|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96646_cuf0 >transcript:BL96646_cuf0-protein ID=transcript:BL96646_cuf0-protein|Name=transcript:BL96646_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=296bp
MKNLSRDVFSTLASLNKLDLSNNDIAIIPARVLSNLTSLFHLDLSNNNIQ
TLPADFSIIDSLTILGLGGNPWRCDCSLYDIMILVSPRALNQEDLTCSSP
PHMEGDKLKLVTADKVCNHGKCTLGNEEQTCDCNVGWTDPYCDKEVNVAL
GKTAIQSSTYSLVHNKAEKAVDGDRGNSNDRKCAKTGGSRDPQPWWKVDL
ADVYTVTRVSVLIKEERDNFTVRVGPNENFAQNDQCGQTHTATRITGQIF
LVHCDPPIPGRYVSVQMMGTEARLTLCEVEVYITETCCAEPSIDNG Run BLAST on NCBI mRNA from alignment at Sc0000190:111209..114825+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96646_cuf0 ID=transcript:BL96646_cuf0|Name=transcript:BL96646_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3617bp|location=Sequence derived from alignment at Sc0000190:111209..114825+ (Branchiostoma lanceolatum)
GGAGTCTTCTCCAACCTCATTGATCTGGTAAGACTTGATCTGTACAACAA
CAACATTCGCGTTTTCTCTGACGGAGTTTTCTCCAACCTCACCAGTCTGG
AGAGGCTTGATCTGAACAACAACAACATCCACGCTCTCCCTGACGGAGTC
TTCTCACATCTCACCAATTTGGCCGAACTATATCTATCTAGTAACCAAAT
AGATAATCTCCCGGATGAAGTTTTCTCAGATCTCACCAGTTTGAAAAAGC
TGTACCTGCACAACAATAACATCTCAAGTCTTCTATCGTTGTTGAATCTC
ACTAGTCTGACTGTGTTGGATTTATCAGGAAATGATATTTCTGATCTCTC
TGGTGAAGTACTCTCAANGAAGTAATCTCAAACCTTATAAATCTGGAGCT
GTTGATTCTTAGGGATAACAGCATGAAGAATCTCAGTCGTGATGTATTTT
CGACTCTTGCCAGCCTGAACAAACTTGACCTGTCAAACAATGACATAGCA
ATTATCCCAGCCAGAGTTCTCTCCAATCTTACCAGCCTCTTCCATCTTGA
CCTGTCCAATAACAACATACAGACTCTGCCCGCGGACTTTTCAATAATTG
ATAGCCTGACTATCCTTGGATTAGGCGGTAACCCCTGGAGGTGTGACTGT
AGTTTATATGATATAATGATTTTGGTAAGTCCGCGTGCTTTGAATCAAGA
AGACCTTACCTGCAGCTCCCCTCCCCACATGGAAGGCGATAAACTAAAAC
TGGTTACAGCAGACAAAGTTTGTAACCACGGGAAGTGTACCCTAGGAAAC
GAAGAGCAAACTTGTGATTGTAACGTTGGCTGGACGGACCCCTACTGTGA
CAAAGGTAATATTCGTTTTCCTATTTGATTACTAGCAGACTACAGCANTA
ATATTGTTTTCATATTGGATTACAAACAGACTACAGCAGTTTAGAAGGCA
TATTTTCATGTAAAAGTAGCAAAGAAACACAAAATTGAAATATTCATGAG
TATGTGACTTTTATGAATTCAGCACCTCCATAAAGCTAATGGTATCTGAC
ACAAATCAGTAAACTATGGAGACATTGATATACGAAAACTCCTGCACAGC
AAAAACGTACCCCCCCCCCTACTTTTTTATCGCGGTAAATGTACCCCCAA
AAAATAGTCTTGGACAGACAGCTGAGTTCTTTTTCGGTAACCTACTAAGG
AATATCTACAGGGCTTGAAAATTTGATTTGATTTTGATACAAAAATCCAC
CCTTGCCATACTTTTTGCAAAAAAGATACTAATGCTAAATGGTATTTTTT
CTACTGCTCACTTGTAGAAGTCAATGTCGCCCTTGGAAAGACAGCAATAC
AGAGCTCCACTTACTCCCTCGTACACAACAAAGCCGAAAAGGCGGTGGAT
GGTGACAGAGGGAATAGTAACGACCGCAAGTGCGCTAAAACCGGGGGGTC
AAGAGACCCTCAGCCATGGTGGAAGGTGGACCTGGCAGATGTCTACACAG
TCACCCGAGTCAGCGTTTTGATCAAAGGTGACCACTGCTTTGTTTGTGAA
CGCCTGCTGTCTATATGTCCATTGAAATGTCTAAGTCGATCGCAATCTTC
CGCCGTTTATTTTCACAAGGAATTATTGGTAGTCTACTTGCAGTTTTCGG
GCAAACACCCTGCAACTAATATGCCACGCGACGCCACAATGCGATACAAA
TGTTGCCTTTAACAATACTTAGGTCAACTTATTCTATCTTAAGACACGTG
ATGTAAAAAATTCGTTTCCCTTTCTACGCGTCCGTCAAAAGATCCAGTGT
ATGCTTTTAAAACGACGAGAAGCACCTTATTCCTTCGTGACACGGAGTAA
TGTTACTGGTGCTGATACTAATACTACAAACACATGTTTTTCCATTTTCA
GAGGAAAGAGACAACTTCACGGTACGAGTTGGGCCGAACGAGAACTTCGC
CCAGAATGACCAGTGTGGTCAGACTCACACGGCCACACGTATCACAGGGC
AGATATTCCTTGTGCACTGTGACCCGCCGATACCCGGCCGTTATGTGTCG
GTACAGATGATGGGAACGGAAGCGAGGTTGACGCTGTGCGAGGTAGAGGT
CTATATTACAGGTAATATAGCCCGAACACCACTTTGAATGTACGGTCAAA
CCAATACCATTGGAGACTTGACGAAAACAAAATACATCGTCACCAACATT
TCAGTCGCCCTGTTCTGTGATAAACAGACGAAATTATGACATGTCCACTT
TCAGAACATTTTCTGCATAGTAATATCCCCTGTCGTATGACCAGCATGAG
CTATCTTCATTACCTTCGCCAAGAAGGAATGTTCTGCCGAGGGTATATCT
GTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTATGAACACGTGAACATGATAACTTGAGGATGC
TAGAATGGATTGTCGCGATATTTGGTATGTCGGTAGGTATTTATAAAACC
TGGAAATGATAAATAGATTTTGGGGCCCTTATTTGCATAATCAATGAGGA
AGATTCCTAAATCCACTATATTGCATGATATGGGTCTCTAACATGTGGCA
CCTAACACCTGTGATCAGTTGACACACTGCACTGTTGCAAATATTCCCCT
GCTGGCAGAGCCTGTCCCCAGCAGCCTTACAGATAGTGGTCAAAACACAT
TGGGATAGCCAGAACCTGGATACTACTTCTTTTTTTATCTGTGGATAGCT
AAAGTCATGCTTGATTTAATGAAATGATAATTATTAAATAAGAATCTAAT
TTGCTGACTTACGAAAAAAATTCATAAACCCACTACATAACATGATAGGA
CTATCAAAATGTAACATTATGTAAAGGAGAAATAGTGGGACATTGATAGA
TAGACGTTATGCAAATGAAGACCTAATTTGCACAATCAATGTGAAAATAC
TGTAATTCCATATTGGTAAATATTTTCTGCTTGTCACCATGACCTGTACT
TATAGATAATATCTCATCATAGAATAAACGTGCAATAATGGTATTTCGTT
CGATAATTGGAATTTAATACTTTGGCATTTGGAAGATATGTGAAGGTGAA
CATGGTTAAATATTTATTATGCAAATGAGGTCATTATTTGCATAATTGAT
AAGAAAAAGGCTAAAATAGCATTCTTTGTTAAGATAACACTGTCATGCGT
AAGCCAACTTCTGCCAGTTGGGTGGAGAATATGGTCAACTGATTACATTA
TTTGCACGATAAACGAGACACACTTGTAATTCATCAGTCGAAAAGGTAAA
AATTATATGGTGAAGGTAAGAGGTCGTGGAAGGCGTGATGATCTAATTCA
AAACGGTGGGTTTAACCTTTGCGGTAGACCTGATCTTATTGTATCAAAAG
GGTACATTAACTGTTATTCAATTTTAGGCATAGCTGCAAACTTTTCCAAC
GAACACACCTCTTCATGACGTTTTAGCATTATCAAGTCAGCATGCCAACA
CTTTTTAACACTTTGATATTTATTCGGTCCTTCAAATGTATTTTGCTATC
AATTCAAACACTTCTGACTCCTGCTTTAAAGAAACCTGCTGTGCTGAGCC
GTCGATAGACAACGGGA Coding sequence (CDS) from alignment at Sc0000190:111209..114825+ >transcript:BL96646_cuf0 ID=transcript:BL96646_cuf0|Name=transcript:BL96646_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3552bp|location=Sequence derived from alignment at Sc0000190:111209..114825+ (Branchiostoma lanceolatum)
ATGAAGAATCTCAGTCGTGATGTATTTTCGACTCTTGCCAGCCTGAACAA
ACTTGACCTGTCAAACAATGACATAGCAATTATCCCAGCCAGAGTTCTCT
CCAATCTTACCAGCCTCTTCCATCTTGACCTGTCCAATAACAACATACAG
ACTCTGCCCGCGGACTTTTCAATAATTGATAGCCTGACTATCCTTGGATT
AGGCGGTAACCCCTGGAGGTGTGACTGTAGTTTATATGATATAATGATTT
TGGTAAGTCCGCGTGCTTTGAATCAAGAAGACCTTACCTGCAGCTCCCCT
CCCCACATGGAAGGCGATAAACTAAAACTGGTTACAGCAGACAAAGTTTG
TAACCACGGGAAGTGTACCCTAGGAAACGAAGAGCAAACTTGTGATTGTA
ACGTTGGCTGGACGGACCCCTACTGTGACAAAGAAGTCAATGTCGCCCTT
GGAAAGACAGCAATACAGAGCTCCACTTACTCCCTCGTACACAACAAAGC
CGAAAAGGCGGTGGATGGTGACAGAGGGAATAGTAACGACCGCAAGTGCG
CTAAAACCGGGGGGTCAAGAGACCCTCAGCCATGGTGGAAGGTGGACCTG
GCAGATGTCTACACAGTCACCCGAGTCAGCGTTTTGATCAAAGAGGAAAG
AGACAACTTCACGGTACGAGTTGGGCCGAACGAGAACTTCGCCCAGAATG
ACCAGTGTGGTCAGACTCACACGGCCACACGTATCACAGGGCAGATATTC
CTTGTGCACTGTGACCCGCCGATACCCGGCCGTTATGTGTCGGTACAGAT
GATGGGAACGGAAGCGAGGTTGACGCTGTGCGAGGTAGAGGTCTATATTA
CAGAAACCTGCTGTGCTGAGCCGTCGATAGACAACGGGATGAAGAATCTC
AGTCGTGATGTATTTTCGACTCTTGCCAGCCTGAACAAACTTGACCTGTC
AAACAATGACATAGCAATTATCCCAGCCAGAGTTCTCTCCAATCTTACCA
GCCTCTTCCATCTTGACCTGTCCAATAACAACATACAGACTCTGCCCGCG
GACTTTTCAATAATTGATAGCCTGACTATCCTTGGATTAGGCGGTAACCC
CTGGAGGTGTGACTGTAGTTTATATGATATAATGATTTTGGTAAGTCCGC
GTGCTTTGAATCAAGAAGACCTTACCTGCAGCTCCCCTCCCCACATGGAA
GGCGATAAACTAAAACTGGTTACAGCAGACAAAGTTTGTAACCACGGGAA
GTGTACCCTAGGAAACGAAGAGCAAACTTGTGATTGTAACGTTGGCTGGA
CGGACCCCTACTGTGACAAAGAAGTCAATGTCGCCCTTGGAAAGACAGCA
ATACAGAGCTCCACTTACTCCCTCGTACACAACAAAGCCGAAAAGGCGGT
GGATGGTGACAGAGGGAATAGTAACGACCGCAAGTGCGCTAAAACCGGGG
GGTCAAGAGACCCTCAGCCATGGTGGAAGGTGGACCTGGCAGATGTCTAC
ACAGTCACCCGAGTCAGCGTTTTGATCAAAGAGGAAAGAGACAACTTCAC
GGTACGAGTTGGGCCGAACGAGAACTTCGCCCAGAATGACCAGTGTGGTC
AGACTCACACGGCCACACGTATCACAGGGCAGATATTCCTTGTGCACTGT
GACCCGCCGATACCCGGCCGTTATGTGTCGGTACAGATGATGGGAACGGA
AGCGAGGTTGACGCTGTGCGAGGTAGAGGTCTATATTACAGAAACCTGCT
GTGCTGAGCCGTCGATAGACAACGGGATGAAGAATCTCAGTCGTGATGTA
TTTTCGACTCTTGCCAGCCTGAACAAACTTGACCTGTCAAACAATGACAT
AGCAATTATCCCAGCCAGAGTTCTCTCCAATCTTACCAGCCTCTTCCATC
TTGACCTGTCCAATAACAACATACAGACTCTGCCCGCGGACTTTTCAATA
ATTGATAGCCTGACTATCCTTGGATTAGGCGGTAACCCCTGGAGGTGTGA
CTGTAGTTTATATGATATAATGATTTTGGTAAGTCCGCGTGCTTTGAATC
AAGAAGACCTTACCTGCAGCTCCCCTCCCCACATGGAAGGCGATAAACTA
AAACTGGTTACAGCAGACAAAGTTTGTAACCACGGGAAGTGTACCCTAGG
AAACGAAGAGCAAACTTGTGATTGTAACGTTGGCTGGACGGACCCCTACT
GTGACAAAGAAGTCAATGTCGCCCTTGGAAAGACAGCAATACAGAGCTCC
ACTTACTCCCTCGTACACAACAAAGCCGAAAAGGCGGTGGATGGTGACAG
AGGGAATAGTAACGACCGCAAGTGCGCTAAAACCGGGGGGTCAAGAGACC
CTCAGCCATGGTGGAAGGTGGACCTGGCAGATGTCTACACAGTCACCCGA
GTCAGCGTTTTGATCAAAGAGGAAAGAGACAACTTCACGGTACGAGTTGG
GCCGAACGAGAACTTCGCCCAGAATGACCAGTGTGGTCAGACTCACACGG
CCACACGTATCACAGGGCAGATATTCCTTGTGCACTGTGACCCGCCGATA
CCCGGCCGTTATGTGTCGGTACAGATGATGGGAACGGAAGCGAGGTTGAC
GCTGTGCGAGGTAGAGGTCTATATTACAGAAACCTGCTGTGCTGAGCCGT
CGATAGACAACGGGATGAAGAATCTCAGTCGTGATGTATTTTCGACTCTT
GCCAGCCTGAACAAACTTGACCTGTCAAACAATGACATAGCAATTATCCC
AGCCAGAGTTCTCTCCAATCTTACCAGCCTCTTCCATCTTGACCTGTCCA
ATAACAACATACAGACTCTGCCCGCGGACTTTTCAATAATTGATAGCCTG
ACTATCCTTGGATTAGGCGGTAACCCCTGGAGGTGTGACTGTAGTTTATA
TGATATAATGATTTTGGTAAGTCCGCGTGCTTTGAATCAAGAAGACCTTA
CCTGCAGCTCCCCTCCCCACATGGAAGGCGATAAACTAAAACTGGTTACA
GCAGACAAAGTTTGTAACCACGGGAAGTGTACCCTAGGAAACGAAGAGCA
AACTTGTGATTGTAACGTTGGCTGGACGGACCCCTACTGTGACAAAGAAG
TCAATGTCGCCCTTGGAAAGACAGCAATACAGAGCTCCACTTACTCCCTC
GTACACAACAAAGCCGAAAAGGCGGTGGATGGTGACAGAGGGAATAGTAA
CGACCGCAAGTGCGCTAAAACCGGGGGGTCAAGAGACCCTCAGCCATGGT
GGAAGGTGGACCTGGCAGATGTCTACACAGTCACCCGAGTCAGCGTTTTG
ATCAAAGAGGAAAGAGACAACTTCACGGTACGAGTTGGGCCGAACGAGAA
CTTCGCCCAGAATGACCAGTGTGGTCAGACTCACACGGCCACACGTATCA
CAGGGCAGATATTCCTTGTGCACTGTGACCCGCCGATACCCGGCCGTTAT
GTGTCGGTACAGATGATGGGAACGGAAGCGAGGTTGACGCTGTGCGAGGT
AGAGGTCTATATTACAGAAACCTGCTGTGCTGAGCCGTCGATAGACAACG
GG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000190 | genome | Sc0000190:111209..114825 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96646_cuf0 |
| Biotype | protein_coding |
|
