|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000003:2444693..2450421+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >Blg00642.0 ID=Blg00642.0|Name=Blg00642.0|organism=Branchiostoma lanceolatum|type=mRNA|length=5729bp|location=Sequence derived from alignment at Sc0000003:2444693..2450421+ (Branchiostoma lanceolatum)
ATGACTGACTGGAATTTTGGAAGTAGGTCATGGAAATAGATTTTATCCAT
TATGCAATAATAAATATTGATTGAATAATTTGTAGTTTGTAATTGGAAGC
TGTCCAATTCACTCCTCATTTAATTTTCATCATAATTTATTACAATAAGA
AAATGATCATTGAGCTTGATCAGTACTAGTCGTAACACTGTGACACTGGA
TGTGCAAATTGGATAATTATGTGTTTACATGTACTATATTACATGGTGTT
CAAGAAAAAAGGACACAACTTAGAAAATAAGACATAATGTGTTTTTTTTC
TGTCATCATGATGGTGATTATGATATTTAATATCTTTTTGTGTATCAGGT
GATGATGAGGATTTTGGGATGGCGCCAGGCTGGAGCAGGTTTGAAGTCAG
TCCGTCAGCACACTGGGCGATAGAATGTCGGCAAAAAGATGATGGAGCAG
GGCACACCCTCCCGCTGCCCCCGAAGACCGACCCCGCCCCACTCTCCATT
ATGGATTCGAAGGGAACAGGTGGGAATAACATAATCAGTCTTTGATTGAT
AGTGCACCACAGATATTCACATCTAGTATTTAAGGACATTGTAGCATCAT
ACTTAGTATCATCTGTGATCATGATTGATTCCTAATTACGTCCAGCACAC
TTTCTTCATCACAATGTGCTGAAAAGGAAGCAGTATTCTTAAATGGTTGA
ATGAATGTGTGGTCTTCTCTTAAGACTCTGTTATACTCATCGTGATATCT
CTTGTAGAATTTAAGCAGATGTTGGACACCATTCTCAGCCGGCTGGATGA
GACAGATGTAAGGCTGCTTCTCCGGGTGTGGTCTGCACGTACTGGTAAAC
AGGAAAGTCGAGGGAGTGAGGTGCCAGCTGACTTGATGAAGGACATGATG
AAGAGTGAATACATCACAGCTGGTATGTACCCAGTTTTCTTGATTGTCCA
CTAACAGTAACTGCATTATAATTGCAGATGTTGCTCAGATGATTTTGCTC
AATCTTCAAGTCAACTTGTCTTCTAAAGTTAGACTGTTTTGCCATCTCAG
AGGACCTCGGAATGCTTGAGAAGGACATGATGGCTGCTGGGATCAGCTTT
CCTGCTATTGTACGAGACATTCCAGGTTAGCTTTAACTTTGACGCTTTGA
CATACTGATCACAGATGGAACAAGAGCCTGAAGACCCCAAATCTTCATGA
AATTTGTTTTATACATGGTGTTTTTTATTTGCCCAAGCTATAGCTATTTG
TTGTTGCTGCTTTATTGTTGTTGCTGTTTTATGTGCCATAGGTTGCTTGG
GGAATTCTTACCCCAGATTCGAACCCAACAGTTGCTAGCAGTCATAGTAT
GCCTACAATGGACATATAGATTTTCCTCATCACTTTTGCAAATTAAGTCC
CAATTTGCATAATTTGCAATTCATTGTATTTATCTCTGTCAAAGCTACCT
GCATAGCAAATAACATGAAAAACTGTTGCTCCCTTCTTCTGATCAGTGAT
TCTCTTAGAAGATTTTGACAAATATGCTATTGCAGTTCCAGTGTCACATA
CCAGGGGGCCCAAAATCAACCTTGACCTTTTTCCTCCCAACACCTAACCA
CATACCAAATGTCCTTACAATCCATATAGACGTTTTCAGTTATGCTGAGG
CACAAACATACACACACGCAAACACACTCAAAACAATACCATGAAAAAGT
ATTTTTTCGTGGAGATAATAAATGCTGCATGCAATTGTACAAATATCAAA
GTATCCATGTATGTGATCTCTCTCTCTATTTATACACAAGATAGCAACAA
GGATCAAAGGATGAGCATTGTGTTGAGAAAGCATCAATTTGACCTTTCAC
TGTCCATGGATATATACATGTACAGTGTACAACCCTCCTTAGAATCTAAG
GAGGGTCATGTATGTTAGATTCCTCATTATGATGAATGACATGGATCTCT
TTCTCTTATAAAATAAATTAACTTAAAGCTACTGGTTGTCTGGTAAGCAC
TACAAAGCTTTAAAACATTGATCAGTCAGTTTTTTATTTCTCTTTTTTAT
TCATTTTTGTCTTGTCTTCAAGTTGGCAGAGTGGTCAGCAAAAGTGTAAA
ATATCTTTGACTTTAACTCAACAACTGTCAAATAATGACTGTCCAAAAAA
TCTATTTTCTAATGTTGATGCCAATGTTTTGTAGATGTACCAGATGAGTT
GAAGTACACAAGGACAGTAGAGTCTGCAGTAGGACCCACAGGTGGAGAGT
TGGAGATTCCCGGTTTTGTCAAACTCATTGTGCCACCAGACGTCCTTCAG
CGAGACACATTGATAACCATCTCCACTGTAGATGTTGCTGCTATTCTAAG
GGATCCTGAAAGTGCAAACTGGACCTCCGGCTACCCCTGGTCTCTGGGTG
AGGACGCCTGTCCACGTGAGCTACTGGATCAGGTGCTGTTCTCCCCAGCT
GTGGACGTCAACCTACACGGTGCACAGCTGAATGGGCCAGTGGAGGTGCA
GACATGGCGGCCTCCAGGTTCTGAAAGGATGAAGTTTCTTGTGCTGAAGC
ATCATAATGGAGAAGGTTGGACAAATATTACAGCTTCAACGCTGTACCAG
GTGTATTCAAATAAGATATCTCTTTTTTTGCAATCATTCAGTCCTGTGAT
TACCGAGTGGGCCCCCGTGGAAAAGGTAGTCTCAGTAGGAAAGATGATGG
TTGGTGCGTTGTCCTCAAGAACTCTCGAACTCTGCCGGTTTTCATCATAC
ATAAACCCCAGTCTAGAAGATGTGCAATTCTACGTTGTCTGTAGAGACAA
GAGGGTCGAGACAGATGACTATCTCCCAAGCTTCACTCAATGTGGAGGCA
ACGCAGCAATGTTCTCTCTTTTCCATGGGGACATACTTGACATTGCAGTT
AGTGTCCGAGGAGGACAGGACCAATCCAAGCAGATGGAACTACAGTCCGA
GCAGTGCCGTGATAAAAAGGGCCAGAACGTTCAAATGTTGCTGGACAGAC
CTAATGGAAACCGTGTCAAGGGCGAAGTGGATGTCAAGAAAGTTCAAGTG
CCGTCAAATCGGACTGCTTGTCAGTTCATTTTCAAGGAGGTAAGGGGTGA
TGTAAGCTGGTGATTGTGTTCAGAAATGTATTTTTTTTATTGAACAATAT
CTATATCATTCTGTCAAATGCCAGAGTGACTGCAACTGAATTATTCCCAA
ACTGAGTATGAAATGCTGAGTATTGTCTCAGAACTATCAGAGTGTTCATG
ATCATGATAATGACCAAACAATATAATTGGCATTACAGTTTTCAGCACTC
AACATGCCTTCCCTAAAATGACACAAATGACTAGAATGTTAGGCATAAAT
GACTAGCAGTTACAAATTGTTAGTACTATAATCTCATCATGTTAACCTCT
TGCGTATTTCCTTCTTCAGGAAGGTGATATCTTACAAAGTAAGTTACATT
ATTTCCAGTCTAATGGTATTAAAAGCTAACTTGTTATTATAAGTCTGAAT
GCATATTGAACAATGAAATTCTAATATTGAATTGGAATGAAATCTCAGTC
CTTTCCTCCTCCTCACAGGAAGATAACATTACTTTCCATACCATTATCTA
TGATTGTCAATGTCCATTTTGTCATTGGATCCATTCTTGTTTGTTGTACA
ATGTATGAGAAAGTTATTGCCAGAGCCAGTCAGCCATATGCATGGAATTG
ATACTATTTAGGTCACTACAAGAGAGACAGCACCACTGAAGAATCTGACC
GCACCCAATCAACAACCACAGAACTGGTGGAGTCTGTGAGGCAAAACCTG
GCTGTAACAAACATTACAGGTATGTGTACTGTCTTTATCAAACCTGATAC
TTTGTTGGTTGACTGCTTTTCCTGGTTATGTGACAAAATGTGTTTTTTAC
CAATTGTTTTCACCGGGTTGTCAGGAAAGAAATTCAGATATGAACAGGTA
TTATATATAATATATATATGTATGTATGTGTGTGACTGTGTGTGTGTGTG
TGCATGTATGTTTATTGTATATCAGATTTACCAGATTGTAAGAACATTCG
TGTCTATGTCTCTTCACGTAGAAGGTGACAGAAAGAAGGATGTCCTGCCA
GCTGAAACATCCCGACCTCAAGCTGGGCCTGGTGACAGCAGAAGTGACTC
CATTGTTAGAGGTAGGAATTAGACATTAGGCCACAACAAGTTAATTGCAT
GGCGGACATTCTCATGCATGCATTATCTTCGGCTCATTCAAAAAAATTAT
TTTTAAAAATCATTCTGATTTTGCAGTTAGTTTTGTTTTTCTGAATCTAG
ATCTAGCATGTCCGAGATTTAAGAATTTCTATGCTATACTTTGATACCTG
AGATGTAAATCTATGTATTCCATAATATGGAGTTATTTTATTTGTATCTA
TATTTATTTAGTATAGGTTTACATAAATTTCGTGTATTCATGTTCTTTAA
AGTCAATTTCCGTATACGTTTAGTGCTTTAAGTCTTACATCTGACTTTTC
TAGGCAATTTGTATTTAAACATTTGTTTCTTTTTGACTGTAGTAGCTGAA
AGCAAGCCTGTGGTGCTGCTGATCAGTAATGAATATGGCAACTCCCATGG
TGGTGTCTCCACCATACACCGCCAGATGGCAAGCTTCCTGGTATCAAAAG
GAGCAGTGGTCTACAGTACCGTCTTGGGTGCCTCAAAGGATGATGAGGAT
GCTGCAGCTGCTGATGGGGTTCAGTTGATCTTTCCAACAAAGTCAACGGG
AGACAAGAGAAAGCCCAATCTCGATTGGCTAACATGGGAGCACTTAAGCC
ATTATCCAAACCTCCCCTCAGACATAGGCTTTATTGTTGGCCATGTTAAC
ATCACAAGTCGTGCGGCAAGACAGATCAAGGAGCAAAGCCTTCCTGATGC
AAAACTTGTACAAGTCACTCACGTGATGCCAGAGGAAACCAGCCACTACC
AGGGTGATGAGAAGGTGATGAGCATTGAGGAAGAGAGTGACAGAATTTTG
GATGACCTTCAACATGCTGATGTTATCTTCTCGATTGGTCCATTGATGTA
TGACTACTATCAGACAAAACAACTGAAATGTGAACATCACGAGTTTCTGC
CCAAACCATCTGACATGTTCAGTGAGATGCAAGTGAACTATGTCCACACA
AAAACAAAGACGGTGCTGTCCATGGGCACGATTATAGGCGCAGAAAGCCT
GAGAGGCTACGATATTGCTGCCAAGGCCATGCACATTGTGATTGAGCAAC
TGCCCAACACCAAGTGGCGAGCCTGTGGTGTCAGTGCTGAAGACTTTCCA
GAGAGCAAGAAAATCGTCCAAGCCAACGTGGAGAATGGCAAAATCCACTT
CACTCCCCTGAAGCATACAACACAGGAAGGGCTGAGCAGAGAGATACAAC
AGGCCCATGTTGTTCTGATGCCATCACGTGCAGAGCCGTTCGGACTGGTT
GGTCTGGAGGCCATTGCTGCAGGACTTCCAGCCTTGGTCTCCCACAAGTC
TGGTCTCGCCTGGTTCTTGAAGAGCCAAGATCCTGAGTTTGACCGTCTGA
TTGTAGAGATCGCAGATGATGACAACGAGGCTGCCAAAACTCTGGCTAAG
CGCATCATTAAGATTCTGAAGGATGGAGACAGGGAGTTTCAAGCTGCAAG
AAGGTTGAAGGAGAAACTTTTGGCCTCAAAGTACTGGGATGAATCACACA
GAAAGTTCCTCGAATTATTTGGCCTTTAG Coding sequence (CDS) from alignment at Sc0000003:2444693..2450421+ >Blg00642.0 ID=Blg00642.0|Name=Blg00642.0|organism=Branchiostoma lanceolatum|type=CDS|length=2742bp|location=Sequence derived from alignment at Sc0000003:2444693..2450421+ (Branchiostoma lanceolatum)
ATGACTGACTGGAATTTTGGAAGTGATGATGAGGATTTTGGGATGGCGCC
AGGCTGGAGCAGGTTTGAAGTCAGTCCGTCAGCACACTGGGCGATAGAAT
GTCGGCAAAAAGATGATGGAGCAGGGCACACCCTCCCGCTGCCCCCGAAG
ACCGACCCCGCCCCACTCTCCATTATGGATTCGAAGGGAACAGAATTTAA
GCAGATGTTGGACACCATTCTCAGCCGGCTGGATGAGACAGATGTAAGGC
TGCTTCTCCGGGTGTGGTCTGCACGTACTGGTAAACAGGAAAGTCGAGGG
AGTGAGGTGCCAGCTGACTTGATGAAGGACATGATGAAGAGTGAATACAT
CACAGCTGAGGACCTCGGAATGCTTGAGAAGGACATGATGGCTGCTGGGA
TCAGCTTTCCTGCTATTGTACGAGACATTCCAGATGTACCAGATGAGTTG
AAGTACACAAGGACAGTAGAGTCTGCAGTAGGACCCACAGGTGGAGAGTT
GGAGATTCCCGGTTTTGTCAAACTCATTGTGCCACCAGACGTCCTTCAGC
GAGACACATTGATAACCATCTCCACTGTAGATGTTGCTGCTATTCTAAGG
GATCCTGAAAGTGCAAACTGGACCTCCGGCTACCCCTGGTCTCTGGGTGA
GGACGCCTGTCCACGTGAGCTACTGGATCAGGTGCTGTTCTCCCCAGCTG
TGGACGTCAACCTACACGGTGCACAGCTGAATGGGCCAGTGGAGGTGCAG
ACATGGCGGCCTCCAGGTTCTGAAAGGATGAAGTTTCTTGTGCTGAAGCA
TCATAATGGAGAAGGTTGGACAAATATTACAGCTTCAACGCTGTACCAGG
TGTATTCAAATAAGATATCTCTTTTTTTGCAATCATTCAGTCCTGTGATT
ACCGAGTGGGCCCCCGTGGAAAAGGTAGTCTCAGTAGGAAAGATGATGGT
TGGTGCGTTGTCCTCAAGAACTCTCGAACTCTGCCGGTTTTCATCATACA
TAAACCCCAGTCTAGAAGATGTGCAATTCTACGTTGTCTGTAGAGACAAG
AGGGTCGAGACAGATGACTATCTCCCAAGCTTCACTCAATGTGGAGGCAA
CGCAGCAATGTTCTCTCTTTTCCATGGGGACATACTTGACATTGCAGTTA
GTGTCCGAGGAGGACAGGACCAATCCAAGCAGATGGAACTACAGTCCGAG
CAGTGCCGTGATAAAAAGGGCCAGAACGTTCAAATGTTGCTGGACAGACC
TAATGGAAACCGTGTCAAGGGCGAAGTGGATGTCAAGAAAGTTCAAGTGC
CGTCAAATCGGACTGCTTGTCAGTTCATTTTCAAGGAGGAAGGTGATATC
TTACAAAGTCACTACAAGAGAGACAGCACCACTGAAGAATCTGACCGCAC
CCAATCAACAACCACAGAACTGGTGGAGTCTGTGAGGCAAAACCTGGCTG
TAACAAACATTACAGAAGGTGACAGAAAGAAGGATGTCCTGCCAGCTGAA
ACATCCCGACCTCAAGCTGGGCCTGGTGACAGCAGAAGTGACTCCATTGT
TAGAGTAGCTGAAAGCAAGCCTGTGGTGCTGCTGATCAGTAATGAATATG
GCAACTCCCATGGTGGTGTCTCCACCATACACCGCCAGATGGCAAGCTTC
CTGGTATCAAAAGGAGCAGTGGTCTACAGTACCGTCTTGGGTGCCTCAAA
GGATGATGAGGATGCTGCAGCTGCTGATGGGGTTCAGTTGATCTTTCCAA
CAAAGTCAACGGGAGACAAGAGAAAGCCCAATCTCGATTGGCTAACATGG
GAGCACTTAAGCCATTATCCAAACCTCCCCTCAGACATAGGCTTTATTGT
TGGCCATGTTAACATCACAAGTCGTGCGGCAAGACAGATCAAGGAGCAAA
GCCTTCCTGATGCAAAACTTGTACAAGTCACTCACGTGATGCCAGAGGAA
ACCAGCCACTACCAGGGTGATGAGAAGGTGATGAGCATTGAGGAAGAGAG
TGACAGAATTTTGGATGACCTTCAACATGCTGATGTTATCTTCTCGATTG
GTCCATTGATGTATGACTACTATCAGACAAAACAACTGAAATGTGAACAT
CACGAGTTTCTGCCCAAACCATCTGACATGTTCAGTGAGATGCAAGTGAA
CTATGTCCACACAAAAACAAAGACGGTGCTGTCCATGGGCACGATTATAG
GCGCAGAAAGCCTGAGAGGCTACGATATTGCTGCCAAGGCCATGCACATT
GTGATTGAGCAACTGCCCAACACCAAGTGGCGAGCCTGTGGTGTCAGTGC
TGAAGACTTTCCAGAGAGCAAGAAAATCGTCCAAGCCAACGTGGAGAATG
GCAAAATCCACTTCACTCCCCTGAAGCATACAACACAGGAAGGGCTGAGC
AGAGAGATACAACAGGCCCATGTTGTTCTGATGCCATCACGTGCAGAGCC
GTTCGGACTGGTTGGTCTGGAGGCCATTGCTGCAGGACTTCCAGCCTTGG
TCTCCCACAAGTCTGGTCTCGCCTGGTTCTTGAAGAGCCAAGATCCTGAG
TTTGACCGTCTGATTGTAGAGATCGCAGATGATGACAACGAGGCTGCCAA
AACTCTGGCTAAGCGCATCATTAAGATTCTGAAGGATGGAGACAGGGAGT
TTCAAGCTGCAAGAAGGTTGAAGGAGAAACTTTTGGCCTCAAAGTACTGG
GATGAATCACACAGAAAGTTCCTCGAATTATTTGGCCTTTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Blg00642.0-exon-Sc0000003-1570713199:2444693..2444714 | Blg00642.0-exon-Sc0000003-1570713199:2444693..2444714 | Branchiostoma lanceolatum | exon |
| Blg00642.0-exon-Sc0000003-1570713199:2445041..2445211 | Blg00642.0-exon-Sc0000003-1570713199:2445041..2445211 | Branchiostoma lanceolatum | exon |
| Blg00642.0-exon-Sc0000003-1570713199:2445450..2445614 | Blg00642.0-exon-Sc0000003-1570713199:2445450..2445614 | Branchiostoma lanceolatum | exon |
| Blg00642.0-exon-Sc0000003-1570713199:2445743..2445817 | Blg00642.0-exon-Sc0000003-1570713199:2445743..2445817 | Branchiostoma lanceolatum | exon |
| Blg00642.0-exon-Sc0000003-1570713199:2446877..2447781 | Blg00642.0-exon-Sc0000003-1570713199:2446877..2447781 | Branchiostoma lanceolatum | exon |
| Blg00642.0-exon-Sc0000003-1570713199:2448112..2448130 | Blg00642.0-exon-Sc0000003-1570713199:2448112..2448130 | Branchiostoma lanceolatum | exon |
| Blg00642.0-exon-Sc0000003-1570713199:2448404..2448511 | Blg00642.0-exon-Sc0000003-1570713199:2448404..2448511 | Branchiostoma lanceolatum | exon |
| Blg00642.0-exon-Sc0000003-1570713199:2448764..2448853 | Blg00642.0-exon-Sc0000003-1570713199:2448764..2448853 | Branchiostoma lanceolatum | exon |
| Blg00642.0-exon-Sc0000003-1570713199:2449235..2450421 | Blg00642.0-exon-Sc0000003-1570713199:2449235..2450421 | Branchiostoma lanceolatum | exon |
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000003 | genome | Sc0000003:2444693..2450421 + |
Properties
| Property Name | Value |
|---|
| GeneID | Blg00642 |
|
