAGTTGGG
GCACACAAGCGAGGAGCAGGATGAGCAACAAGATCCAGAAGAAGAGCCCC
ACAGTGAGAATGATGAGGATCACGACGAGGAATGGGCTCCAAACGAACAG
TCCTCACAGGAAGAAGAGTCTTTGTGTTCGGCTGACAATGCGCCAGACAC
CACAGCGAGTCCTGGAGTTGGGCACAAGCGAAACTTGAGGCTTAAGAAGG
ACGGTTCAGAGGACAATCTTGAGAAGAGAGGGAAAGAGAAACGGGACCCA
AGGATGGAAGACGTTGACGTCTCTGACCAGGATGACTTTCCGGAGCTGAC
GGCTCTCTACCAGCAGCACATACAGCAGATCAGGAATGACTTGGAGGAGA
GTGACCTGTCAGACAGCGATGTGCGTGCTGACGAAGACAACGAGTCGTCG
GTTACGGACGTATCAGCTGACTGGGAAGAGAACACTGGTCCGACTGGTGC
TGGGTCCAGACTGGTCCCCAGCCTGACTGTACAGCCCCGGCGGAACCACG
ACGCAGAAGAGGCCAGGGACCAGGAGGCGGGCCCACTTCCGGACTGGAGC
GACTCCGAGGAAGAATCGTACCTGGAGACTCCGTCGGGGTCCCCGCAGTT
GGGGCACACAAGCGAGGAGCAGGATGAGCAACAAGATCCAGAAGAAGAGC
CCCACAGTGAGAATGATGAGGATCACGACGAGGAATGGGCTCCAAACGAA
CAGTCCTCACAGGAAGAAGAGTCTTTGTGTTCGGCTGACAATGCGCCAGA
CACCACAGCGAGTCCTGGAGTTGGGCACAAGCGAAACTTGAGGCTTAAGA
AGGACGGTTCAGAGGACAATCTTGAGAAGAGAGGGAAAGAGAAACGGGAC
CCAAGGATGGAAGACGTTGACGTCTCTGACCAGGATGACTTTCCGGAGCT
GACGGCTCTCTACCAGCAGCACATACAGCAGATCAGGAATGACTTGGAGG
AGAGTGACCTGTCAGACAGCGATGTGCGTGCTGACGAAGACAACGAGTCG
TCGGTTACGGACGTATCAGCTGACTGGGAAGAGAACACTGGTCCGACTGG
TGCTGGGTCCAGACTGGTCCCCAGCCTGACTGTACAGCCCCGGCGGAACC
ACGACGCAGAAGAGGCCAGGGACCAGGAGGCGGGCCCACTTCCGGACTGG
AGCGACTCCGAGGAAGAATCGTACCTGGAGACTCCGTCGGGGTCCCCGCA
GTTGGGGCACACAAGCGAGGAGCAGGATGAGCAACAAGATCCAGAAGAAG
AGCCCCACAGTGAGAATGATGAGGATCACGACGAGGAATGGGCTCCAAAC
GAACAGTCCTCACAGGAAGAAGAGTCTTTGTGTTCGGCTGACAATGCGCC
AGACACCACAGCGAGTCCTGGAGTTGGGCACAAGCGAAACTTGAGGCTTA
AGAAGGACGGTTCAGAGGACAATCTTGAGAAGAGAGGGAAAGAGAAACGG
GACCCAAGGATGGAAGACGTTGACGTCTCTGACCAGGATGACTTTCCGGA
GCTGACGGCTCTCTACCAGCAGCACATACAGCAGATCAGGAATGACTTGG
AGGAGAGTGACCTGTCAGACAGCGATGTGCGTGCTGACGAAGACAACGAG
TCGTCGGTTACGGACGTATCAGCTGACTGGGAAGAGAACACTGGTCCGAC
TGGTGCTGGGTCCAGACTGGTCCCCAGCCTGACTGTACAGCCCCGGCGGA
ACCACGACGCAGAAGAGGCCAGGGACCAGGAGGCGGGCCCACTTCCGGAC
TGGAGCGACTCCGAGGAAGAATCGTACCTGGAGACTCCGTCGGGGTCCCC
GCAGTTGGGGCACACAAGCGAGGAGCAGGATGAGCAACAAGATCCAGAAG
AAGAGCCCCACAGTGAGAATGATGAGGATCACGACGAGGAATGGGCTCCA
AACGAACAGTCCTCACAGGAAGAAGAGTCTTTGTGTTCGGCTGACAATGC
GCCAGACACCACAGCGAGTCCTGGAGTTGGGCACAAGCGAAACTTGAGGC
TTAAGAAGGACGGTTCAGAGGACAATCTTGAGAAGAGAGGGAAAGAGAAA
CGGGACCCAAGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000016 | genome | Sc0000016:2741957..2746938 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96709_cuf0 |
| Biotype | protein_coding |
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