Blg00842.0 (mRNA) - B. lanceolatum

Overview
NameBlg00842.0
Unique NameBlg00842.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000003:5515359..5519689+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00842.0 ID=Blg00842.0|Name=Blg00842.0|organism=Branchiostoma lanceolatum|type=mRNA|length=4331bp|location=Sequence derived from alignment at Sc0000003:5515359..5519689+ (Branchiostoma lanceolatum)
ATGGCGGCACATGTAAACAATCATTCGTCCGTTACATCGTTGCTCAGCTG GTAAATATCATATTTTCTGTCTTCATAACTAGTGACATCTGAATTCTTGC GGATCAGGACATGTCTAATATACTTTTTGAACCGTTGTCGTGCTGTTTTT GTAGATATGTTTGTGTAATTAAGCAAACGCGCCCTTTAGAAAACCGTTGC TGTATAAACGTCAACTAATTTGATTTGATCAGTTTACTAAGACACTTAGC TTATTTTTTCTCCGTCTTCATCTTCTCAATCAAAAAATTCCAAATACAAT ATAAAACAACTGCTTACTTTTTCAATGACTTTGACACTTTGGTAGTCGTG GAATCTCTCTTCTGTGGGGTGTCTTTACAGCAGCGGTTTTAATAATAAAT TATTATGGAATTCGTTTGTTTTTAATGTTTATGTTTGAATCCATGGATTC CCGCCCACTCAAAGTTTAGATTTACATTGATTCAACTTTTCTAATGGTTC CTTCCTGTAGGGCAGTCCATGACTTGTGTCTCCGAGCAAAACTATTGTTT TATTGTGATGTTAGCAATCACATTTAGCATCCAAATTAGCTTTAGACTTT CTTAACCGTAAACGTAATATTACTGTCAGTCAGTCTTCACAGACTAGGAC AACTGTTGGGAAACAGATGAAAATACAAAACAAGAATTGCAACAAAAGTT GAAAATATTCAGAGAAATGATTGAGAGTTCAAAGAGAACATATTTACCAT ATTAGCTGTACTATAACCTGACGTCCAACTATATGTAAAAGAAATTTAAG AAAAGCATCACTCAAACCAGAAACAGAAAAAGTCTGTAGATGTGGGATTG AAAATGTTTTCAATATACAGTATTTGTCTTCTTCTCTGACACTATCAGGT CTTTGCGGTCATTGGTGGCCAACTTCAGTTGCCATGCCAACCATGTCCAC ACCCTTCCTCCCAACATCAAGGACAAACTGGTCCATCTCATGAGCAAGAG GGGGACCATCAAGGATGACAACATTGGCAAGGTCATCTAAAAATAGTGAC GTTACTATCAGTCGTAAAATGGCCATCTTCTTGCCAGTTGCTGAGAAAAT TGAACGGAAAAAACTGACTTAGGGGATCATTACATTCTGACCTATGTGGA CAGGTTGTTACTATATAGACAGGAATGTTTGTCAATTGGAAAACCACCCA AAAGTGGTCAAATTGCCCAGGTGGTCCTTATGTAGTGTGGTCAGTAGTAC AAGTTTGAACTAGATGTAAATGTATGTGTGTATGGCTATCTGGCAAGCAT GTACACATGCGTCCAAGTATAGTCTAATCTTGATAATTTAAGTTGTCATT AACATTCACATGCAAGTAGCTGATGACATACAATGTAAAGGTACACAATC AATATTTTGCTGTTTTTTTAATGATGTGTAACATTAAACATCTGACACAC ATTAACAGGTAGTTCACCAGAAGATGCGAGAGTTGGACCTGAGTGAGAGT GAGGTCAGTGACCTGAGTCTGGAGCAGCTGTCCGTGTGCCGTAACCTCCG CAAGATTGACCTGAACGCTGTGAAGGGGAACACCACAACGGTCACAACTG CAGGTGGGGGTAAATCATATGTTAAGGCCCATTCAACAAAGGAATTGGAG ACCTAAGAACAGCAAAGAAACTCAGAGAGCTACGGCAGCTCGCAGGAAAG AAGACACAGTGGAAAGAAATGAAGAAAGACTGAATGCAGCCAGAGGCTGT TTCTACAACCTCTGAGCCGCAGAACACAGTGGATCATCATCATCATCAAG GCCCATTCCACAGTACTAGTAGATACAAGTGGCTAATGTAGTTCTCCACT GTTTGACTCCTTTTCATGTGGGATTTATTTCCCTAAGACAAGTAGACAAA GTACTCATATAGAGTCATAAACCACAAACGTGTACCAATATATACTGTTG ACATCTTGCAATATAATATGTCAAAATTGTGAATCCAGATTTTTCTCAAA ATTCAATACAGGCTTTCCCTATGATGTCATTTGCGCCATGTTCAGATTAC AGTACACACGTCTCTCAACCACGCTGATATTCTGCCGTTTGATCAAATTA CCTGCCAACATGGTCGCCGAGGGATTCAAATTTTTATCACTATGAGTATG ACGTCAAGGAAAAGCTATTGCTGGCAGCTATAGGATCAATCGGTTTTCCA AAGTAATGAAGACATGAAATTCTATGTATACATGTATGGTACTTGAAGTT TTAATGTTTGTCTGGTTTAGGTTATAATGTGTTTAATCAAAAACAATTTT TGACATATCATCCACTACTGCATAAGATTTTTGAAAGATAGAAGAGAATT TAAGACCTTTTTATATGTTCTACCCCCCATCCCCAGGAATCATCTCGTTG GTACGTTCCTGTCACCTGTTGCAGGTGGTTCATCTGCGTAGGTGTATAGA GATAACGGACGACGCCATCGTAGCTCTGTCCGAGAACTGTCGCCAGCTGA TGTGCCTCAACATCGGGGGCTGCGCCAAGATCACAGACCGGTCCTTAGAG GCACTGGGACAGAACTCCAGGATGCTGAGAAGTATCAACTTTGGACACAC TAAGGTTAGGTTTAGATCTGAGGCTATTAGCTAGCAGGGTGTCAGGGTGT CTTCTGGACGCCTCCTTCACTAACAAAACAATGAAATGAGTCACCTAATC CTTTTGCAGAGGACATGCTGTTTCCTGGTATTACATGCACTTGAACATTG TGTTCCACATACACACACACTGCAACTGTTGTTTTTTGCCATTAATGACT GTTGTATCACCAAGAAATGGATGGAGCAAGTGCATTGTGGAAAGCAGGTG CTTTCTTAATTGCCTTTGCCATTATTCTTAATCATGTGTCATAGTATGGC AAAGATGATTAACAGACTATTCCATAAAATGGTCTGCCTTCATACAGGTC ACAGATGATGGCGTCATCAGCTTGGCTACTGGGAAATGCAGACAGTGTCT GACGGTGGGTGAAGATGTCATTGTCTGTGGTTGAAAATTTGTACATGTAT TCTAAAAACGAAATTTACTTTTCAAGTCTTAGATCTAGAGATCCTGCATT GTTGGTATCAAACCGCTTCCAACACTTATTACAGTTTCCAAGGAGGTAAT GGAATAAGATGAAAGCAACTGGGGCCAACTTTGATGTTTTCAAAGTGTTC TCCCTCTTTATGTTTTCATAATGGAAATATTGTATAAAGTTAAGAGTGTA CAGTTCAGTTCATCTCTGTGCGGTGACACAAAGGTCTCCACAGGCCCCTG TCGAGCATGACAACGTGGAGTTCATAATCTTGAAGACCCAAATACTCTTC AGTCACCTTCTTGAGTGTCAAAGATGGGTGACCATGCCTATGATTCTCAT CCATTTTCCAAAGAAGAACCATGTCAGCCATTTTCTCTTTTGTACAATGC ATCTAAATCCCCCTTTTCCTGCCCCTGTAGGAAGTGCACATGGATGGCTG CCAGCTGCTGACGGATGATGCAGTGGAGGTGATCATGGAGAGCTGTCCTC GCATCTCCATCCTCATCTTCCACAGCTGCCCAAAACTAACCGGTACGTCT AAGCAATCAGTGAAACACCTTACCTTACCTTAAATAGATCCTCTTGGCGG CAAACTTTCTTATTCCAAAGGTCCCAGTTTTGTGCTGCTTCTGCCATATC CTGAAGAGAATTTAATCCGAGTTTCTTCCCATCATTGTGTAATGTTCGTC GAAGAGTGATTGGTGCAACAAGTTGAGGGAAATAGCTTCTATAACCTTTG ATATTTTTTGTACCAGGATTTGCTTGATTGTTTGGATCTGAAGTTGTAAC TCTTTAATTGTAAGTGCTCATCAAGGTTAGAAAAGTCACCCTAGCAGCTG TCTTTCAAACTGCAGATTATAGGACTGTTATTTCTATAGAATTCTGAAGA AACTAGATTGTGCTCTTTTGAAAGAAGCTGTATCTGTGTGGAGTATATTG TAAATTCATTTCCTTTCATGTTGGTTTGATTTTCATGGTAGGTCAGGGAA AAGGTTTTTTCTGCATTTCAAATTTGGGGCTGAAACAATTCTGTAGCACA GTAGTCATGCAAGGGAGACATATTCCTGGTGTCATGAATTTGTGGTGAGG TCACCATTAAAACAAAACCTGTAGTTTTGTTACACAAGTTATGAAACCAA ACACTACATATGTTTGGCCAATTAGGCTTATTGATCTTCTCCTCTTTCCC CCAGACCGTTCCAGAGTGGCTCTGGAAGAGTTGAGTGGACCCAACTCCAA GATGAAGCAAGTGACTTGGACCATCTACTAA

Coding sequence (CDS) from alignment at Sc0000003:5515359..5519689+

>Blg00842.0 ID=Blg00842.0|Name=Blg00842.0|organism=Branchiostoma lanceolatum|type=CDS|length=792bp|location=Sequence derived from alignment at Sc0000003:5515359..5519689+ (Branchiostoma lanceolatum)
ATGGCGGCACATGTAAACAATCATTCGTCCGTTACATCGTTGCTCAGCTG
GTCTTTGCGGTCATTGGTGGCCAACTTCAGTTGCCATGCCAACCATGTCC
ACACCCTTCCTCCCAACATCAAGGACAAACTGGTCCATCTCATGAGCAAG
AGGGGGACCATCAAGGATGACAACATTGGCAAGGTAGTTCACCAGAAGAT
GCGAGAGTTGGACCTGAGTGAGAGTGAGGTCAGTGACCTGAGTCTGGAGC
AGCTGTCCGTGTGCCGTAACCTCCGCAAGATTGACCTGAACGCTGTGAAG
GGGAACACCACAACGGTCACAACTGCAGGAATCATCTCGTTGGTACGTTC
CTGTCACCTGTTGCAGGTGGTTCATCTGCGTAGGTGTATAGAGATAACGG
ACGACGCCATCGTAGCTCTGTCCGAGAACTGTCGCCAGCTGATGTGCCTC
AACATCGGGGGCTGCGCCAAGATCACAGACCGGTCCTTAGAGGCACTGGG
ACAGAACTCCAGGATGCTGAGAAGTATCAACTTTGGACACACTAAGGTCA
CAGATGATGGCGTCATCAGCTTGGCTACTGGGAAATGCAGACAGTGTCTG
ACGGAAGTGCACATGGATGGCTGCCAGCTGCTGACGGATGATGCAGTGGA
GGTGATCATGGAGAGCTGTCCTCGCATCTCCATCCTCATCTTCCACAGCT
GCCCAAAACTAACCGACCGTTCCAGAGTGGCTCTGGAAGAGTTGAGTGGA
CCCAACTCCAAGATGAAGCAAGTGACTTGGACCATCTACTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00842.0-exon-Sc0000003-1570713199:5515359..5515408Blg00842.0-exon-Sc0000003-1570713199:5515359..5515408Branchiostoma lanceolatumexon
Blg00842.0-exon-Sc0000003-1570713199:5516257..5516389Blg00842.0-exon-Sc0000003-1570713199:5516257..5516389Branchiostoma lanceolatumexon
Blg00842.0-exon-Sc0000003-1570713199:5516817..5516961Blg00842.0-exon-Sc0000003-1570713199:5516817..5516961Branchiostoma lanceolatumexon
Blg00842.0-exon-Sc0000003-1570713199:5517745..5517962Blg00842.0-exon-Sc0000003-1570713199:5517745..5517962Branchiostoma lanceolatumexon
Blg00842.0-exon-Sc0000003-1570713199:5518306..5518362Blg00842.0-exon-Sc0000003-1570713199:5518306..5518362Branchiostoma lanceolatumexon
Blg00842.0-exon-Sc0000003-1570713199:5518839..5518950Blg00842.0-exon-Sc0000003-1570713199:5518839..5518950Branchiostoma lanceolatumexon
Blg00842.0-exon-Sc0000003-1570713199:5519613..5519689Blg00842.0-exon-Sc0000003-1570713199:5519613..5519689Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00842.0Blg00842.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000003genomeSc0000003:5515359..5519689 +
Properties
Property NameValue
GeneIDBlg00842