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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96706_cuf5 >transcript:BL96706_cuf5-protein ID=transcript:BL96706_cuf5-protein|Name=transcript:BL96706_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=250bp
MALGPCTVLIAAHRTSLTHTKQSLGSTQHMANTFLLFLMAVVALSALSMG
EQVYLTTVDGWKFYKVRARGYMTRANVRATCEAAGMEFPCWSSGFSTACD
GIYWGPECIRFDDGGVHCTTFGVLAHKLTGHPAFACCQQLDDTFVYLATT
NIVDSIDSTSGIDADTCSWALLGGYFSNKYALCADRNECLDSPCEHGSCT
DTIGGYTCRCSNGWGGTNCNQDVDECSSNPCLHYGTCQNLANGYRCHCKP Run BLAST on NCBI mRNA from alignment at Sc0000016:2097901..2101657- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96706_cuf5 ID=transcript:BL96706_cuf5|Name=transcript:BL96706_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=3757bp|location=Sequence derived from alignment at Sc0000016:2097901..2101657- (Branchiostoma lanceolatum)
CCATGGCCTTGGGACCGTGCACAGTATTAATTGCCGCGCACAGAACAAGC
CTCACACACACTAAACAGAGTCTGGGCTCAACTCAACATATGGCAAATAC
GTTTCTTCTGTTCTTGATGGCTGTGGTCGCCTTGTCAGCCCTTTCCATGG
GTAAGTAGAGAAGTAGTTTTTTTTTGTATTCATTCAAAATGTAAAAAAAA
GTAACTACATTGGCGAAAATGAAGCACATTGTGTTTGGCACAAATATGAG
GTGTATGGCATTGAAGGGCTACATCTCATATACATAATAATAATTAAGAA
CATACCTTCAAACACCCGAACGGGGTCATTTTTTACCCCAGGCATGGATT
TTGATGTGCCATTTGACCATGTTTGATCGGAAAAGAAATTTCTTCCGTGA
CTTTGTCAGTAGACGTCTATTCAAAGCTCTCCTAATTTCTAGAGAGATTG
GCACAATACTGTTGACATTATAGAAGAAAGTCTGTCGAGTCCGACTGGGG
TCATTTTTATAAATAATGTGCTGTTTTTGAGACCTGCCCTCTGTAACTCC
TTAACTACTTGTTGTATGACCACCAAATTTCTGAGGATAATTCACATGTC
AATTAGTATTACCATGATAAATTTTGTGTACAACAAAGCCTCGAAACGTC
ATTGGTTGAACTAAAATTAGCAGAATTTGTTAGATATGCCTGTCAAAAAC
CCATTGCCATGGCAACACGAAAAACGATGTTAAGGATATTTTCTGAAAAG
TCACCAAGATTGGTGGCTCTAGCGTGAGCCGCTAAGGAGTTACGCACGCA
ACATGAAATTTGGCGTGGGCCTCAAACTGAATCCCCTCACGGTCTAAATA
GGGAGAGTTCAAAACGTTGTCTTTCTGATATTTTTGCATAAATTGTGATA
ATGAACGGGAGTTGTTCATACCTAAACATGCCAAAACATTCCTCTTACAT
TGATGAAGCAATGTACGGATAACAATCAGCGAAAAAAGAAAAAAAAGGGA
GATTTTACTAAACAAAACATTTTGGAGTCATTTTTGACCCAGTTGAGTCA
TTTTAGTCGTAAAAAAGGTTCGGGTGTTTGTGGGTTAAGCAATACGGTTT
GTTTATTGTCATGTCTAGGCAAGTCTTCAGAAATATTTTCTTCTGCCAAT
CAGGAATCGTTTTTATGTCAATAGATGGTAATATTTTGCATCTAATAATG
TAGACTATTAGATGCAAATCTAGATGTTGATTAAATCCTTCTCTGTTTTA
GGTGAGCAAGTGTATCTGACCACGGTCGATGGATGGAAATTTTATAAAGT
TCGTGCACGGGGTTATATGACCCGTGCAAACGTCAGAGCCACGTGTGAAG
CGGCGGGCATGGAGTTTCCATGTTGGTCCTCCGGCTTTTCCACTGCGTGT
GACGGCATCTACTGGGGCCCAGAATGCATCCGTTTTGACGACGGCGGCGT
CCACTGTACTACCTTTGGTGTCCTCGCGCATAAACTGACTGGTCACCCAG
CCTTCGCGTGCTGCCAGCAGCTGGATGACACCTTCGTGTACCTTGCTACA
ACTAACATCGTCGACAGTATTGACAGCACTTCTGGTATAGACGCCGACAC
ATGCAGCTGGGCATTGTTAGGGGGATACTTCTCCAACAAATACGCTCTGT
GTGCAGGTAATTAGTGTTGTGAAAAATACAGGCTTGGTTCATTTACCTTC
ATCATATTGTAGACCAGTTTCATTGGGGCATTTAGGGAACAATTTACAGC
CAAACCTGGTAAGGCGACCACTTTCCCAAGGCAACCAACTGCCCAAGGGC
AAGGGGGCTTCCTCTCTGTCTCTTGGCATTTTTCCAATAGACACAGGCAT
CAAGAAGGACCACCTGGTTAACGCGACCGCAATGAGCACGGTTATCATCT
TTTTTTATTAAGCAGCAGAAGAATATACAGGACACTCTAGCTATAGCTAA
TATTAAACATCACCTCTGGAAATAAAAATTACAACTACATAGACAAGTAC
AATAACAATAAGAAACAGCAATTGCGCCGTCCAATACAAACAAACTATCA
AACAAACAGTGAATATATGAACACACCTGAACTAAGTTTTAAAACGTTTG
CTTGTCGCAATATAGTGCTGAGTCAAGCCTAAAATGTTACAATTGAAATC
ATACGAAACAAAGGATGAGCCTCTTAATAACAAATAAATAAAGGCTTGAT
CAGATAAAATATCAATATCAAGTATGGGGGCTAAAAGGTTCCGTAGGTTG
CCCAGAAGGTTGAGTCTTTGTTGACTGTATATAGGGCAGTACAAAAGATA
ATGGACAACGCTTTCGCTTCGACATCCACAAATGCAGGCTTGACTTGTTA
CTAAATTACGTGTAAATAAACTTTGGTTAAGACTGCACGTGCCGGTGCGA
AGGTAATTAGTGTTGCAGGTGAGAAGACGTGTGAGGAGGGCGCAAGTGTA
CCGGGGGCCATGACTAAAATGTAAGTAGAAAGAGTTTGGTTTGGCGACCG
CAAGTTCCTTTTTCAATACCTAAAATGACTGAGCTATTCGCCAGTTTGCG
TCCACGGTACTTTTTTTGCAATAAATGGAAGGAAAACGCGGTGAATTGCT
TCCACTTTGCTTTTATGTCTGCTTCATTTCGCAATTTCTCCGCCCGCTCG
GAAGTAGGCCGCGTAACGTACAACATCAAGTCGTTCCCACCCCTAGTCCG
GCGGAAACCTGTCTATCGAGACTACCTGTCTGTGTATGTACAGTAGCCCT
TGTCTACTAAAAGTGAGCAATCACTTTTGCTCAGTCCCTTGACTGGTCAA
ATTAGGCAATCATTCACCTCGGTGCAAGCTTTCCGACGCAGATCTAGACG
ATGGCCAGAAAAAGGAAGAAAGTGAAATAAAAAGATTTTAATGGATTTGC
TGCAGCTGGTAGGTCTGTCTACATATCAATTAAAATCTAGCTTTTTTTTA
TGAAACATATTTTAGAACCAAGGTTTCACCTCTTTGTCGCGCCTCCATGC
GTGTAAAACAACCTTCTAACGTATTCCGATACGTCTCCAATGAACAATAA
GCAAGTACTATTTCTAGAAATAAGTTTTTTCTTCCTTTGGGCCTTGAGTT
TGAAAATTAAAAATTTTCATCTGGAAAACTTGATGTGTTATGTACCTGAC
AGATGTATAAAACAGGTCTATAGAAAAAAAAGCGATTGTAATTGACACTA
CTCCCTTTGTTTCTCCAGATCGAAATGAGTGCCTAGACTCCCCATGTGAA
CACGGAAGCTGTACAGACACAATCGGCGGCTACACCTGCAGGTGCAGCAA
CGGATGGGGAGGTACCAACTGTAATCAAGGTAGGGAGAGTTGCGTGGAAA
GATGTAAAAATCCTAGAGAATTAAGTTGCTGATTTTATCATAATAACGTT
ACTTGTAATATCATTGTTCTTGTAAATTCATTGTTATGTAATTTCTGCTA
CAACTTATTATAAGGTACAATTGAGCTACTGCAGAGGAAAAAGCAGAACC
ACGCGCGGCCAACTCAAATAAATCCCAACAAAGTCCTTTGGATTTACGGT
TTACAATAACGTTGCAAGAAGGCAAAGTAGGGTTTGCCTAGCAACCATCA
TCACAATGTGACAGCCACTCTACGGGTACTGTATTGCAAAAGATCAGAGT
CCAAACGTGTCTCGTTACAGACGTCGACGAGTGTTCCAGCAATCCATGCC
TTCACTACGGGACCTGCCAGAACCTGGCGAACGGCTACAGGTGTCACTGT
AAGCCTG Coding sequence (CDS) from alignment at Sc0000016:2097901..2101657- >transcript:BL96706_cuf5 ID=transcript:BL96706_cuf5|Name=transcript:BL96706_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=3000bp|location=Sequence derived from alignment at Sc0000016:2097901..2101657- (Branchiostoma lanceolatum)
ATGGCCTTGGGACCGTGCACAGTATTAATTGCCGCGCACAGAACAAGCCT
CACACACACTAAACAGAGTCTGGGCTCAACTCAACATATGGCAAATACGT
TTCTTCTGTTCTTGATGGCTGTGGTCGCCTTGTCAGCCCTTTCCATGGGT
GAGCAAGTGTATCTGACCACGGTCGATGGATGGAAATTTTATAAAGTTCG
TGCACGGGGTTATATGACCCGTGCAAACGTCAGAGCCACGTGTGAAGCGG
CGGGCATGGAGTTTCCATGTTGGTCCTCCGGCTTTTCCACTGCGTGTGAC
GGCATCTACTGGGGCCCAGAATGCATCCGTTTTGACGACGGCGGCGTCCA
CTGTACTACCTTTGGTGTCCTCGCGCATAAACTGACTGGTCACCCAGCCT
TCGCGTGCTGCCAGCAGCTGGATGACACCTTCGTGTACCTTGCTACAACT
AACATCGTCGACAGTATTGACAGCACTTCTGGTATAGACGCCGACACATG
CAGCTGGGCATTGTTAGGGGGATACTTCTCCAACAAATACGCTCTGTGTG
CAGATCGAAATGAGTGCCTAGACTCCCCATGTGAACACGGAAGCTGTACA
GACACAATCGGCGGCTACACCTGCAGGTGCAGCAACGGATGGGGAGGTAC
CAACTGTAATCAAGACGTCGACGAGTGTTCCAGCAATCCATGCCTTCACT
ACGGGACCTGCCAGAACCTGGCGAACGGCTACAGGTGTCACTGTAAGCCT
ATGGCCTTGGGACCGTGCACAGTATTAATTGCCGCGCACAGAACAAGCCT
CACACACACTAAACAGAGTCTGGGCTCAACTCAACATATGGCAAATACGT
TTCTTCTGTTCTTGATGGCTGTGGTCGCCTTGTCAGCCCTTTCCATGGGT
GAGCAAGTGTATCTGACCACGGTCGATGGATGGAAATTTTATAAAGTTCG
TGCACGGGGTTATATGACCCGTGCAAACGTCAGAGCCACGTGTGAAGCGG
CGGGCATGGAGTTTCCATGTTGGTCCTCCGGCTTTTCCACTGCGTGTGAC
GGCATCTACTGGGGCCCAGAATGCATCCGTTTTGACGACGGCGGCGTCCA
CTGTACTACCTTTGGTGTCCTCGCGCATAAACTGACTGGTCACCCAGCCT
TCGCGTGCTGCCAGCAGCTGGATGACACCTTCGTGTACCTTGCTACAACT
AACATCGTCGACAGTATTGACAGCACTTCTGGTATAGACGCCGACACATG
CAGCTGGGCATTGTTAGGGGGATACTTCTCCAACAAATACGCTCTGTGTG
CAGATCGAAATGAGTGCCTAGACTCCCCATGTGAACACGGAAGCTGTACA
GACACAATCGGCGGCTACACCTGCAGGTGCAGCAACGGATGGGGAGGTAC
CAACTGTAATCAAGACGTCGACGAGTGTTCCAGCAATCCATGCCTTCACT
ACGGGACCTGCCAGAACCTGGCGAACGGCTACAGGTGTCACTGTAAGCCT
ATGGCCTTGGGACCGTGCACAGTATTAATTGCCGCGCACAGAACAAGCCT
CACACACACTAAACAGAGTCTGGGCTCAACTCAACATATGGCAAATACGT
TTCTTCTGTTCTTGATGGCTGTGGTCGCCTTGTCAGCCCTTTCCATGGGT
GAGCAAGTGTATCTGACCACGGTCGATGGATGGAAATTTTATAAAGTTCG
TGCACGGGGTTATATGACCCGTGCAAACGTCAGAGCCACGTGTGAAGCGG
CGGGCATGGAGTTTCCATGTTGGTCCTCCGGCTTTTCCACTGCGTGTGAC
GGCATCTACTGGGGCCCAGAATGCATCCGTTTTGACGACGGCGGCGTCCA
CTGTACTACCTTTGGTGTCCTCGCGCATAAACTGACTGGTCACCCAGCCT
TCGCGTGCTGCCAGCAGCTGGATGACACCTTCGTGTACCTTGCTACAACT
AACATCGTCGACAGTATTGACAGCACTTCTGGTATAGACGCCGACACATG
CAGCTGGGCATTGTTAGGGGGATACTTCTCCAACAAATACGCTCTGTGTG
CAGATCGAAATGAGTGCCTAGACTCCCCATGTGAACACGGAAGCTGTACA
GACACAATCGGCGGCTACACCTGCAGGTGCAGCAACGGATGGGGAGGTAC
CAACTGTAATCAAGACGTCGACGAGTGTTCCAGCAATCCATGCCTTCACT
ACGGGACCTGCCAGAACCTGGCGAACGGCTACAGGTGTCACTGTAAGCCT
ATGGCCTTGGGACCGTGCACAGTATTAATTGCCGCGCACAGAACAAGCCT
CACACACACTAAACAGAGTCTGGGCTCAACTCAACATATGGCAAATACGT
TTCTTCTGTTCTTGATGGCTGTGGTCGCCTTGTCAGCCCTTTCCATGGGT
GAGCAAGTGTATCTGACCACGGTCGATGGATGGAAATTTTATAAAGTTCG
TGCACGGGGTTATATGACCCGTGCAAACGTCAGAGCCACGTGTGAAGCGG
CGGGCATGGAGTTTCCATGTTGGTCCTCCGGCTTTTCCACTGCGTGTGAC
GGCATCTACTGGGGCCCAGAATGCATCCGTTTTGACGACGGCGGCGTCCA
CTGTACTACCTTTGGTGTCCTCGCGCATAAACTGACTGGTCACCCAGCCT
TCGCGTGCTGCCAGCAGCTGGATGACACCTTCGTGTACCTTGCTACAACT
AACATCGTCGACAGTATTGACAGCACTTCTGGTATAGACGCCGACACATG
CAGCTGGGCATTGTTAGGGGGATACTTCTCCAACAAATACGCTCTGTGTG
CAGATCGAAATGAGTGCCTAGACTCCCCATGTGAACACGGAAGCTGTACA
GACACAATCGGCGGCTACACCTGCAGGTGCAGCAACGGATGGGGAGGTAC
CAACTGTAATCAAGACGTCGACGAGTGTTCCAGCAATCCATGCCTTCACT
ACGGGACCTGCCAGAACCTGGCGAACGGCTACAGGTGTCACTGTAAGCCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000016 | genome | Sc0000016:2097901..2101657 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96706_cuf5 |
| Biotype | protein_coding |
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