Blg00675.5 (mRNA) - B. lanceolatum

Overview
NameBlg00675.5
Unique NameBlg00675.5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000003:4075636..4081071-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00675.5 ID=Blg00675.5|Name=Blg00675.5|organism=Branchiostoma lanceolatum|type=mRNA|length=5436bp|location=Sequence derived from alignment at Sc0000003:4075636..4081071- (Branchiostoma lanceolatum)
GAACCACTTGCCCTGACAGTGCTCAGGCAAACATGTACAGCACAGGTATG GACGACTCTGACAAGGAGGTTAGTATACACATTCAATGATTTGAAGCTTT TCTGTCTTGATATGAGGTCGGAACAATTAAACGTATTGTTTCTCGGTTTG GGAAGGACTTGAACGTTGTCCGGTTTCAAGCCAAATTTCTGCCCCTGCCA AATATTAGCCCCAACACTGCCAAATATTAGCCCCAGTATACCTGAGGGGA AAGAAGTGGGCCGTGGTAATTTTCGAAGTGGGCCGTGGTAATTTTCAAGC AGAAACGAAGTCTGAGCGGATTTTACTTTGTGCACCACAGTTTGAGGATG CTTGCTAGTTCCATAACTTAGGCAGAAAGACACTGCACCAGCATGCCTGT CCTTTAGTTCAATGAGAGGAAATATTGAATCTGACCACTAGATATTCACG TGCACCCCCTCTAAAACTGAGCTCGCCATGCATTAGGCAAATCTGGCCCT AAGGCTAACATAATTATTTTCAATTTCAATTCTAATCTAATTTTCTTATT AAATCAGCGTGAAGAAGAGTAAAAGACAGCGTTTACAACTGAATTGCGTT GGTATTTCTGAAGAATCTGTCTTTTTTTAGACGAAGTCCTTTCAAGGTCT CGAAGCCAAACTGGATGACGTAGTTGCCGAGGTGAAGCATATCAACAGCT ATCTGGAGAGCAGCAGTGGGCAGAAATGGTGCACCAGGAAACCGCCGGGG CAGGTAAAATGTGGACTACTTGCTTTTGAGGCCACGCACACCAGTTTGTT TTGTGGCTTCTTCGAAACGGATTTGAACTAATCTCAAGCAGATCTACACG GGGCGCGAAAATCGTATATGCTAGCCAGAGAAGGTCTCAGCCAGATAAGC TTATCTGGCTGACTGGACCTTCTCTGGCTAGCATATACGATTTTCGCGCC CCGTGTAGATCTGCTTGGAGATTAGTTCAAATCCGTTTCGAAGAAGCAAC AAAACAAACTCATCATATTGTATGAAGCTGGTGTGTTATGCCGACCGGCG GCAATACCGGCTATGTAAATACAGATACAGATGTTGGACTGGTATACTGA ACAGATGCAACGGGCTAAGGACTGTACACACATTTTTACTCAATGAATGA AGACCTTTATTGCACATTTCTGCCACACTTGGCTAAGTACAGGTCACAAC AAAAGATAATACAGGTACAGTTAGCGGATACAAAAGAATATGACTATCAT TAAATAAATTCTACTTCTCCTCGCTTTTCGGTTATAGTAGATATAAAAGA ACAGACGTGTTTTTCAATGGGAGGTTTGTCTAGTCGCATTAGAAATATGA ATTTTTGAACAGTACTTAAATGTGTGAAGTAGGGAAATAGGTTTTCTATA TACAAGTAGCAGATTGAAGTTTTCATTTCAGCCTTATAACTTTCTTGCTA ATTTTGTCTACCCCTCCCCAGATCCGTGTGCTGATCAACCCAACCCTGTT CTCGCTGAGGGATGTGGACACCGTCAAGCAGGAGTTCTCGGCGGAACTCT GGTTTGAGATCTTCTACAAGGACCCGCTACTCAAGGGGATTACAAATAGA GATGTAAGAGAGATAAGGTTATTGACAGCGCCAGTTCATTTTTTCGTTCT TTGAAAAATGAAGATTACTTTTTTAAATGCACAATGAAAAATAAGTGTTG GGTTCTTTTACGGGCACCTGATGAGGCCAACGCCTGAACCCCCTCGCTTT ACGTCACCATCCGAAGTGACGAATACAATCCCTTATAAATCTTTACAACA TGTCCGAGGTGGGGTCGAGCTTGGGATCGAACACCTGCCCACAGATTTGC GGAAGTTGATCCATATGGACAAGTAACGAAGAATGTGGTCTTAATAATAG ACGTGACTAAGTATGTTTTGTTTCAGCACGTAGACTGGGACAACCAGTGG GACCCTCGGATCGAGCTGCGGAACACGGTAACCCTAGAAACCGTGACGCA ACAGAACCTGATCCCGGTGGTCGGGGAGGACGTTCCCATCGTGCACGAGT TCAGGAAGGTTCGGGCGACCTTCAAGGCTGACATGGACCTCACCGACTTC CCTGTCGATCACCAGGTGTATTCTTGTAAGCCAATAGACCGATCCCAAAG CCACGCCCCCTGTTCGATTTCGAATAGAACAGGGGGTTCTATGGGTCTTC TATTTGTTCGATATGGTGTTCGACAGGATCGGTCTATTCACATTTTCAAA TGCGTACCTGTAACCGCTGTTCATTGTGGGCTAAGGTCAAAGTTTAGACC ACAATGCAACACGACTGCATACGCGCATTTTGAAGCTGACATGGCTTATT GCGTTATTGATTCTAGGATTCACCGTTTTTCTTTTTACTTGAGTTGAAAA AGAGGAAAATATTATGTCCTGTTCTTGGCACATCCTCGAAATGTTCTTAT TCTGGTACGAATAATTGAAGCCACACATTTTTGTGACAGGTTTTCATTTT CAAAAGATATTAACTAGCTTCCTAGATCCTATGTCGACTTTGTGGCTTCA GTGACAGCCTTTGGGACTTTTCGACAAGCAAAGTGAAAAGTGTACCATGG CTTAACGTCCCGTCCCAAGGCCGGATCACGACTCTTTCTGGAAGCGAACT CCCGTCCAGGCCACTGTACTATGCAGACTACATTTTCATCCTTGATGTTG TGAATTATTCTTTCAGAAACTGACTGTCCAACTGATGTCAGGCTGGATGA CAAAAAAGGTTTTGCTGAGGAAGAACTACGGATCTACTGACACGATTACT GCCGACGACTTTGCAGGTAGGTGGCACTGGTGGCGTAAGGGCAGTTTGGC CCAGAACACAGACGTCATGGGTTCGAATCCTGACGTGCCCCGTTGACCTT GTGCCCTTTGGAAAGGCACTTTACACAAATTTCCTCACTTTAAAATGAGT TACTAGGCGACTACAGAAAGGGCATTTTTGCTTGTTATATTATATATTCA TTATATATACTAGAAAAGGCTTGTTATCATATATACTAGCCGTTTCTAGT ATATATAATATAACAAGCAAAAAAACCCTTTCTGTAGTCGACACGGCTAA TGAGTAGCTAGCTTACCTTAGCTAATCTAGGCTAGGGACGTCCCTTAATA GGACGTTAAATGGGGGTCCCGGTGTTGAGGGGAACGATTGTAAGGCAAAA AGTAACCCCCGAATCCCTATCGCTTTTCAAATTGGTATCAACAAATGTCG ACTGTGTAGCCTTAACGTCGTTCTTTTACCTCATTCAACAGATGCTGACC AGTGGAAACTGAACGAATATCTGGAGTGCAAACCTGGCATCAAGGGGAAC AAGCAGTCCAAAACATTCGGAGAGTACCCCATGTACTACATCACCGCGCA TGTTCAGAGGAAGACGGCTTTCTACATGTGGAACACGGTACTCATCTTGG TAAGTCTGATGTCTTTTTAATCTCCAAGCAGATCTAACGGTGGCAAAGAC CATATCCAACTGGCAAAAGGAGTTTTCATTGCCGGTGGCTGTAAAAACTA ATTTTGCCAGTTGGATACGGTCTCTGACACCATTAGATCTGCTTGGAGAT TAACATATTTTACCTAATAGTCCCATTGTCATGTTTGAGGGTCGAAGATC ATAGTAGCTTCAGCACACATTCGCTCTTTCCAGGCTCCCTACTTGTATGA ATCAAGCAACGGTCCAGACATACACAATTCCTCAGTGGAGGTTTAAAAAA CTGATAAAACAGCAATTTGGTGCCACTATTATCATCTGTTGGACAGGAAG TATCGCATTGCAGTATGGGTAAGGGAGTGATGTCTGCCATCTCTGATTGC CTTGCTGTTTTTTTCTTCACAGTTTGTCATCACGGCCCTCTCCTTTACCG TGTTCTCTATTAAACCAGAAGAACACAAAGACCGTCTCGGTATCATCTTC ACTCTCCTGCTCACGACGGTAGCCTTCAAGCTGGTGGTGTCCCAGTATCT TCCCACCGTCTCCTACCTCACTCTGCTGGTAAGTGAACAATGCAAGTCTT TCTACCTTACCCCAGATTTCGTCGTTACCTCTTTTTAATCTTTTTTCGAC TTTAGAACCATGACGATGGTGCGTCAACGTCTATGCATATCGTTTTTTCA GTGTGATACCTACTATGTCTATCACCTCATGGGGCAAGACCTAGATAGGG TGCTCATCTTCTATGATACCATCTTAACTAATATACAATTTAAACTTTAC CACTGGATAAATTGTATGTAAGTACTGATTAGTTCTGCTGGCTCATTTTA GTGACGCTGAAGAAGGGTGATGGATGTCACCCAAAACGTCCGGAAATAAT CTCCGTAATCTATCCAGTAATAGACTCGGTTTAAATTGTATATTCAGTTT TGTTAACCTGGATGTCTAACAGTCATCAAAATATCATCTTAAATTGATCA TAGGACAAGTACGTGTTGGGGTGTATCATCTTCCAGTGCAGCGTGGCTGT AGAGAACACTTTAGCCTCGGTCTTTAAGGACGGGTACAGTGCATGGGTGT TTGACAGTGTCTGTGCAGCCATATTTGCGACTGTGGTCCTCTTAGCGCAC CTGGTCTTTGGGAGAATCATATGGATGAAGGTATGTACACAGACGGATAG AAGAGCAGATTTAGATGTTTAAATGGAGGGTCTGTATGGGGGATACTGAC AACGCTAACGGCAAATTGACCTGTTATTGTGAAATGGGTGCCATTGCTGA TTTCCTTTGATGATCTTTGATATCTTGTGTAGATTTTCCCTCGATCTGGA ATGTTACATCCTGGGCTACTTTCAATGTAAAGGATTCTGAAGAGTTGCAG ACAAGATGTGCTTTTTCACAAGTGCTGTCAATTCTGATTTGGTGCGTGGG TGCAAATGGCAGTTGACTGCATGTACATGTTCACTTTCTTTACTCTACTA GATGAACAAGAACAACAGAAAACTGAGAGAGATAGAAGAGAAGTTCAAGG TAAATACTTCTCTTTGGTAAATGTTGATTAATGTTGACACAATTAAACAC TGGAAATCTAAACTGGATCCAGGGACAACAGCATTATGATATTTTTTTTA ACGCTTGAAAATTATTCAAATATACATAACTTTATTGCACAACAATTGTA CGAGGTAAAAAGTATGGCATTCACTGGCACATAGATAACACTCTATTAGG CTAATCAGTCTATCTTATACAATATGGCTAAATGAACCCGCGTTGTTTCT TACTTACCAACAGCGTCTGAGTGAACGTGTGGACAAGGCCTACGAGGAGC GTGACATGACGCAACAGGGCAGCACCAAGACCAACATCATCATAAAGGGC TTTACTGATGAGGAGGTTCAGGAGGTGATGGTTGTCATCATTTGACACTA ACTCAATTCAAACAAACACGCACATACACACACACA

Coding sequence (CDS) from alignment at Sc0000003:4075636..4081071-

>Blg00675.5 ID=Blg00675.5|Name=Blg00675.5|organism=Branchiostoma lanceolatum|type=CDS|length=1251bp|location=Sequence derived from alignment at Sc0000003:4075636..4081071- (Branchiostoma lanceolatum)
ATGTACAGCACAGGTATGGACGACTCTGACAAGGAGACGAAGTCCTTTCA
AGGTCTCGAAGCCAAACTGGATGACGTAGTTGCCGAGGTGAAGCATATCA
ACAGCTATCTGGAGAGCAGCAGTGGGCAGAAATGGTGCACCAGGAAACCG
CCGGGGCAGATCCGTGTGCTGATCAACCCAACCCTGTTCTCGCTGAGGGA
TGTGGACACCGTCAAGCAGGAGTTCTCGGCGGAACTCTGGTTTGAGATCT
TCTACAAGGACCCGCTACTCAAGGGGATTACAAATAGAGATCACGTAGAC
TGGGACAACCAGTGGGACCCTCGGATCGAGCTGCGGAACACGGTAACCCT
AGAAACCGTGACGCAACAGAACCTGATCCCGGTGGTCGGGGAGGACGTTC
CCATCGTGCACGAGTTCAGGAAGGTTCGGGCGACCTTCAAGGCTGACATG
GACCTCACCGACTTCCCTGTCGATCACCAGAAACTGACTGTCCAACTGAT
GTCAGGCTGGATGACAAAAAAGGTTTTGCTGAGGAAGAACTACGGATCTA
CTGACACGATTACTGCCGACGACTTTGCAGATGCTGACCAGTGGAAACTG
AACGAATATCTGGAGTGCAAACCTGGCATCAAGGGGAACAAGCAGTCCAA
AACATTCGGAGAGTACCCCATGTACTACATCACCGCGCATGTTCAGAGGA
AGACGGCTTTCTACATGTGGAACACGGTACTCATCTTGTTTGTCATCACG
GCCCTCTCCTTTACCGTGTTCTCTATTAAACCAGAAGAACACAAAGACCG
TCTCGGTATCATCTTCACTCTCCTGCTCACGACGGTAGCCTTCAAGCTGG
TGGTGTCCCAGTATCTTCCCACCGTCTCCTACCTCACTCTGCTGGACAAG
TACGTGTTGGGGTGTATCATCTTCCAGTGCAGCGTGGCTGTAGAGAACAC
TTTAGCCTCGGTCTTTAAGGACGGGTACAGTGCATGGGTGTTTGACAGTG
TCTGTGCAGCCATATTTGCGACTGTGGTCCTCTTAGCGCACCTGGTCTTT
GGGAGAATCATATGGATGAAGATGAACAAGAACAACAGAAAACTGAGAGA
GATAGAAGAGAAGTTCAAGCGTCTGAGTGAACGTGTGGACAAGGCCTACG
AGGAGCGTGACATGACGCAACAGGGCAGCACCAAGACCAACATCATCATA
AAGGGCTTTACTGATGAGGAGGTTCAGGAGGTGATGGTTGTCATCATTTG
A
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00675.5Blg00675.5-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00675.5-exon-Sc0000003-1570713199:4081004..4081071Blg00675.5-exon-Sc0000003-1570713199:4081004..4081071Branchiostoma lanceolatumexon
Blg00675.5-exon-Sc0000003-1570713199:4080319..4080441Blg00675.5-exon-Sc0000003-1570713199:4080319..4080441Branchiostoma lanceolatumexon
Blg00675.5-exon-Sc0000003-1570713199:4079469..4079600Blg00675.5-exon-Sc0000003-1570713199:4079469..4079600Branchiostoma lanceolatumexon
Blg00675.5-exon-Sc0000003-1570713199:4078957..4079145Blg00675.5-exon-Sc0000003-1570713199:4078957..4079145Branchiostoma lanceolatumexon
Blg00675.5-exon-Sc0000003-1570713199:4078256..4078355Blg00675.5-exon-Sc0000003-1570713199:4078256..4078355Branchiostoma lanceolatumexon
Blg00675.5-exon-Sc0000003-1570713199:4077623..4077780Blg00675.5-exon-Sc0000003-1570713199:4077623..4077780Branchiostoma lanceolatumexon
Blg00675.5-exon-Sc0000003-1570713199:4077044..4077199Blg00675.5-exon-Sc0000003-1570713199:4077044..4077199Branchiostoma lanceolatumexon
Blg00675.5-exon-Sc0000003-1570713199:4076442..4076618Blg00675.5-exon-Sc0000003-1570713199:4076442..4076618Branchiostoma lanceolatumexon
Blg00675.5-exon-Sc0000003-1570713199:4076073..4076120Blg00675.5-exon-Sc0000003-1570713199:4076073..4076120Branchiostoma lanceolatumexon
Blg00675.5-exon-Sc0000003-1570713199:4075636..4075808Blg00675.5-exon-Sc0000003-1570713199:4075636..4075808Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000003genomeSc0000003:4075636..4081071 -
Properties
Property NameValue
GeneIDBlg00675