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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96696_cuf0 >transcript:BL96696_cuf0-protein ID=transcript:BL96696_cuf0-protein|Name=transcript:BL96696_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=158bp
STQHMAKMWKFLLLIAAVIDLPVSSQGNCCGDILREATEVVDQSSGYRVP
DGWTLCYIDGRDAAYHDTPCVDLIQGIPGYGDAQQLLAAGGNFGCWHGNT
GASPGPAFASNSVIENGCRVNTQHSTKLSAWTPGTTTLGVCIKDISCDED
QCISAPCQ Run BLAST on NCBI mRNA from alignment at Sc0000016:1923007..1926546+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96696_cuf0 ID=transcript:BL96696_cuf0|Name=transcript:BL96696_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3540bp|location=Sequence derived from alignment at Sc0000016:1923007..1926546+ (Branchiostoma lanceolatum)
CTCAACCCAGCATATGGCAAAGATGTGGAAGTTTCTGCTCTTGATTGCGG
CTGTCATCGACTTGCCGGTCTCTTCGCAAGGTGAGTGGAGATTTCATCAA
TCCCGTTTGGACCACAGACTTGTTCATTTGTCTGTATTATCTAAAAGCTA
TAGTTGCTGCCTCAGTATTATCTTTGTCAACAACAATAGACCTGGCTTCT
ATCACCGTTCCTACCACATATTGTAAATGCGTTTAGGTTCGCGTGAATTT
TAGTTCGAGGCAGGGTCTTAAGTTCGCCGTTGAAACAATAGTAGCACAAC
GGTCATAGGTGAGCAAACAATTTCGCGGTGGTTTTAAGTTCGCGTTGAAA
GTTCACCGTGAAAACCGCCAACATAAAACCACCGCGAACATTTCTGCATT
TAAAGTATTGTTGGAAGAGTACGCGACGTATCCTTATTACCTGACGCTAC
GTAATTGTCAACTACCGTGACGTAACGTTACATGTATGTTAACATAGCGT
ATAACATGGCAAGTAAAATGGCTCATAAGACATATACTTTTAGGTCTGCA
ATTTTCGACAATACCATATTATAGCTACAGTTTTATAGTAGCACTTTTAG
TACATGAGTAAGAAGAGGATGGCGAAATTAACAGATTTGACGTTGACGCC
GAGTGGCCTCCTCTCAAAAAAACTGTAAAGTCAAAAGTTCTGAGATCATA
AATATACTCTTCTTCATCTCTTTACCATACAGAAGTCTCACAATGAGCAT
TTTAGAACATCTATAACACTGCAGATGTTGATAAATACCACAAAACTGTA
AATGTCAATTATCGGACAAATATATTAATATTTTTACTATCAAAGGATCC
ATGCGTCATCTCTTAATCAGATGTTAATGTTAAGCTTTACACACCTTTCC
TCACTCCACCCAGGTGTAAAACTTGGTCATTAATGAAGTCCAACCCAAAA
AACGTAGACTGTATTCTGTAGCATTTTTTAGAATAGCCATGTGTTCTACT
TGTCAACATTGTTAATTCGCACTATCTGAGTGTACAGTATACCCTTGCTA
TGCATTGTTTCATGGTGCAATTAGCCCTCGGGCAAATAAAACATCAGTAT
TATTCTCTGTATTCTCTGTACGTTGCACTGTCAATATAAGTCATAACAAG
AGTTGTGTTAAAAAAAAAAAAGGCGACGTAAGGATTATGCAAAGTAGGTC
CTTATTTGCATGATTTACATCTTACTATGTTACCCTTGACAAAACCTTCA
AGTGCCACAAATACAAAGTTTCCGTTAATTAGAAATATGGAACAATAGTA
TTTAGACGTTACGCTGCAGTACCGTTACAATATAAGTCATAAAAACCTGA
TTGCAGTGCCACATTGTCATTGTCTGTCAAACAACAAAATAATTATTAAA
ATGAAAAACTTTGCAGGGAACTGTTGCGGTGACATACTGCGGGAGGCGAC
GGAAGTAGTTGACCAGTCCAGCGGCTACAGAGTTCCGGACGGCTGGACGC
TGTGCTACATCGACGGCCGAGACGCCGCCTACCATGACACCCCGTGCGTG
GACCTGATACAGGTGAGTAGCGTGCGTAGTCCCGTGGTTAGCGATCTTGC
CTCCGGGACTAAAGGCCGACCTGCGCGCTAACGTTACTGGAAAGGGTCGC
AGCAATTGGATATGATTTTGGAAACGGTCATACGTCTCAAGTAGCATTCA
CTATCTATAAAATGGTTCCTTCATCTGCAGTACCTGCATGCGTTTCATTT
CATTTTATTTTATTTATACAGGGCAAATACAACTCAGGCTGTGAAGCCTG
TTTTTCAGGTATCCCTGATTTTACATATAAAAAAAACACAACTACGACAT
AGTACACAGTAATAATAATAATCAATCAATCATAAAAGCCATGTCACATA
CAATACAGATTTCAATTTCCGCCGGGATTGCCATTCTTAAAGTTCATAAA
GTTCTATGCGTAGTCCAGTGGTTAGCGATCTTGCCTCTGGAACTAGAGGC
CGTGAGTTTGATTCCGGCTGTGTCGCTCACCCGACATGCGCGCTACCGGA
AAGGGTCGCAGTCCTTAGGACGGGACGTTAAGCCGTGGTCCACTGTTCAT
TGTGCTTGTCGAAAAGAGCTAGGGGAATTTCCCCGGTACAATGAACCTGT
AAATACTGTACATAGCGTCTGTCTTCTCTGTTACGACCAGTGGAAGGTTA
GTACATCTGTTCATTCAGTTCTTTTGAGCTAAAACGGTCATACGTCTCAA
GTGAGCTAAACTGGTCCGAGATCCCTTTATCACTTTCCTCTCCTTAAAGG
GGATCCCTGGGTACGGAGATGCGCAACAGCTCCTCGCGGCGGGAGGGAAT
TTCGGGTGTTGGCATGGCAACACCGGGGCTTCCCCCGGACCGGCGTTTGC
ATCCAATAGTGTCATCGAGAACGGCTGCAGAGTCAACACCCAACACTCCA
CCAAGCTCTCGGCCTGGACTCCGGGTACAACAACACTGGGAGTCTGTATA
AAGGACATCAGCTGTGGTAAGTACTGTTTATTGTTTTTTATTGGTCAGAA
ATTACCCGCAATGGCAGCCTTTCTAGCCCTGAATTGATGCAGGGTTTACA
GATTTACATAATACACAACATATACATATACATATCTTATCCAAATACAC
AACATATACATATACATATCGTATCCACATTTGCATTTTGTGGAACTTTC
GCAAGGGTCTGGGCGGCTGCCATTCGGCGCCACCAGGTGACCTCAATGCG
ACCTTCCCCAACCGAAGCCAGGTACTGTGAAACTGCTACTATATGAATGG
CTCAGTATTTTGTTTTTTTCACTGTGAGACAATCTACGCGAGGATGAATA
GGATGGGGTGGGTTTGTTCTGTGACTTATACTTATACTTATACTGATCAC
GTTATGTTGAAGTAATGTATAGATACGATTATAGCTTGATGTGGATGCAT
AACTTACCCTACGCTAGGTACAAGTTCTCAAACGGCACGTTTGGTTAATA
CGTGAGTTTGAAACAGGCTGACAGAGATATACGTTACATATGTAATCTAC
GTCCTGTTTGACTTATATCAACGTGATTATAACATGTCTGTTAAATTATA
AGCTAGTTCACGGTTGCTAGTACGCATGTGCAGTGTCAAAGGTGAATGCC
CCCGGCTTGAAAACAGTGCTCGTCTCGACATTGTCTAGATTTGCATAACA
ACGCCCAGACGGGTTTTGTTCACGTCTCGGGGCCCTTCACCTTTGACACT
GCACATGCGTAGAAGCAACCGTGAACTAACTTATTACGTGTTGCTGTGAT
GCACGTCTGTGATGCACGTCTTACCTTAAGTCATGTAAATCATTTTAAGA
AGAAAAATTAGCGTCGTGACAACCAGTTAATGACATGTGCGATTGAAAGA
GTCACAAATCTGTGAATTCATAATTCAAATATACAGTAGATATTTGCCTG
TCCTACAGTATTACAGTAATATACCCTGAATACTAAAGATTCAATTGGTA
CCTTGCAGATGAAGACCAGTGCATCAGCGCCCCCTGTCAG Coding sequence (CDS) from alignment at Sc0000016:1923007..1926546+ >transcript:BL96696_cuf0 ID=transcript:BL96696_cuf0|Name=transcript:BL96696_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1896bp|location=Sequence derived from alignment at Sc0000016:1923007..1926546+ (Branchiostoma lanceolatum)
TCAACCCAGCATATGGCAAAGATGTGGAAGTTTCTGCTCTTGATTGCGGC
TGTCATCGACTTGCCGGTCTCTTCGCAAGGGAACTGTTGCGGTGACATAC
TGCGGGAGGCGACGGAAGTAGTTGACCAGTCCAGCGGCTACAGAGTTCCG
GACGGCTGGACGCTGTGCTACATCGACGGCCGAGACGCCGCCTACCATGA
CACCCCGTGCGTGGACCTGATACAGGGGATCCCTGGGTACGGAGATGCGC
AACAGCTCCTCGCGGCGGGAGGGAATTTCGGGTGTTGGCATGGCAACACC
GGGGCTTCCCCCGGACCGGCGTTTGCATCCAATAGTGTCATCGAGAACGG
CTGCAGAGTCAACACCCAACACTCCACCAAGCTCTCGGCCTGGACTCCGG
GTACAACAACACTGGGAGTCTGTATAAAGGACATCAGCTGTGATGAAGAC
CAGTGCATCAGCGCCCCCTGTCAGTCAACCCAGCATATGGCAAAGATGTG
GAAGTTTCTGCTCTTGATTGCGGCTGTCATCGACTTGCCGGTCTCTTCGC
AAGGGAACTGTTGCGGTGACATACTGCGGGAGGCGACGGAAGTAGTTGAC
CAGTCCAGCGGCTACAGAGTTCCGGACGGCTGGACGCTGTGCTACATCGA
CGGCCGAGACGCCGCCTACCATGACACCCCGTGCGTGGACCTGATACAGG
GGATCCCTGGGTACGGAGATGCGCAACAGCTCCTCGCGGCGGGAGGGAAT
TTCGGGTGTTGGCATGGCAACACCGGGGCTTCCCCCGGACCGGCGTTTGC
ATCCAATAGTGTCATCGAGAACGGCTGCAGAGTCAACACCCAACACTCCA
CCAAGCTCTCGGCCTGGACTCCGGGTACAACAACACTGGGAGTCTGTATA
AAGGACATCAGCTGTGATGAAGACCAGTGCATCAGCGCCCCCTGTCAGTC
AACCCAGCATATGGCAAAGATGTGGAAGTTTCTGCTCTTGATTGCGGCTG
TCATCGACTTGCCGGTCTCTTCGCAAGGGAACTGTTGCGGTGACATACTG
CGGGAGGCGACGGAAGTAGTTGACCAGTCCAGCGGCTACAGAGTTCCGGA
CGGCTGGACGCTGTGCTACATCGACGGCCGAGACGCCGCCTACCATGACA
CCCCGTGCGTGGACCTGATACAGGGGATCCCTGGGTACGGAGATGCGCAA
CAGCTCCTCGCGGCGGGAGGGAATTTCGGGTGTTGGCATGGCAACACCGG
GGCTTCCCCCGGACCGGCGTTTGCATCCAATAGTGTCATCGAGAACGGCT
GCAGAGTCAACACCCAACACTCCACCAAGCTCTCGGCCTGGACTCCGGGT
ACAACAACACTGGGAGTCTGTATAAAGGACATCAGCTGTGATGAAGACCA
GTGCATCAGCGCCCCCTGTCAGTCAACCCAGCATATGGCAAAGATGTGGA
AGTTTCTGCTCTTGATTGCGGCTGTCATCGACTTGCCGGTCTCTTCGCAA
GGGAACTGTTGCGGTGACATACTGCGGGAGGCGACGGAAGTAGTTGACCA
GTCCAGCGGCTACAGAGTTCCGGACGGCTGGACGCTGTGCTACATCGACG
GCCGAGACGCCGCCTACCATGACACCCCGTGCGTGGACCTGATACAGGGG
ATCCCTGGGTACGGAGATGCGCAACAGCTCCTCGCGGCGGGAGGGAATTT
CGGGTGTTGGCATGGCAACACCGGGGCTTCCCCCGGACCGGCGTTTGCAT
CCAATAGTGTCATCGAGAACGGCTGCAGAGTCAACACCCAACACTCCACC
AAGCTCTCGGCCTGGACTCCGGGTACAACAACACTGGGAGTCTGTATAAA
GGACATCAGCTGTGATGAAGACCAGTGCATCAGCGCCCCCTGTCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000016 | genome | Sc0000016:1923007..1926546 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96696_cuf0 |
| Biotype | protein_coding |
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