Blg00630.0 (mRNA) - B. lanceolatum

Overview
NameBlg00630.0
Unique NameBlg00630.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000301:303540..307034-

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00630.0 ID=Blg00630.0|Name=Blg00630.0|organism=Branchiostoma lanceolatum|type=mRNA|length=3495bp|location=Sequence derived from alignment at Sc0000301:303540..307034- (Branchiostoma lanceolatum)
CAGTTCAGCAGCAAGCCGCAAGGTGGCGCCATGTACAGCCTAAAAATCCC
CGTGAAGCAGTCTGGAGAGAGGCTGATTGTGATAGAACGCTACCCTTCCA
ACTTCAGTATCCTCAAAGTGACTGTGATAGTATCATTAGTTTGGTTGTCT
GTTGGAGCCGTCATGTGGCAATTCGCGTTGCTTGATGAGACGAGTAGTGC
GCTTCATCATGAAAGCGCTAGGAGCGCTTCTGTCAACAAAGTTGGAGCGG
AACATCCAACAAGAGACAAACAGCGACTAGACCTTGGAGAAACAAAGAAA
ACTTCACGGAAAAGTTCAGCCGTGAAGAAAGAAAAAGAAAAGGAGAAAAT
TGTGGAGAAGGTTAGTAAATACATGGAACGAACTTTACCTGGTATGTTTT
GAACTTGACTTTATAGGACACAAATTTGAACTCGACTATACAGGACAAAC
TTTCTCATTCGGGTTCAACCGCGACTTCTAACCGTAATAAAGGAATTGGT
GATTGGGTCAAAGGTTTGCTTAAATGGCGCATGTTTCTTGCTGTTGGAAA
ATTCAAAACTTTAACCAAAGCTCTCCTTTCAGAGAGAAGAGAAAAAAGAG
CCCATCGACCTGACTACACATCTAAAACGCCCGACAGTCGACCCCACAGC
TCCGGGTGAAGGGGGTCAGGGGGTCAAACTTCAACCTATGACCCCGGAAG
AGAAAAGGCTGCATGCGGAAGGATTGAAGAATAACTCCTTCAACGCTTGG
GCGAGCAGCAAGATATCCCTCCACCGGAGTCTGCCGGATCTCAGACACAG
ACTGTGGGTCATTTCTTTTACTTACCTTTTTTTCTCTCAAGAATACATTT
TGCTTTTGTGAATCACATGGTATGAATACTTGTACTTTTATTTCTGTGAA
TTAAGATATCAATTAATGATAAAGAGTGGTACTAATAAAATTAACATGAT
ATTACACCATGACAAATTTTCCCAATTGTTAGAAAAACATCTCGGTGTAT
GATCCATGAACTGAAGCGCTAAACGTCCACTAGAATTCAATCCACCCCCA
ACACACACACATGCAATTAATAAATGACAACAATACTAAACCACGGGCTC
CGTCCCTAAGGCGTCGCCAAAAAAGACAACTGCAACAAAGTGACCGACAA
AATGGCGTTCGCGCCTGGTTAAAGGTGTTGTCGTCTTTTTTCTGATCAGT
ACATACGCTTACTCTATTGACATTAACATAAAGACGTTCATCATTGTAGG
TGTAAAGAAAAGCAGTTCTTCCGGCCCTTGCCTCAAACCTCTGTCATCAT
CATCTTCTTCAACGAAGCCTGGTCCACGCTGCTTCGCACGGTGCACAGCG
TGTTAGAAGCGTCCCCTGCCGAGCTGCTGCGGGAAGTCATCCTGGTGGAC
GACTGCAGCACGTTCGGTACGGAACAGTGTCTTGTGTAGATCACATAAAG
CCTATGGGTGACATCCTAGGTCTTCTAAATTTCCAGAAAAAAAGATCAGT
CCTAATTAAAAGAAATATGCCTGGATTTTAAGTTATTATAACTGTCAAAA
CAGACAAAAAACTGTGTTACTGACAAGTAACAAAATAGCCAGGAATCCAA
ACTTATTATAGGTCCCAAGTCTCATCTCCGTAAATCCTCTATTTGCGGAG
AGAAGACTCGGGACCTATGATAGGTTTGGATTCCAGGCTAGTAACAAAAG
TCTTTACTTCATAACTCATATCTTAAGTCATTATCCTCAGGTACTAGGTT
CGTTCAGCGAAAAGCTTGATTAGTATTAGTCTCAACAATTTACGAGNTAA
CTCATATCTTAAGTCATTATCCTCAGGTACTAGGTTCGTTCAGCGAAAAG
CTTGATTAGTATTAGTCTTAACAATTTACGAAGAAATGGGATAACCTATT
CTGGGACCATTTTGGGACCCTTGACCTACCTTCCTGTCAGTGTGTCTCCG
ACGTACCTAGCGGACATGAGTATGGAAACTCACACAAACACAAAAAACAA
TACCTCCCGTTCCAAGGAGATAACAAATATATGATTAATAAACAAACAAA
ACAATTTTCCAGATCACCTGCAGGCTCCGTTGGAGGAATACCTGTCCGCA
CTCCCCCAGGTGCGGCTTGTGCGCAGCCCCAAGCGGCAGGGACTGATCAG
GGTACGGCTGGTGGGGGCCTTACACGCAAGGGGAGAGGTAAACTTTTTTT
GGCAACACCTCACAGGCGAAGCCTCTTAGTTTCCTTATACCCATCTCGTT
TCCATAAAACAAATTAAAAAGAAAAGAGAGAATGGAGAAAGGTACAATGA
TATTTATCTCCTTTTTCTTCTAGTTTCATTCTCTTTCTTCTAGTTTCATC
CTATTTCTTGCAGTTTTATATTCTCCGGCTTTGTCGGCTAAGGAAGAGAA
AAAAAAAACATTTTTGGCAACGCCCGAGAGACGTCTCCTTTGTGCAATTT
TTTGTCCATCATTTTCCGTGTTGAAAATGAGTGGGAAATGATCAGAACAC
TCTGAATTATTTCGGTTCCTGTGCCCAGGTCCTGACGTTTCTGGACTCGC
ACTGTGAGTGCATGCACGGCTGGCTGGAACCCCAGTTGGAGACCATCGCG
AGAAACTTCAGCACCGTCCCCATCTCCGTCCTGGACATCATCCAGCACGA
CACCTTCGAGTACGTCTTCGTAGGCCTAGAGGTGAGGCGTTCGTTCAAAC
AGACGGATAGATAAACACAAAATCACTGCTCAGTCAACCTTCCAGAGCAG
AGTAGTTAAAGCGACCAAACAAACAAAACAACGAACAAACATAGAATACA
GAGGATTTTAAACAAACTTTCTTGCACGATATAAACCAAGAACACTTTAT
TAGTATGTAGAACATTTGATTCAATTACAGCGACAAAGTTTTCAATATCC
TCGCCGAGATCAGACTTCACCCGGTTGAAGAAAAAGCAGGGAGCGTCAAG
AAAGCTCCCCAAGAGTAACTTTTCTTGCGTGTAATGGCTAAACATGTCGC
CCAAACATCTTCCTCAATATCGTGCGTTGTCGCTGTCTTTACTTACACCA
CAGGATACACAGATGGGCGGGATCAACTTCAACGAATTAACCTTCATCTG
GGAGCAGATTCCTGAGCATGAGAAGAAGCGGAGAACATCTCCAGTGGATC
CCATTAGGTTTGTTTTGTCAGTGAGCCTCCGATGGTCTTTAATGATTATC
CAATGAGCTCAACGGTCTTTCAATAATCTCTTCAGTCTTCCAATGATCTC
TCCAAGGTCTTCAAAACATCTTCCAATGAAGATCTTTCAATACTCTCATT
GGCTTTTCAACAATCTCAATGATCTTCCAATAATCTCCCACAAACTCTCA
ATAGTCGTTCAATGATCTATATGTATTTTGCTCTCTCTTTCTAAATTTTG
CTGACGTGCAATTCACCAACAGGTCTCCGACCATGGCCGGCGGGATTTTC
TCCATTAGCAAGAAGTACTTCGAGTACCTGGGGGCGTNATATTGA

Coding sequence (CDS) from alignment at Sc0000301:303540..307034-

>Blg00630.0 ID=Blg00630.0|Name=Blg00630.0|organism=Branchiostoma lanceolatum|type=CDS|length=1203bp|location=Sequence derived from alignment at Sc0000301:303540..307034- (Branchiostoma lanceolatum)
CAGTTCAGCAGCAAGCCGCAAGGTGGCGCCATGTACAGCCTAAAAATCCC
CGTGAAGCAGTCTGGAGAGAGGCTGATTGTGATAGAACGCTACCCTTCCA
ACTTCAGTATCCTCAAAGTGACTGTGATAGTATCATTAGTTTGGTTGTCT
GTTGGAGCCGTCATGTGGCAATTCGCGTTGCTTGATGAGACGAGTAGTGC
GCTTCATCATGAAAGCGCTAGGAGCGCTTCTGTCAACAAAGTTGGAGCGG
AACATCCAACAAGAGACAAACAGCGACTAGACCTTGGAGAAACAAAGAAA
ACTTCACGGAAAAGTTCAGCCGTGAAGAAAGAAAAAGAAAAGGAGAAAAT
TGTGGAGAAGAGAGAAGAGAAAAAAGAGCCCATCGACCTGACTACACATC
TAAAACGCCCGACAGTCGACCCCACAGCTCCGGGTGAAGGGGGTCAGGGG
GTCAAACTTCAACCTATGACCCCGGAAGAGAAAAGGCTGCATGCGGAAGG
ATTGAAGAATAACTCCTTCAACGCTTGGGCGAGCAGCAAGATATCCCTCC
ACCGGAGTCTGCCGGATCTCAGACACAGACTGTGTAAAGAAAAGCAGTTC
TTCCGGCCCTTGCCTCAAACCTCTGTCATCATCATCTTCTTCAACGAAGC
CTGGTCCACGCTGCTTCGCACGGTGCACAGCGTGTTAGAAGCGTCCCCTG
CCGAGCTGCTGCGGGAAGTCATCCTGGTGGACGACTGCAGCACGTTCGAT
CACCTGCAGGCTCCGTTGGAGGAATACCTGTCCGCACTCCCCCAGGTGCG
GCTTGTGCGCAGCCCCAAGCGGCAGGGACTGATCAGGGTACGGCTGGTGG
GGGCCTTACACGCAAGGGGAGAGGTCCTGACGTTTCTGGACTCGCACTGT
GAGTGCATGCACGGCTGGCTGGAACCCCAGTTGGAGACCATCGCGAGAAA
CTTCAGCACCGTCCCCATCTCCGTCCTGGACATCATCCAGCACGACACCT
TCGAGTACGTCTTCGTAGGCCTAGAGGATACACAGATGGGCGGGATCAAC
TTCAACGAATTAACCTTCATCTGGGAGCAGATTCCTGAGCATGAGAAGAA
GCGGAGAACATCTCCAGTGGATCCCATTAGGTCTCCGACCATGGCCGGCG
GGATTTTCTCCATTAGCAAGAAGTACTTCGAGTACCTGGGGGCGTNATAT
TGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00630.0-exon-Sc0000301-1570713199:306675..307034Blg00630.0-exon-Sc0000301-1570713199:306675..307034Branchiostoma lanceolatumexon
Blg00630.0-exon-Sc0000301-1570713199:306232..306452Blg00630.0-exon-Sc0000301-1570713199:306232..306452Branchiostoma lanceolatumexon
Blg00630.0-exon-Sc0000301-1570713199:305619..305785Blg00630.0-exon-Sc0000301-1570713199:305619..305785Branchiostoma lanceolatumexon
Blg00630.0-exon-Sc0000301-1570713199:304848..304972Blg00630.0-exon-Sc0000301-1570713199:304848..304972Branchiostoma lanceolatumexon
Blg00630.0-exon-Sc0000301-1570713199:304354..304506Blg00630.0-exon-Sc0000301-1570713199:304354..304506Branchiostoma lanceolatumexon
Blg00630.0-exon-Sc0000301-1570713199:303878..303981Blg00630.0-exon-Sc0000301-1570713199:303878..303981Branchiostoma lanceolatumexon
Blg00630.0-exon-Sc0000301-1570713199:303540..303612Blg00630.0-exon-Sc0000301-1570713199:303540..303612Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00630.0Blg00630.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000301genomeSc0000301:303540..307034 -
Properties
Property NameValue
GeneIDBlg00630