Blg00843.5 (mRNA) - B. lanceolatum

Overview
NameBlg00843.5
Unique NameBlg00843.5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000003:506364..515032-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00843.5 ID=Blg00843.5|Name=Blg00843.5|organism=Branchiostoma lanceolatum|type=mRNA|length=8669bp|location=Sequence derived from alignment at Sc0000003:506364..515032- (Branchiostoma lanceolatum)
GTTTCTTAACTGCAGTTTCTTATCTCCCCTCCAGACGTCTCGAGCCATGT CTGAGGTGCAGTCCGAGGAGAAGAAGGACCCCCCAGCGAGCGAGCCGGGC GCCGTAAGCGGACACCACATCGTGCCGCCGCCCGGTCACCACGTGGCCAC GCCCGCCGACCACCACGCCCCAGCCCACCACGGCTACACGCACGGCAACA CCGACCACCATGGCATCATAGATCACCACGGCAACCTGGATCACCATGGC AACATTGATCACCATGGCAACGGGCATGGGTCATCTGCGCCTGGGCACTT CTTATATGGTCAGTATTTCCTTATATGGTCAGTATTTCCTTATATGGTCA GTATTTCCTTATATGGTCAGTATTTCCTTATATGGTCAGTATTTCCTTAT ATGGTCAGTATTTCCTTATATGGTCAGTATTTCCTTATATGGTCAGTATT TCCTTATATGGTCAGTATTTCCTTATATGGTCAGTATTTCCTTATATGGT CAGTATTTCCTTATATGGTCAGTATTTCCTTATATGGTCAGTATTTCCTT ATATGGTCAGTATTTCCTTATATGGTCAGTATTTCCTTATATGGTCAGTA TTTCCTTATATGGTCAGTATTTCCTTATATGGTCAGTATTTCCTTATATC GTCAGTATTTCTCTCGTCCAAGAACAAAACAATTGGATGTGTTTCATCTT TTGATCTTTTATGATAGAATGGCTAAAATGAAGCTAGAATGTTTTAATCA CCTTCATTTAAGTAACTGAGTCTTGAGTGTGCCCCATAAACTTGAGAATT ATCTTTAAAGGAAAGAAAAACTTGAAGAAAGATGTAAATTGGCAGAAAGT TGTCAGAAAAATGATCAACTTATAAGTGATACACAAGACCACTACTAAGA ATTGAGTGCATTTGATAGAAGTACACAGCTTGCCGTAGTAGGTAAGTATT CCTGATGAGAAGACCATAGAAAGATTGTTTAAAATTCAGTGAATTTTTTC CGTAGGTTCAGGCCAAAACATCCTGACAGACATCCCGGGACTGGGGGGAG ACGAGGCCGAACCACAGAGGGAGGAAGAGCAACAGACACAACAGCCGGCA GCAGCCTCTCCAGGGGAGGAGCAGCAGCAGGCGGAAGAGCCACTTGTGCG CTCGCCACAAGAGACAGAGGAAAATGTAGGTGTCTGGAATTTACGGAGAC TTTTATAATAGAAGTATTCACAGAAGAACCTCCCAAAGAATTCACGAATG CTGTGTTCTTAATTGTTATAGGTAGCATTGTTTACAGAAGTGTTGTTTGT GGTTTTGTTTGTTGCTAGGTAGCGGCGCAGACAGAGAGCGTGGTTCGTGA CTTCCTGTTCCAGAGACACCAGCGCGAGCAGGCGCGGGAATCCCAGGTCG GGGAGTGCACGCCCTCCATGCCCGAACTCACGCCCGACCTTAACCCACTC AGGTAATTATAAGGACAGTAGCACTGGTTTCCACAGATAAAGTCACAATC AGACCAGTTAGATGTACATGTTGTTTTGTATAAAATTATTCGAACTTGTG GTTCTGGTTTAACCGTAAGTTTCACAGCATTATGTTATTCAGACAGCATT TTTGTCTCTGTTTATGTTATGGTGTATAGTATAAAGTGAGTGGACTCATT CCTCAATGGTGTGATGATTACACATTTTTACAGATATTCGACTTCAATAC TTCATCAAACAAACCAAATTTGTTGTGTCTTTTGTGTTGTACTTTGCGTC AATGCAATGGTTTTATTGGGAAAACTTCTTACAATAAGAATGTTCCATAA CTAACAAGAAGCGATTTTCACAAAGCTGAAAAGCAACTTAGTTTACGTGT GTAACATCCCATCATGCACCAAAAATAATTACTCAAGCAACTGGATAGAA TTTTAAATTCGATCCAGTTGCTTGAGTAACTATTTTTGGCGTATCTTATT ACCTTGATGTCTAACCTTCATCAACATGTCCCATCATGCCATGTGACATT TCCCATCATGCCTTGTGACATGTCCTATCATGCCTTGTGACATGTCCCAT CATGCCTTGCCCCCAGCCGCGAGAGCGAGGTCGGGCGGAAGCTGGCGATG ATCGGGGACGAGATCGAGAACCGCTACGAGTCAGAGTTCAAGGCCATGAT CAAGACGCTGCGGGTCACCCCGTCTACGGCGTACGAAGCCTTCGCTGGCG TCGCTCGAAGGTCAGTGGAGGTCGCATGCCTCGTGGTTGCCATGGTTGCT TTCGAATTTTACTGCTGTTTTGTTGATACAGTCAAACATGCCTAAGGTCA GTGGAGGTCACATACATTGTGGTTGCCATGGTTACTTCAGAATTTAACTG CTGTTTTGTTGATACAGTCAAACCTGCCTAAGAAGACCACTTGGGACTGA TAAAATCTGACAGGTGGTCACTATAGACAGGATTCTTTATGCTTATGTCA CGAGAAAATTATCTAAGGAGGTTATTCTGTGACGAGATAAACTGGGGCAG AATAGCGGCGCTTCTATGCTTGTTTTATTAGTGTAAGGCGTCCAGAAGAC GCCCTGATGCCTTGCTGGCTAATACCTCCCCCTTTTGCAGATTGATTGAT TGATTGATTGACAGGTTATTCCGTGACGGCATCAACTGGGGCAGAATAGC GGCGCTGCTGTGCTTCGGGTACCGCATGGCGGTGGACGTGCTCGAGCGGG GGATCCCGGACTTCGTGCGGCAGATCATCAAGTACGTCGTGCAGTTCATC ATCTCCGAGCGGATAGCCAGGTGGATCGCTGAGCACGGCGGATGGGTGAG TCTACACCCCTGTTTGTGTAATGGGCTCTTCCAAATTCTGTCAGAGTTGT CTGATTTTGGGCTATACCACTTGATGTTTAGGACACAAAAGAGTGATTTA TCGTATAGCCAGGTGGATCGCAGAGCACGGCGGATCTGAGTTTGAGTTTG AGTTTATTTAGAAAATCCACTAGTGATGTGCCCAAAGGCACACCCCTAGT CTTCCTGGACTTCTAACTTGACATCACAATAAATACAGTAGACATAGCAG TGCATACCATGGCAATGACAACATAATGAACAGCATGACAATGTAACGTA TGTTCAATAATTACAGGAGTCTACACCCCTTTTGAGATGATGGACTATTC GGAGTTCTGTCAGAATTCTGTCAGAGTTGTCTGATTTTAGACTAATCCAC TTGATACTCAGGGGTGTTGATATACATAGTTGTTAATTTTACCTTGTATG AATATTTTAGGGTCATAGATTGTAAGAAGACCGTAGCACATTCTCAATAA GGATTGCTATCTGCTAATTAAACGTCATGTGTTAACAGATTTTGTAAGTT TTGAGGACATTTCTCACCATGTTATTTTGTGTCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CNGGTGAGTCTAAAGCGCACCCCTGTTCTGATAATGGACTCTTCCGAGTT CTGTCAGAATTCTGTCAGAGTTGTCTCATTTTAGACTAATCCACTTGATA CTCAGGGGTATTAAAATACATAGATTTTTAATTTTACCTCCTATGAATAC TTAAGAGTCGTGGATTTTAAGAAGACCGTAGCACATTCTCAATAAGGATT ACTATCTGCTAATTAAACGTCATGTGTTAACAGGATTTGAAAGTTTTGAG GAAATTTCTCACCGTTTTATTTTATGTCTCCCCCCCAGAGAGGCGTCCTG AGCTACACGCTAAACGAGGGGTTCCAGGCGCTGGGCACAGTCTTCGTGGT CGCTGCAGTTACCGTCATCGCCGCCGTGTGGCTCTTCAGACGGTCATAGA ACCACCAGCAGGTGCCCCTCCCCGTGCCAGGAATGGTTCAGTCTGAAATT TGATCAGACTGGTCATTCTTCCGATGGTACCACTTCAGTTGTAGGGATGT CAGGATAGATACATGTATTCCCTGTACCATATTGATCGATTCGTAATTCA CCCCAAAACTGAAGTGGTAGGTTCCACGTTTAGGTGGGCGTTGTGAGGTT TGGATGATACCATTGGGTGAAGGAGGGGACAAAGCTGCTGGTATTTTATG GACCAAGTTTCTGGGTTGTGCTATTGTGGAGGGAGGGGTGTCCTGATAGT GCTGGGAGTGGAAGACTCTGCAGAGCTGTCAGCTGAGGGTTCAGCAGAAA AACAGTCAAACCTGCCCAAGAAGACCACCACAGTCAAACCTGCCTAAGAA GACCACTCAGGGGACCGATAAAATCTGCTCTATGTGGACAGGTGGTCACA ATTCTTAATGCTTGTGTCAATGGAAAAATTATTTGAGGATCCACCAAAAA CTGGTCACCATGGCCAGACAGTCCCTTTGTATAAGTGGTCTCTTTTAGTT TGACTGTTTAATTCTGACCCAAAGTTGGAAGGTTTCTATTTTTGGAAAGT ATTCCAGGCTATTTTAATGGCTATTGTAAATGTTTTCATTGTTAAAATGT ATTAAAGTTGATTGGCCCTGAGGAGCAGGTTTGAATCACTTTGCGACTGG AAAGTTTATGAAATAGTTTTCTCTGCAAACTTCAGTTGACAGCCCTGCAT TGTACATATAATGAGCCATTTTTCAGTGTCTCGTTTGGACTAGGTGACCT GTGCCCTCTAAAACTGACCTATGACCTCTAAAACTGACCTATGACCTGAC CCTTGACTTGCCGCACTTGACTCATGACAAGTCAGGCAAGGCTGAAGATG GCAAGCAATTCATTTGAAAAATTTACTTGTCATTATAAAGTCACAAGATT TTTGCCTTTGGAGCTTTGATGTGTGAAGGGTCAAAGGTCATCTGTGTCCA ATCAGAGGCTGAGAAGAGTTTGATTGACAGGAAGGGAGTTTACAAGGAAC AGGGTGTTGGAGAGAAACAGTAAATAACGTAACTGTCAAGTTTTAGGAAA AATGACAAAAGATTTTAGGCTAGAGGCTCCGAGAGTTGTATTAATATGGG CCATCCCTTTTGAGAAATGGTTGTGCCCAGAACCTGTATGATTGTAACGG GGAATGACCCAATGCATAAGTGAAATGGGGGTGGTCAGGATGTTTATAGG AATACGTTCCACCCAGGTTTTGATCGTTCTGAAGATTCTAGGACGCGACA AGAGGCTGAGAAACATCATATCATAAGACAAGTATTTTCCTATTTCTACA TGTACAAGTCAGTCTGGGTTGGGAGGGAAACAAGATGTCCAAGTCTTCTT CAAGGTCATTCATGCTGTGATTGAAGGTCAAAGGAAGACAAGGTCACACA CTGTTGATGAAGGTCGTAAGAGTTATGAACTTTGATATATTTCTGGTGAG AATCTACAGCAGAATATTCTTACTTGTTCCTGTGTGCTTGAAAAGTGATG TGAATTTCTGGCAAAATTTTTTCAAAATTCTGATAAAAAAATCAAACTCT GACCTCAAACCGATTCTGTTCATATCATTACTGTCTGAAAAGGCTGTAAA TTTGCTCTGCCTGCAAATTCCAGGATTGATGGAATTTCTGTCAGGAAAAC TCAGGAAAGCTGCCGTTGATAAATGATGAATTGTGCTTATCATCGATAAT ATCAGCTACGTAAATGGCCGCTTCTTTCTGCTGTCAAAAGGTACTATTTA GCTGTGGCGATGTTAATTCGACCTTGACTCGCTGTGATGATGTTGATTCA ACCTTGACTCCGATCTTGCTGTGGTGATGTCCGTACGACTCACTGTGGCG TTATTGATACGACCTTGACTTGCTGTGGTGTTGTTGATACGACCTTGACT TGCTGTGGTTTGTAATAAGCATTCAGGTTCAAGGTCCGGAGTTTCAGGGC AGTCGAGGCGGAACTCAATGGGACTGGATCAGAATAAACTTCAGGATCAG TTTGTGTGGAGAGCAATAATCATCGACACTCACCTAAAATCAACCTAATT CAGGGATCAAAACATTAATTTTACTACACAAAATGATGATGGGATACCTT TGAAATAGCTGTTTTAAAGGCAACAAATAAAAAAGTAGTTGTTGAAAACA ACGATCAAAATCTCCCAGTCCAGACTGACTCCAGCTGGCCTATTTGTGAG TAGTTGAAGTTTAGAGAGAATATTTGTGATATTTCTGTGGATGTTTTGTT CGTTGTTTCATGTGACTTTTGTGGAGAAGAAAGAAGACAAGACAGTTAAG TGCCGTAAACGTATCGTTTCCTCGTCTGCCATAATTGTAAAGATGTCTTT TTATTCTGTTTTAAGCTGTTTTATCATGTGACGGGAGGGTATGTATGGGG TTTTGCAGCATGCAGGTGTCATGGAGTATTGCGAACTAAGAGAGGCAAAG TTATGTCAACATTCATAATAGAGGTATTGTTTTGTGACCAAATTTACAAG TTTCAGGTAATTTTTCAACAGAAAACTTAAGTTTCTCGACAATCATGTTC TCTTTTGAAGGCCAAAAGTTGTGCTTTTTTTCCTTGCGAGATGTGATGTG GTATTCAACTCATGTGACCATGTGTGACCAATCAAATTGCTGCAACATTA CTGGCTTTACAAGCTGAAGTTCTGACTCTGTCTGCTAGGGGGAGCTTGTG TNCTGGCTTTACAAGCTGAAGTTCTGACTCTGTCTGCTAGGTGGAGCTTG TGTCTAACCAAGCAGTGCATGTCCCATATTGTACAATTTCACCAGGAAAA GGAGGGAGTTTTAGAATAGGTGCCTTTCCGACGCTTGCTGCTTCTGGCTG TTGCTTAGTGCCTTTTGGAAATAACTTTTGTCTTAAGTAATGTTAGGGTG CTCTCTGTCAGCTTGCTACTCTCCCTAAGGTACTCCCTGCAGCAGAAAGC ACAAGATACTGTAACATTAAATGCAGAAATGTTCGCAGTGGTTTTATGTT TGTGGTTTTCTCGGTGAAGTCTTAACCGAGAACTTCAAAACCACTTCAAA ACCACCGCGAAAAGCGCTAGCGGTACTACTTAGCCTGACGAATGGCGCTC CTAGTGGCCAGCCGGTCCTGTGACCGCCATCCCCCTAGAGGGGTCAGTAA CCTCCTGCCGAGAGCTTGTGCAAATACAGGGTACGGTACTACTGTTTCAA ACGCAAACTCAAAACCACCGGGAACACTCCATTTTCTCCCTACCGCGAAA TTATATCCCCGCAAACATCTGCATTTACAGTATCCCAAACTTCCTCTAAC CTTCCTTGACCCTTATGTTCTATCCACTGCCTGAGACATGAAGGCCCCTC TGAGGTGGCTGCTTCGGCAAAAGACAGTGCCTGTTGTCTGTGTTGACAAA AATGCAAACTTGCGTGTCATGTTACTACTGTATGATCACCATTGTAACTG AAAAGAACTGTGGCATAGCTACTAATGCAGGCATTGCTAACTGTCTTCTT TGGCCACATGCTGGAATTGTTTTGCCAGTTTCCCAGCAAGGTTGCTGCCA ATGTCATATTTGATGTTTGTCAATAGTTTTCCACGTAACTCTGTTTGCTA GAGCGCTGAAACAAATATTTGTAGTTTGCTGGATGTAACGTTATGTCTGC AATGTGATTATTTATTTCATTCAGAGATTCTGTTTATGATATTTGAGCAC GGTGGTTGGCCAGTTCTTTCAAAGTCTTTTCTGTAAGGCACTCGCGCCAT GTAACAGTTAACGTCTTAAGACTTGTATCCATCACATTTCTTGTCTTGTT TCTTGTTCGGATATTTTCCTCCTTTGTTGTTCTAAAGACTAAAAATTATC ACTAAGATAAGAATCCTCTTTGTTTATGATAATGTGACCAAGATGTGTTT TAGACTCATACTTTTATTATAACATGGGGGTCTTAGGCTACCGAGTGGTA TTACGAGAGTTGACATCGCTACATGTTGATAACTTTTTGAAAACTATGTC TTCAGGTACAGAAATGTGTAGGGAAGAACAAGGTGGAACAATTAGTAGAA CTGGCTCAGAGCCAATGTCACAGGATTGGTATTGGGAGTGGTTGCAACAT CTGTTTATCATTGTCATATTTCTTACTGAGAGTTCAAACATTCACAAAGT TACATGGTTAAAACATGCTACAGGAAGAAGCTACATGTAATGTTATATCT GCCAGGACCAAACCAAGATGGGAGATTTGAGGATCATATGATGATGATTA TCTGTGATATTGTCAATGCTGAAGGACTGGGGCCATTTTGTAAAGTTCAC CAAATCTAAATTTTTTTAGTTTATATTAAGCTTTACGTGTTGAAATTTCA GGTGAAAATCTTCTTTGTAAAAAAGTACTGAAAACTTTTACTGTTACTTG ACCTTTGCTTGCACTTGACCTTCTGAACTTTCCAATATGGTGGCCACCTG TTAGGTACCCAGCATGCTTTGTGAATCCAACATGGCTGCTAACAAGTTGA GGGAGTGGTCGGATGTTTCCATGACGATGGAAGAATAGAACAGTGAGTAA AGAATCAGCGTTTTTGGTATTTAGATACCCAAGGAAACTTAATATGACTA TTATTGATAATTTTCTGTGAAATTTACGTTAGATTATGTACTGCTTGATG CAGGTTAATTATGAAATGTTCTGTGTACTTTGTTATTATAGAGAAGTCTT ATTTGAGTAAATTTGACGTCATCGATGTATTTGAATAGGTCAGAATAAAT ACAGCTGGAAAACCCAAGT

Coding sequence (CDS) from alignment at Sc0000003:506364..515032-

>Blg00843.5 ID=Blg00843.5|Name=Blg00843.5|organism=Branchiostoma lanceolatum|type=CDS|length=1002bp|location=Sequence derived from alignment at Sc0000003:506364..515032- (Branchiostoma lanceolatum)
ATGTCTGAGGTGCAGTCCGAGGAGAAGAAGGACCCCCCAGCGAGCGAGCC
GGGCGCCGTAAGCGGACACCACATCGTGCCGCCGCCCGGTCACCACGTGG
CCACGCCCGCCGACCACCACGCCCCAGCCCACCACGGCTACACGCACGGC
AACACCGACCACCATGGCATCATAGATCACCACGGCAACCTGGATCACCA
TGGCAACATTGATCACCATGGCAACGGGCATGGGTCATCTGCGCCTGGGC
ACTTCTTATATGGTTCAGGCCAAAACATCCTGACAGACATCCCGGGACTG
GGGGGAGACGAGGCCGAACCACAGAGGGAGGAAGAGCAACAGACACAACA
GCCGGCAGCAGCCTCTCCAGGGGAGGAGCAGCAGCAGGCGGAAGAGCCAC
TTGTGCGCTCGCCACAAGAGACAGAGGAAAATGTAGCGGCGCAGACAGAG
AGCGTGGTTCGTGACTTCCTGTTCCAGAGACACCAGCGCGAGCAGGCGCG
GGAATCCCAGGTCGGGGAGTGCACGCCCTCCATGCCCGAACTCACGCCCG
ACCTTAACCCACTCAGCCGCGAGAGCGAGGTCGGGCGGAAGCTGGCGATG
ATCGGGGACGAGATCGAGAACCGCTACGAGTCAGAGTTCAAGGCCATGAT
CAAGACGCTGCGGGTCACCCCGTCTACGGCGTACGAAGCCTTCGCTGGCG
TCGCTCGAAGGTTATTCCGTGACGGCATCAACTGGGGCAGAATAGCGGCG
CTGCTGTGCTTCGGGTACCGCATGGCGGTGGACGTGCTCGAGCGGGGGAT
CCCGGACTTCGTGCGGCAGATCATCAAGTACGTCGTGCAGTTCATCATCT
CCGAGCGGATAGCCAGGTGGATCGCTGAGCACGGCGGATGGAGAGGCGTC
CTGAGCTACACGCTAAACGAGGGGTTCCAGGCGCTGGGCACAGTCTTCGT
GGTCGCTGCAGTTACCGTCATCGCCGCCGTGTGGCTCTTCAGACGGTCAT
AG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00843.5Blg00843.5-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00843.5-exon-Sc0000003-1570713199:514725..515032Blg00843.5-exon-Sc0000003-1570713199:514725..515032Branchiostoma lanceolatumexon
Blg00843.5-exon-Sc0000003-1570713199:513858..514027Blg00843.5-exon-Sc0000003-1570713199:513858..514027Branchiostoma lanceolatumexon
Blg00843.5-exon-Sc0000003-1570713199:513581..513714Blg00843.5-exon-Sc0000003-1570713199:513581..513714Branchiostoma lanceolatumexon
Blg00843.5-exon-Sc0000003-1570713199:512823..512966Blg00843.5-exon-Sc0000003-1570713199:512823..512966Branchiostoma lanceolatumexon
Blg00843.5-exon-Sc0000003-1570713199:512238..512418Blg00843.5-exon-Sc0000003-1570713199:512238..512418Branchiostoma lanceolatumexon
Blg00843.5-exon-Sc0000003-1570713199:508471..511294Blg00843.5-exon-Sc0000003-1570713199:508471..511294Branchiostoma lanceolatumexon
Blg00843.5-exon-Sc0000003-1570713199:506364..508386Blg00843.5-exon-Sc0000003-1570713199:506364..508386Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000003genomeSc0000003:506364..515032 -
Properties
Property NameValue
GeneIDBlg00843