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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96698_cuf3 >transcript:BL96698_cuf3-protein ID=transcript:BL96698_cuf3-protein|Name=transcript:BL96698_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=142bp
ASCELCAYLDSADDYLAQTASCSERRQYVCRSDTKPCEQAQDICFNNGEC
STCFNDSYTFCSCPLGYEGVFCNIDIDECASNPCQNGGTCLHGLNNYHCH
CSIGYEGHNCQIDLDLCAEVSCPFNWQCEDRGNHFICLGKNS Run BLAST on NCBI mRNA from alignment at Sc0000016:1928298..1932149+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96698_cuf3 ID=transcript:BL96698_cuf3|Name=transcript:BL96698_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3852bp|location=Sequence derived from alignment at Sc0000016:1928298..1932149+ (Branchiostoma lanceolatum)
CCGCCTCCTGTGAGCTGTGTGCGTACCTGGACAGCGCGGACGACTATCTG
GCCCAAACTGCCTCGTGTTCGGAACGTCGCCAGTACGTTTGTCGGTCGGG
TAGGTAATATACTCTTGTCATTGGAGAAAAAGACTCTTTTTACACAACCA
AGGGATTTATTCAACCGACGTTTCGGTGACCCTCTGTCACCTTCTTCAAG
GCAATTCTGACTGGTTCACATAGCAATGCAGCACAGGTGTTGCTGCTTAT
ACTTACCAACCTGATGAAACTATTGCTGCTTATACTTACCAACCTGATGA
AACTATTCATGGATACTCTTGTCATTTTACTTAACACAATACATGTCTCT
TTTTTAAAGAATCTTTTTACCTGTATGCCTTTGTGTAGCATGTTTAGTGG
TAACACTAATATACGTTTGTCAACTTTAGTGGGTCACTACTACGTCTGTT
ATGTTTCCACACTTGAATAAAAAAACAAGGAAAACAATAGGTAGGTAGGT
ACTAAGTAGTACGACGTGTTCACGTGTGACGTGCACCGTCGGCCTTACGG
CCCTGTCACGCTTGTGCGTATATTCAAATGCGTATGAGTTGCGCATGGAC
ATCTTTTTGGTTTATATAAAATTTTCAGGGAAGAAGTTGTTTTTACCTTG
ACCCACCGTTGTGTAGCCTAGTTATCGAACCAAAGAAATGACTTCTTCCG
CTGCAAACTTAACCTAAACCCAAAACATGTTGATACGCAACTCATGCGGG
CTTGCATATATGCACAAGTGTGACAGGGGCTTTAAGTTGTAACGCTAATA
AACGTTTTGTCAACTTGAGTGCGTCACTACTATGGCTGTAGTCTTTCTGC
ACTTGAATGAAAAAAACACACGATGCAACTGCTAAATGTAATGGATAACA
AATACTAGTGGGCTTCAGGTATTCAAGTATGAATTGAAATTGAATGTAGA
ATCTAGAGTTTTATTAAGTACTGATGAAGTGTATTATAATCATTTAGATA
CAAAGCCGTGCGAGCAAGCACAGGACATCTGTTTCAACAACGGCGAGTGC
TCGACCTGCTTCAACGACTCCTACACCTTCTGCTCATGCCCTCTCGGATA
TGAGGGAGTCTTCTGCAATATCGGTGCTGTTCTTATTCTATTTCCTATAA
CATAGCGGCAGATAGGTAACATGTAGTTAGTTACACTTACTCAGATTATC
TACAACTAAGTGGGGTCGTGTGGCGTAACGGCAGGGTTTTCGGCACAGAA
CCCAATGGTGCCGGGTTCGAATCCCCTGACGCCACCGATCGTATGCCCTT
GGGAAAAAGACACTTAACACGACTTTCCCCACTCCAGCTAAGTGTAAAAA
CGGCTACATTATGTGTGTGGGTCACGACATCAGCAATAGCTGCCTGTGTC
CCACGTGTAATGCATTGTTGCAATCCCAATAAAATACAAAATTATCTACA
AAAAATGATTTGTCTTATTCTTATTGCATTGCTACCTGTGGTTTAACACC
AATAGAATAAACTTTCAAATAATACAAATCATGACAAAAATCGATTCTAG
AATTGATAAGAAATTTGCAACCAATACTCATGATGCCACTGTTCATACAG
ACATTGACGAGTGCGCCTCCAACCCTTGCCAAAACGGCGGAACCTGTCTC
CATGGCCTCAACAACTACCACTGCCACTGCTCCATAGGATACGAAGGACA
CAACTGCCAAATAGGTATTGTTTCAGAGACGTCCCCATTAGTTGCGTATT
AAAGGTGCCCTAAGCGATTTTAGGGGATAAAACTTAAAATATTCTGGGGA
AAGCAATTCTGTTTGGTGAGGTTGAAATTTACATTTACATGTACTTCCCT
ATATTAGCACATCTGCATCATTATTTTATACTTTGGGCGTTTAAAAATAG
TACAGAAGCAAGCCACAAAAGGAGTATTTTATTTAATTTGGGTCCCTTCT
GTCGACAATCTTCGGTAACTTCCGGCCGCGTGACGTCACAATGCCCAAGC
ACATTGAGCCATGACCACGTGATCATTTCTTCGGAAGGGTTCGGGACTTA
TCGGTCAGAATCGTGCATGTTCGGAAGATTTGAAATGATGGCTGGCCTCC
AAGTGCTCAGATTTTCAATGAATTCCCACCGCACAACGACATTACATTTT
TGCTCCATGATGGTCGATATACAATGGGATAGTGTCCTCTAAACTTACTA
TGGATAGAAATTAAATAAAAAATTGATTTTGAATATATGACTTTCAGTGC
CCTAATATTGCTTAGGTTGCCTTTAACATGTTTCTGGTTTAGGTTAACTT
TTGCAGCCGAATAAGTGATTTCTTAGGTTCGATCACTAGACCGCACAACA
GTGGATCAAAGTAGAAAACTTTTTTTCCCCGCAAATCTTACTTATTATAT
AAACCAAAAAAATGTTAATGCGCAACTCACGTGCACTTGAATATACGCAC
AAGTGTGACGGGGCCCTAAGGAAATTTATCTTTTTGTGCCATCTAAGTGA
TCTACCGTTCACTCAAGTCCCGTTAAACTTCATAACGGCATATGATGTCC
AGGTTACTCGAGTATACTCAAGCTTTGTTACTTGAGTATACTCCTTAAGG
TAGGTCATGTCGTTATATTATCATCATCTTGTCGTGAGAGTATCGCGGAT
GAACATCACCCTCCTCCTCCAGTCCTCCCTGTCCTCCATTGCTCTGGGTA
GTTCTTACGTTGTGCATCCTGCATCCTCACATGTACAGAGCTGCTGTATG
TAGGTCATGTGAGGTCTGCCTACACTTACATTATCACTCATCCAAAATGT
ACGAGTTATCACTGTATAACTAAAAAGACAACAAAACAGGCAAAACGGTG
TCGTCATTTCATCGCTGAAATTCGTTGAGCGCTTTTTCGAATCGCCCGAT
CGCAGCGAGATTGCCAGCGTTCCTCGGTCCAGTGAGATAAGGGCTTTAGC
AGGTACCTGATGAGAGATGGTTAGAGGACAACGGAGGACAGGGAGGACTG
GAGGAGGAGGGTGATGTTCATCCGTGACACTCTCACGACAATATGATGAT
GATATAAAACCTGGTGTTCTCAGTCCTATCGTTAGTCACTGACGAAAGAC
AGTGGATACTGTCTGAAACGTCTGACTGTTTCAAAATCTTATCCAGTTGC
TTGAGTAATTATTTTTGGCGTATCTTATTACCTGGATGTCTAACCTTCAT
CAGCGTATCAAGATGATGATGATTATGAGAGATGTGTATTTAACCTTCTC
CGTTCGTTTTGTTCTCCAGACCTGGACCTGTGTGCTGAAGTCTCCTGTCC
GTTCAACTGGCAGTGTGAAGACCGAGGCAACCATTTCATCTGCCTCGGTA
AAAATAGTTAGAAGGAATATCTGCCATGCCAATTTCTTTACATATTTACA
TCTTAGAAAATGAATTAAGCACGTTTCAACAGGCTATGAAAGCTCCCTTT
ATTTATCGAAATGACCATGTCTGGTTTCCCTAAAAGTGTTTCAAGATCTA
TTACTTTTGTGACCCTTAATGATGATATTTCAATATTATTGTTGCCTAAA
TTGAGCCTGACTTAATGATAGAAAAGCAAGCTCCAATACATATGTATGAA
CTATTTAAGATATCAACAATTTGCAATGCTCTCTCTGTGTAGCCGGGACA
ACCAGGATGTCTGAGCCTTACCAGTGCAGCAGCGCCTCCTGTCCGGACGG
CATGTACTGCAAGGAGGAGGGGCCGGCATCTTTCTCCTGCAGAGCCGGGT
AGATTTAGGGTTCGTCCGACGTGAAACTCCTACGTGGTGAAGCAGACTGA
AAAAAATGCAAAGCACGTGGGACAAATAAAAGTTAAAGCAAATGGAAAAT
CG Coding sequence (CDS) from alignment at Sc0000016:1928298..1932149+ >transcript:BL96698_cuf3 ID=transcript:BL96698_cuf3|Name=transcript:BL96698_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1716bp|location=Sequence derived from alignment at Sc0000016:1928298..1932149+ (Branchiostoma lanceolatum)
GCCTCCTGTGAGCTGTGTGCGTACCTGGACAGCGCGGACGACTATCTGGC
CCAAACTGCCTCGTGTTCGGAACGTCGCCAGTACGTTTGTCGGTCGGATA
CAAAGCCGTGCGAGCAAGCACAGGACATCTGTTTCAACAACGGCGAGTGC
TCGACCTGCTTCAACGACTCCTACACCTTCTGCTCATGCCCTCTCGGATA
TGAGGGAGTCTTCTGCAATATCGACATTGACGAGTGCGCCTCCAACCCTT
GCCAAAACGGCGGAACCTGTCTCCATGGCCTCAACAACTACCACTGCCAC
TGCTCCATAGGATACGAAGGACACAACTGCCAAATAGACCTGGACCTGTG
TGCTGAAGTCTCCTGTCCGTTCAACTGGCAGTGTGAAGACCGAGGCAACC
ATTTCATCTGCCTCGGTAAAAATAGTTAGGCCTCCTGTGAGCTGTGTGCG
TACCTGGACAGCGCGGACGACTATCTGGCCCAAACTGCCTCGTGTTCGGA
ACGTCGCCAGTACGTTTGTCGGTCGGATACAAAGCCGTGCGAGCAAGCAC
AGGACATCTGTTTCAACAACGGCGAGTGCTCGACCTGCTTCAACGACTCC
TACACCTTCTGCTCATGCCCTCTCGGATATGAGGGAGTCTTCTGCAATAT
CGACATTGACGAGTGCGCCTCCAACCCTTGCCAAAACGGCGGAACCTGTC
TCCATGGCCTCAACAACTACCACTGCCACTGCTCCATAGGATACGAAGGA
CACAACTGCCAAATAGACCTGGACCTGTGTGCTGAAGTCTCCTGTCCGTT
CAACTGGCAGTGTGAAGACCGAGGCAACCATTTCATCTGCCTCGGTAAAA
ATAGTTAGGCCTCCTGTGAGCTGTGTGCGTACCTGGACAGCGCGGACGAC
TATCTGGCCCAAACTGCCTCGTGTTCGGAACGTCGCCAGTACGTTTGTCG
GTCGGATACAAAGCCGTGCGAGCAAGCACAGGACATCTGTTTCAACAACG
GCGAGTGCTCGACCTGCTTCAACGACTCCTACACCTTCTGCTCATGCCCT
CTCGGATATGAGGGAGTCTTCTGCAATATCGACATTGACGAGTGCGCCTC
CAACCCTTGCCAAAACGGCGGAACCTGTCTCCATGGCCTCAACAACTACC
ACTGCCACTGCTCCATAGGATACGAAGGACACAACTGCCAAATAGACCTG
GACCTGTGTGCTGAAGTCTCCTGTCCGTTCAACTGGCAGTGTGAAGACCG
AGGCAACCATTTCATCTGCCTCGGTAAAAATAGTTAGGCCTCCTGTGAGC
TGTGTGCGTACCTGGACAGCGCGGACGACTATCTGGCCCAAACTGCCTCG
TGTTCGGAACGTCGCCAGTACGTTTGTCGGTCGGATACAAAGCCGTGCGA
GCAAGCACAGGACATCTGTTTCAACAACGGCGAGTGCTCGACCTGCTTCA
ACGACTCCTACACCTTCTGCTCATGCCCTCTCGGATATGAGGGAGTCTTC
TGCAATATCGACATTGACGAGTGCGCCTCCAACCCTTGCCAAAACGGCGG
AACCTGTCTCCATGGCCTCAACAACTACCACTGCCACTGCTCCATAGGAT
ACGAAGGACACAACTGCCAAATAGACCTGGACCTGTGTGCTGAAGTCTCC
TGTCCGTTCAACTGGCAGTGTGAAGACCGAGGCAACCATTTCATCTGCCT
CGGTAAAAATAGTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000016 | genome | Sc0000016:1928298..1932149 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96698_cuf3 |
| Biotype | protein_coding |
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