Blg00616.2 (mRNA) - B. lanceolatum

Overview
NameBlg00616.2
Unique NameBlg00616.2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000301:76002..81621+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00616.2 ID=Blg00616.2|Name=Blg00616.2|organism=Branchiostoma lanceolatum|type=mRNA|length=5620bp|location=Sequence derived from alignment at Sc0000301:76002..81621+ (Branchiostoma lanceolatum)
TACAATCAGGAAGTACGTGGTAAGGAACATTAGATGTCGGCTGGTCCTGA CGAAACATTTCTCAACAGGTGAGTTAGTCTTATATCCCTGTATGTACCTG TCATTTGTACTGCTCATGGCTTGTCAGAAGACAACGTCATGGTTCAGAAG TTACACATACTTTTAGAGTACCTCTCTTGGTCTTACATTCGCTTCGCGGG TTGTTGTTGTCGTCATGTTCATAAACAGGAGGACGTACATAGTACTATTG TTGTTTATTTCAGACTTGAGGCGCTTAGCTGTTGATTATGACCTCGTAGC CTAAACCGTGAAGAAACTAGTGGTCTAAAACTTAGATAAGTTTGAACTGT CGTGGTATGTCTCAAACGGTTAATACCTGGTGTATGTGTTTCCTTCGTCA TGAGTATAACAATATGATTAATCTTGAGACTCTTATGAAGTAATAAGCTA ATCATACAGAAATGAGAAACATATAAAAGCCGGAACTAAAGCTGATTTTT CTCTGTCCTTTCCTACTTCGACGCCCTTTTTGTCACAAGTTAACCATTAA ACCTAAGGTCATCTTAGGTCAACCTCTCAGAACAGGGGGCTCTACAAAGG GTTCTTATACGACATGGAAATAAACACCATTGCATCGACCGATTTCTAAT GAGGCGCTTCCTTTCCTGTTTATCGAAATACCCTGCACTTAGTCTAGCTG TAAATTCACATCTTACATGTATTTGCAGCGAGAAAACCTCTGGTGCAAAC ATGAGCTACGGAGCGACACCGGCGCCCCCTGGCTATGACAACCCGAACTA CACCTACCAGAGCATGGCTAGCGCCCCCCAACACACCATTGTGGGACCGC AGGCTTTTGTCGAGTCCGACCGATTGATCCAGCTGCATCGTGCCCAACAT GCCCAACAGTCTTTGGGAGACGATGACGAAGATATGGACATCTACAGTAC AAAGGGGCATGTCAAGGTTGGTAAAAGGGAATTCTATATAAACAAAGGAA AAAATAAGAGACTATACTTTAAAATCCACTAGCCATTATGTGTCTATGCT GTCTAACAATCTCAGGCTATATATAAGAGGTCGAACCTCAAACTGAGGAC GTTTCTTTTCATCAGCTAGTAGTGCCATGCGGCTTCATTACTACAACTTG CGTATTTTGCCAAGCACACCGGGTCATCCTAGCTCTTCTCGATAAGTGTG TTCTTTTGCCTGAAGCTCCCTCACACACGGGGTCACCGGCTCTACATATA CCGTAATATAAAGTAAAGAACCTTTCCCGATTCGTTTTCACAGGTCACCT TTGACGAGATCTTCAACGAGCCGCAGAATGTGACAAGTTGGGGGCCTATT CGAACTGTAAACTCTGTTGTCTTCGAGTACACACAGGTAACGTATACGTG TTTGCAGCGAGAGACGTGTTACCTTAACTAACAAATACCTGCTACGTTTC TGTGCATTTTCTTCATTAAGAAGGAAACGCCGACATCTTATCAAAAGCAT CCAACATCAACAAGCAAATGCAGGATATTTCGTCCCCATCTAAGGTCCAC CTGGGAGCATAACATGCGTATCTGTTGAGCTCGCTCTTGTTCTCTTGAAT AGTGCGTCCTCTAGCGATATAAAACCAAACTGTAGCATGCATTCACTGCG CGCATTGGTAGGCCTCTTTTTCCCGCTCATATTCAAAAGAACACAGTGCT CAACATACATAACCGTGACTGTGTAATTCATCTCCACAGGGTGGACTGTA CAAAGTGCTATCCGCTGGTTTGGGGGTGATACTGGCCGTTCTGTGGGGCC TAGCGTTCGGCCTCTTCAACTTCTTCATCGTGTGGTTTGTCCACCCCTGG CTGAAGATGTGCTTCATGGGCATACGGCTCTTCGGTCTGACCATCAAGGC CATCGTCCGCGCGTGCATTGACCCGTGCTTCCAGTCCATGGGCCTGTCTC TCAGCTCCATCGCCGGCAGGTTCAGCCTCAAGCTGTCCGGCATCCCGGGA CCGAGAGCGGACCCAGAGAACGCAATTCAAAACAACCAATGAGAGAAGAA GAGCGGCTGTACATCTTCTCGTTCCGAAGAAAATATTCAGATGTATTCTT TTCAAACATACTCAGAATTCAGGATTCATCCTCTTGCACGTAGTGCGTAG AGCCATACATACTACACGTACTTAATCACGTATGCTTGGGCGGCGTACAC TGAAGGTATATACTAAGAATAACATTTTCTCCTTTGTTTCTAGTTAGTCT TATCTTGAGGATACCTTGGGGATGAATAGGTGAAGAAGGCAGCACACCTG TTGTTATCATCCTCGTCTTAGTCTTTATATTTGCACTGCAAGAATCTAAT AGGCACGGTTGAATTGGAAATACTAATGTAGCAGTTTTGTTATGTCATCA TTTCGAGCTCTCTGTACCAGTAAATTTGTGTCCATGTATGTTTTTGATCT ACTAGTTGGGCAGCCTTGTTACCTCATTTGCTGAGAATGCTTAATTAAGA TTTTTGTCACCAGCTAATAGTTGGGAATAAACGCGTTTTTGTGAGAACCG TAAGTTTAGCACAGCGACAACGGTTTCCACTTTTTTGTAGTGTAAGCAAA ACTCCTCCGGCGACCGAGGCAATAGGAAACGCCGCAGAAAAACAAGTCCC GAAAAATATACAAGTTCTGATTAGCATGATATTAGGACAACGGTTGTAAG ACGTCCAGGTTGGGGTGGGTTCTCACATCGGGTGTTCAGAGTATATCTTG TAAATGCGAATCACAAGGGACCGCTCATTTACTAAAAGCCCTTCACGAAC ATTGTCTTTATTACCTATCGGTGTATTTAGCATTGTATGTCTTGCTACAA TGCTGGAATACGTGTCTTATCTTTTAAATGCCTCTTTAGCAGCCTTATCC AGGTAGCGCTACAAGCAAATGCTGTTAAGGTACTTAAGGGTGAACTTAAC GGGAGGCGGTTACTTCCGTTCATTGAACCCAAGTCACGAGGTTACAACGC GGAAGTAAGTTGTTGTCGGTAACATTAAATGTCGGCTGGTCCTGACGAAA CATTTCTCAACAGGTGAGTTAGTCTTATACACCTGTATGTACCTGTCATT TGTACTGCTCATAGCTTGTCAGAATACAACGTCATTGTTCAGAACTGTTA CACATACTTTCAGCGTACAACTCTTTGTCTTATATTCGCCTCGCGATTTG TTGTCGTCATGTTCATAAACAGGAGGAAGTACAGTGTACTGTGATTGTTA TATATTTCAGCCATGAGGCCTTTAGCTGTTGATTATGACTTCGTAGCCTA TACCGTGAAGAAACTAGTGATCTAAAACTTAGATAAGTTTGAACTATCGT GGTATGTCTCAAACGGTTATACCTGGTGTGTTTGTGTTGGGGGGCGTTTC AAGTAGCATCCGCTACGAAAAGTAGTGGATGCTACTTGAAACGTCTGACC GTTTCCAAAATCATATCCAGTTGTTCGAGTAATTGCTTTTTTAGTTATAC CTGGTGTATGTGTTTTCTTCGTCATGAGTCTAACAATATGTTTAATCTTG AGACTCTTATGAAGTAATAAGCTAATTATACAGAAATGATAAACATATGA AAAACGGCTATCAACGGTATCTATACAACTAAAGCTCATTTTCCCCTGTC CTTTCATACTTCGACGCCCTTTTTGTCAAGGGTTAACCATTAAACCTAAG GTCATCTTAGGTCAACCTCTCAGAACAGGGGGCTCTAGAAAGGGTTCTTA TACGACATGGAAATAAACACCATTGCATCATGACCGATTTCTAATGAGGC GCTTTCTTTCCTGTTTATCGATATACCCTGCACTTAGTCTAGCTGTAAAT TCACATCTAACATGTATTTGCAGCGAGAAAACCTCTGGTGCAAACATGAG CTACGGAGCGACACCGGCGCCCCCTGGCTATGACAACCCGAACTACACCT ACCAGAGCATGGCTAGCGACGCCCCCCAACACACAATTGTGGGACCGCAG GCTTTTGTCGAGTCCGACCGATTGATCCAGCTGCATCGTGCCCAACATGC CCAACATTCTTTGGGAGACGATGACGAAGATATGGACATCTACAACATCT ACAGTACAAAGGGGCATGTCAAGGTGGGTAAATTCTATACAAACAAAGGA AAAAATGAGAGACATACTCACAGTGAAATCCACTTGCCATCATGTGTATC TACGGTGTCTAACAATCTCAGGATATATATAAGCGGTCGAACCTCAAACT GAGGACACTTTTTCATTAGCTAGACTAAGTGCAATGCGGCTTCATTACTA CAACTTGCGTATTTAGCCAAGCACACCGGGTCATCCCAGCTTATCTCGAT AAGTGTGCTGGGTTCTTTTACGTGCTTTTGCCTGACGCTCCCTCACACAC CGGCTCTACATATACCGTGATATTAAGTAACTAACCTTCCCCGATTCGTT TCACAGGTCACCTTTGACGAGATCTTCAACGAGCCGCAGAATGTGACAAG TTGGGGGCCTATTCGAACTGCAAACTCTGTTGTCTTCGAGTACACACAGG TAACGTATATGTATTTGCAGCGAGAGACGTGTTACCTTTGCTAACAAATA CCTGCTACGTTTCTGTGCATTTTCTTCATCAAGATCTTATTACAAGCACC CAACATTGGCTAGCAAATGCATGATATTTTCGTGCCCATCTTGGGTCCTT CTGGGAGCATAACAAGCGTATCTGTTGAGCTCGCTCTTGTTCTCTTGCGC GGTTCGTCTTCTGGCAATATAAGGCCAAACTGTAGCATTCACCGCGCGAG ATGGTAGGCCTCTTTTCTCCCGTTCATATTGAAAAGAATAGTGTTCAACG CACATACCCCTGACTATCTATTTTGTCTCCACAGGGTGGACTCTACAAAG TGCTATCCGCTGGTTTGGGGGTGATACTGGCCGTTCTGTGGGGTCTGATG TTCGGCCTCTTCAACTTCTTCATCGTGTGGTTTGTCCACCCCTGGTTGAA GATGTGCTTCATGGGCATAAGGCTCTTCGGTCTGACCATCAAGGCCATCG TCCGCGTGTGGCTTGACCCGTGCTTCCAGTCCATGGGTCTGTCTCTCAGC TCCATCGCCGGCAGGTTCAGCCTCAAGCTGTCCGGCATCCCGGGACCGAG AGCGGACCCAGAGAACGCGATTCAAAACAACCAATGAGAAAAGAAGAGCA GCTGTACATCTTCTCGTTCCCAAGAAAATATTCAGATGTATTCTTTGCAA ACATACTACTTAATGTACTAAAACACGTTTGTAAATGCTTGGACGGCGTA CACTAAAGGTATATACTAAGAATAACATTTTTCTCCTTTGCTTCTAGCTA GTCTTACCTTGAGGATACTTTGAGGATGAATAGGTGTCATCCTCGTCTCA GTCTTTATATTGGCACTGTAAGGATCCAATAGGCACGGCTAAATTGGAAT ACTAATGTAGCAATTTTGTTATGTCATCATTTCGAGTTCTCTGTAAACTT GTGTCCATGTATGTTTTTGATGTACTAGTTGGGCAGCCTTTTTCCGTACC TCATTTGCTGAGAATGCTTAATTAAGATTTTTGTCATCAGCTAACAGTTT GCAATAAACGCGTTTTTGTG

Coding sequence (CDS) from alignment at Sc0000301:76002..81621+

>Blg00616.2 ID=Blg00616.2|Name=Blg00616.2|organism=Branchiostoma lanceolatum|type=CDS|length=669bp|location=Sequence derived from alignment at Sc0000301:76002..81621+ (Branchiostoma lanceolatum)
ATGTCGGCTGGTCCTGACGAAACATTTCTCAACAGCGAGAAAACCTCTGG
TGCAAACATGAGCTACGGAGCGACACCGGCGCCCCCTGGCTATGACAACC
CGAACTACACCTACCAGAGCATGGCTAGCGCCCCCCAACACACCATTGTG
GGACCGCAGGCTTTTGTCGAGTCCGACCGATTGATCCAGCTGCATCGTGC
CCAACATGCCCAACAGTCTTTGGGAGACGATGACGAAGATATGGACATCT
ACAGTACAAAGGGGCATGTCAAGGTCACCTTTGACGAGATCTTCAACGAG
CCGCAGAATGTGACAAGTTGGGGGCCTATTCGAACTGTAAACTCTGTTGT
CTTCGAGTACACACAGGGTGGACTGTACAAAGTGCTATCCGCTGGTTTGG
GGGTGATACTGGCCGTTCTGTGGGGCCTAGCGTTCGGCCTCTTCAACTTC
TTCATCGTGTGGTTTGTCCACCCCTGGCTGAAGATGTGCTTCATGGGCAT
ACGGCTCTTCGGTCTGACCATCAAGGCCATCGTCCGCGCGTGCATTGACC
CGTGCTTCCAGTCCATGGGCCTGTCTCTCAGCTCCATCGCCGGCAGGTTC
AGCCTCAAGCTGTCCGGCATCCCGGGACCGAGAGCGGACCCAGAGAACGC
GATTCAAAACAACCAATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00616.2Blg00616.2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00616.2-exon-Sc0000301-1570713199:76002..76069Blg00616.2-exon-Sc0000301-1570713199:76002..76069Branchiostoma lanceolatumexon
Blg00616.2-exon-Sc0000301-1570713199:76730..76967Blg00616.2-exon-Sc0000301-1570713199:76730..76967Branchiostoma lanceolatumexon
Blg00616.2-exon-Sc0000301-1570713199:77295..77387Blg00616.2-exon-Sc0000301-1570713199:77295..77387Branchiostoma lanceolatumexon
Blg00616.2-exon-Sc0000301-1570713199:77741..77970Blg00616.2-exon-Sc0000301-1570713199:77741..77970Branchiostoma lanceolatumexon
Blg00616.2-exon-Sc0000301-1570713199:81116..81621Blg00616.2-exon-Sc0000301-1570713199:81116..81621Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000301genomeSc0000301:76002..81621 +
Properties
Property NameValue
GeneIDBlg00616