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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96700_cuf17 >transcript:BL96700_cuf17-protein ID=transcript:BL96700_cuf17-protein|Name=transcript:BL96700_cuf17|organism=Branchiostoma lanceolatum|type=polypeptide|length=141bp
MALPKAGYVAKPYISIGCWRDTGTRAIPTLEGKDKRLDGSYTSRTEAIEK
CYQVAKSRGFRIFAVQNGGWCAGSAYAYRTYRKYGASASCKKDGEGGAWA
NEVYLISGIVVFCLDLENRIFFLVPFIPHAYNEFICIINKS Run BLAST on NCBI mRNA from alignment at Sc0000016:472600..479906- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96700_cuf17 ID=transcript:BL96700_cuf17|Name=transcript:BL96700_cuf17|organism=Branchiostoma lanceolatum|type=mRNA|length=7307bp|location=Sequence derived from alignment at Sc0000016:472600..479906- (Branchiostoma lanceolatum)
TAGGTGGCCAAGTCTCGTGGGTTCTCCGTCTTTGCTGTTCAACATGGCGG
CCAGTGTTTCGGCTCTGCTACTGGTCTCGGCACCTACCGGAAGCACGGAC
GCACGACGACATGCAATGCCAATGGAAAGGGGGCGTCATCGGCCAACGAA
GTCTACCTGATTCCAACAGGTAAGGTGGAACATCCTTTGGAACATGGGAA
CCATAATATCAGAACAACACTAATGCCTCTGTATTCAATGACAAGACTAT
ATGCTTAACATTTTACGACAAGATTATCAGAGATATCAGACTTTGTCGAT
TTACCCGTTTTGTTTTCTTACCCTTCCAACCCGGCTGTCAAATAGCAATA
CTTATAATTAGCTTATGTCTAAGCTACAATTAGCAGTAAAAAGCAAACAC
AAAGAAAAAGACAAACAAACAAACATACATATTAACAAACATCATGCAAT
ACTTCACTCCTTTGAGTTCAACGAGATGGGAAGATTTGGGACTATGAAGT
AAATTTCCATGTTACATAACTATAACGTAGAATTCTTTGATCATAATGTT
TAAAATTTGAAAGTCTAGACATGAATATCAAAACATGTTATAAACTATGT
GTCCGAAAACTTGTTAATGATGCCTTTCAACATCTCCTGTATTTTTCCAG
GCGCCCCTATGGCCTTGCCTAAGGGTAAGTCATTTTTTCCTCTTTTCTCT
CCTTGACAGATTATTTCACATTAACGTTTCCTGTGGTTTCAATCATTGAG
CCTGTTTTTTTTAATCAAACATGAATAAATGCCAAAGTCGCTTGCTCATA
GACAACGCGACCCAGCCTAAAGCATAATATGGTTGTTTGATTGACGCTGT
GTATGTTTCCACAGGATATGTGGCCAAGCCTTACATCAGTATTGGCTGTT
GGAGGGACACGGGAACCCGCGCCATTCCCACTCTGGAGGGGAAAGACAAA
CGTTTAGACGGCAGCTATACCACACGCACAGAAGCCATCGAAAAGTGCTA
CCAGGTGGCCAAGTCGCGTGGCTTCCGTATCTTTGCGGTCCAAAATGGCG
GCTGGTGTGCCGGATCTGCCTACGCCTACCGAACCTACAGGAAGTACGGA
GCATCAGCATCCTGTAAGAAAGACGGGGAAGGAGGAGCCTGGGCAAATGA
AGTTTATCTCATCTCAGGTATTGTAGCTTTCTGCCTGGAATTAGAAAGTG
CTTATTTTTTACTTGTTTGTACTTGCATACAGTTCTCTCATGCGTATGAG
AACCTTATTTAATACATAATCATGAGATGTCACTAGACATTTTATCATGA
TTTGACGAAGGAGTGAGATCGTGGAACCCTAACTTTTACATCTGTGTCGT
TTGGATTTAAACTATCCACATTATCTCCATACAACTATCTACTACATTTT
TTTTTTACTAAAGATGTTATTTTGTCTTTCAGATGTTGTTAGCGCAAACA
AAGGAGGTGAGTAGGCCAATTTAGTTGTCTTCAGACATCATGTTAAATAA
TGTACGAATAGATAACGCTGCCCTCCAACATACATATTTTAATACGTTTA
CGTCCCTATGTATTTTGAGCATATGCCGTGTTATTTATGTTAAAAAAGCA
ATATCAGCAAGAAATCTGAGTAGACTCCGTAAACAGCCGATTCTGTTACA
CTTTAAGACTTGTCTTTTTTTCATTTTTATCGACCAGAAAAATGCCAGGA
TCAGGAGGACAAAGGAGCATCCTACCGAGGAACAGTTGCTGTGACCAGAA
GTGGCAAGACGTGTCAGCGCTGGGACGGCCAGACGCCTCAGAAGCACGAC
AACACACCTGAGAAATATCCGTTATCTGGCCTGGGTCAGAACTACTGCCG
GAATCCGGACGGCAAGAGCGGAGTTTGGTGCTACACCACGGACCCCGGCA
CGGAGTTTGAGTTTTGTGACGTGCCAGTCTGTGGTAAGGTTTGCGTTCTT
TTATCGTAGGAAAGCCTGCGGCTTTAAATCTTTAAAAAGAGCGGGTTTTC
GTAGCTTTCGTGTTCTCCCCTTTTTAACTATATCTACTACTGATATCTAC
TTAATAATATGTATTCATTATGTTAAAGTTTTTACACATTTAAACATTTT
AATTACTATTGTTTGATTACTTGTTAGGTAACTTGTGGGACCAAACCATG
TTGGGGATGGGGGAAAATGTACCAGGTGGAGACGTCTCAAAAGACACTTT
GTCATGTCTGTAGTGTCTAAACCATTGAACTAAATGCTTTCTATTTATCA
GCTGGATACTTTAGTGAGGGGTTTTGTCCAACTGTTTACTCCATCTACGT
GATATGCACGTATTTAAGCTGTACTTACAATGATCTGATTCTCGTCACTA
CAGCCGGACCAGAGTACATCAGCCTGGGTTGCTGGAAAGACAGCAGCAAT
CGAGCCATTCCCCTGCTGGAGGGAACAGACGACCGGCTTGACGGGAAATT
CCGCGCCCGTGATGACGCCATTGAGAAGTGCTACCAGGTACACTAACATT
TATTCATTCTAGCAGACGCAGATATGACTCCAGCTGAGCCATTTCTGTTA
GTGGGATCAATGAAAATATGAAATTCAAAAAAAAGGTAATTTGCTATTTG
AAACTTAAAGCATTGTAACACGTTCTGGTATTAGTTGAGTGGTTATAATT
AGGGACTGAAAAAAGTTGTATGTCGAAATATGACTGAGGTAACTGTTTTC
ACCTATAGGTCGCCAAATCTCGCGGGTTCTTCATCTTTGCTGTCCAATAT
GGCGGTCAGTGTTTCGGTAGCGGCTCTACTACTGCTCTCGCCAACTACCG
GAGGTACGGACCCTCTTCGGCATGTAAGAAGGACGGGGAAGGAGGATACT
ATGCGAACGAAGTCTACATGATTACAGGTAAGGTGGAACATCCATTGGAA
CATATGGAGAGCAGAACATAACCTTAATCCTCCCTCTCACTGGACCCGCG
GCGTCGCTGCGTCCTAAACTGGATTTGTGTTTCCCTTGACTTTATAAAGG
GAATACTATTCAAGACGTACAAGTATGACCAAGAGGACAACAAAACACAT
AAAGCTTAAAAAGATTCTTTTTTTGTCGATGAAATTCGTTGATTACTTTG
TCAATTCGATCGGCCACAGCGACGCCGCCATCGTGCCGAAGGTCCAGTAA
GAGGGGGGCTTTAAAAAAAGTGCTTCTTTACATAGACGTATCATTAAATA
TTGTACTTCAAGAACGTCAGAGATAGCATACCTCAAACCATTACCCATAT
TGCCTTGTGACCATTGTTTGGAGGTAAAAAAGATACACTTAATCAGCAAA
ACGGCAATCTAAAAGAAATGTTCCTTTGGTTTGAAATGATAACTTATTAG
AGTATTTTTAAGATCCTTGTGAGTAATTCTGGTCAACTTTTCTTGTATTT
TTTTTCCAGGTGCAACCAAAACTTTGCCTCCCGGTAAGTCATTTTACACA
ATTTGTCTTGCGATATTACATTAACTTTCTCCTTGTAAATTCAATCATTG
AGCCGTGCTGTATCTAGCATATCAAAATTCCAGTGCCAAATGGCCTAATC
TCAAACGTCTCATTGGTAAGTAAACATTGTACATTTTTTCAAAGGATTTG
TAGCTAAGCCGTACTACAGCGTTGGCTGTTGGAGGGACACGGGGAATCGC
GCCATTCCGACTCTGGAAGGGAAAGACAAACGTTTAGATGGCACCTATAC
CGTTCGCGTCGACGCCATCGAGAAGTGCTACCAGGTGGCCAAGTCGCTTG
GCTTCCGAGCCTTCGCGGTCCAACATGGCGGGTGGTGTGCCGGATCGGCT
ACTGCCCACAAAACCTACAAGAAGTACGGACCCTACACAACGTGCAGTTA
CAACGGGAGAGGGGGAGCCTGGGGCAATGAGGTTTATCTCATATCAGGTA
TTCTGCCTTTTATCTGGATTTTTTCTGGTCATGTGCATTTTAATTCAACG
CATAGGATTATATGATGGCTCGTTTGTGAAAGTTAGACATCCAGGAAAAC
AGAATATAAGGAGAATTCTTACATGATGGCTCGTTACATTTTAATGAAGA
ATGCTTTGCAAAACATCTCCTTCATATTGTTATCATTGTCTAGCTTTTTA
AAGCTATAATATTGTTGTACATTTTTTGTTTTATTTTGTACATTTTTGTT
TTATACATTTGTTGTATAATATTGTTATTCTGTCTTTCAGATCGTTTAAA
CCCAAAGAAAGGAGGTGAGTAGGCAGGTTTGACATATATGCAACTATTGT
AATACGTCTTATTTCAATACGTCTTATTTCAATACATCTTATGCATGACT
GTGTGATTTGCCATGTAAAACCGGTTTTTCTAGTTATTGTAAATAAGGAC
TGGTTAGTTCTGCTAGTTCATTTTAGTGACGCTGAAGAAGAGTGATGGAT
GTCACTCGAAACGTCCGGAAATAAATCTCCGAATTCGAATCCAGTTGTAG
AGTTTGAATTCTCTTTATATATTTGTTACCTGGATCTCTAACCTTCACAA
ACGTAACTATTGTAATACATCACTGAATATTGCGTTACGCTCCTCGCTAG
CATGACTGTTTTCTGTCTGTACGTCCTAAAAAAAGTCCCATACGTTTTAA
AACAGTCTACGTCAGGCTTATCGCGTTATGGTTGTGTAGAAAACGTAAGA
TGCAAGAAATCAAAATAGATTCCTCGATTCAAATGACGAATCTAAAGTCG
AACGATCGCAGAACATATTTTGGTACTGGGTAGGTAGAACCAAGCACCAT
AGTGCTATAGACTGATCTAAGTACACACTATGCCACACTTCTGCGCTACT
AAACATTTACAAGCATCCCACTGTATTAGGTCACAGATTGTTTGTCATTC
TTTCTGTTATTCAGGCTGACATTGAAACAATGCCATCAGTTACAATGCCA
TCAGGTGCGTACCTTTTTTGGCTTTGATGATAATAATTCATCAAAGAAAC
AGTTAAACATTTTCTTATATTTTGCCAGGGGGAGAGGTTGCAAAATTCCA
AGGTCCAAAGTACATCAGCCTGGGTTGCTGGAAAGACAGCACCTCCAATC
GGGCCATCCCAACCCTGGAGAAAACAGACGAACGGCTGGACGGGACTTAC
AGCAAACGTGCTGACGCCATCGAGAAGTGCTACCAGGTACATTCAAGTTT
GCTTGTTACAACAGACGTAAACATNAACAGACGAACGGTTGGACGGGACT
TACAGCAAACGTGCTGACGCCATCGAGAAGTGCTACCAGGTACATTCAAG
TTTGCTTGTTACAACAGACGTAAACATATCTCTAACTGACACTTTTCAGT
GGGAGGTTGAAACGGTGACGAAATGTACGTAATTGAAGTCATATACATAG
AATCGTAAATTTTATAAGATTATTACTTGAAGAATTAAATGAGGACTTAA
CTTAAACTGCAAATGCCAACATGCAAACAAAATAATAGACTTACCTTTGG
CATTGCGTAAAATCAACATAGAATAATCTATACTGATATTGTCTAGTAAA
TTTACCACATGAAATCGTCAAACACGAAAACAATGGAGCTCACACTATCT
GTAAAATAGTTAGTTAGTAACGAAGGAAAAATTTTGAGGAACAAATCGTA
TATCATTGGTCCTATAAGTAACAAACCGTGCCCTTATAGGTGGCCAAGTC
TCGTGGGTTCTCCGTCTTTGCTGTTCAACATGGCGGCCAGTGTTTCGGCT
CTGCTACTGGTCTCGGCACCTACCGGAAGCACGGACGCACGACGACATGT
AATGCCAATGGAAAGGGGGCGTCATCGGCCAACGAAGTCTACCTGATTCC
AACAGGTAAGGTGGAACATCCTTTGGAACATGGGAACCATAATATCAGAA
CAACACTAATGCCTCTGTATTCAATGACAAGACTATATGCTTAACATTTT
ACGACAAGATTATCAGAGATATCAGACTTTGTCGATTTACCCGTTTTGTT
TTCTTACCCTTCCAACCCGGCTGTCAAATAGCAATACTTATAATTAGCTN
AGCAATGCTTATAATAAGCTGATGTCTAAGCTACAATTAGCAGTAAAAAG
CAAACACAAAGAAAAAGACAAACAAACAAACATACATATTAACAAACATC
ATGCAATACTTCACTCCTTTGAGTTAAACGAGATGGGAAGATTTAGGACC
ATGAAGTAAATTNTTTCCATGGTACATAACTATAACGTAGAATTCTTTGA
TCATAATGTTTAAAATTTGAAAGTCTAGACATGAATATCAAAACATGTTN
AAAGTATAGACATGAATATCAAAACATGTTATAAACTATGTGTCCGAAAA
CTTGTTAATGATGCCTTTCAACATCTCCTGTATTTTTCCAGGCGCCCCTA
TGGCCTTGCCTAAGGGTAAGTCATTTTTTCCTCTTTTCTCTCCTTGACAG
ATTATTTCACATTAACGTTTCCTGTGGTTTCAATCATTGAGCCTGTTTTT
TTTAATCAAACATGAATAAATGCCAAAGNAACAAGTTATAAACTATGTGT
CCGAAAACTTGTTAATGATGCCTTTCAACATCTCCTGTATTTTTCCAGGC
GCCCCTATGGCCTTGCCTAAGGGTAAGTCATTTTTCATCTTTGCTCTCCT
TGACAGATTATTTCACATTTACGTTTCCTGTGGTTTCAATCATTGAGCCT
GTTTTTTTTTAATCAAACATGAATAAATGCCAAAGTCGCTTGCTCATAGA
CAACGCGACCCAGCCTAAAGCATAATATGGTTGTTTGATTGACGCTGTGC
ATGTTTCTACAGGATATGTGGCCAAGCCTTACATCAGTATTGGCTGTTGG
AGGGACACGGGAACCCGCGCCATTCCTACTCTGGAGGGGAAAGACAAACG
TTTAGACGGCAGCTATACCTCACGCACAGAAGCCATCGAAAAGTGCTACC
AGGTGGCCAAGTCGCGTGGCTTCCGTATCTTTGCGGTCCAAAATGGCGGC
TGGTGTGCCGGATCTGCCTACGCCTACCGAACCTACAGGAAGTACGGAGC
ATCAGCATCCTGTAAGAAAGACGGGGAAGGAGGAGCCTGGGCAAATGAGG
TTTATCTCATCTCAGGTATTGTAGTTTTCTGTCTGGACCTAGAAAATCGC
ATTTTTTTCTTAGTACCTTTTATCCCTCATGCGTATAATGAATTTATTTG
CATAATTAATAAGTCATGAGATGTCACTAGAAATTTAAGCATGATATGAC
AAAGGAATAAAATCGTGGAACCCTTGCTTTTACATCTAAGTCGATTTGTT
TAAACTATCCACATCGTCTCGATACAACTATCTACTACAATCTTTTTTTA
CTTAAGA Coding sequence (CDS) from alignment at Sc0000016:472600..479906- >transcript:BL96700_cuf17 ID=transcript:BL96700_cuf17|Name=transcript:BL96700_cuf17|organism=Branchiostoma lanceolatum|type=CDS|length=852bp|location=Sequence derived from alignment at Sc0000016:472600..479906- (Branchiostoma lanceolatum)
ATGGCCTTGCCTAAGGCAGGATATGTGGCCAAGCCTTACATCAGTATTGG
CTGTTGGAGGGACACGGGAACCCGCGCCATTCCTACTCTGGAGGGGAAAG
ACAAACGTTTAGACGGCAGCTATACCTCACGCACAGAAGCCATCGAAAAG
TGCTACCAGGTGGCCAAGTCGCGTGGCTTCCGTATCTTTGCGGTCCAAAA
TGGCGGCTGGTGTGCCGGATCTGCCTACGCCTACCGAACCTACAGGAAGT
ACGGAGCATCAGCATCCTGTAAGAAAGACGGGGAAGGAGGAGCCTGGGCA
AATGAGGTTTATCTCATCTCAGGTATTGTAGTTTTCTGTCTGGACCTAGA
AAATCGCATTTTTTTCTTAGTACCTTTTATCCCTCATGCGTATAATGAAT
TTATTTGCATAATTAATAAGTCATGAATGGCCTTGCCTAAGGCAGGATAT
GTGGCCAAGCCTTACATCAGTATTGGCTGTTGGAGGGACACGGGAACCCG
CGCCATTCCTACTCTGGAGGGGAAAGACAAACGTTTAGACGGCAGCTATA
CCTCACGCACAGAAGCCATCGAAAAGTGCTACCAGGTGGCCAAGTCGCGT
GGCTTCCGTATCTTTGCGGTCCAAAATGGCGGCTGGTGTGCCGGATCTGC
CTACGCCTACCGAACCTACAGGAAGTACGGAGCATCAGCATCCTGTAAGA
AAGACGGGGAAGGAGGAGCCTGGGCAAATGAGGTTTATCTCATCTCAGGT
ATTGTAGTTTTCTGTCTGGACCTAGAAAATCGCATTTTTTTCTTAGTACC
TTTTATCCCTCATGCGTATAATGAATTTATTTGCATAATTAATAAGTCAT
GA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000016 | genome | Sc0000016:472600..479906 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96700_cuf17 |
| Biotype | protein_coding |
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