Blg00542.0 (mRNA) - B. lanceolatum

Overview
NameBlg00542.0
Unique NameBlg00542.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000042:419526..426483+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00542.0 ID=Blg00542.0|Name=Blg00542.0|organism=Branchiostoma lanceolatum|type=mRNA|length=6958bp|location=Sequence derived from alignment at Sc0000042:419526..426483+ (Branchiostoma lanceolatum)
GTCCAAACAACGACTCACTCCTTTCCGGACTACTTTGGGCGACGGTGCCG AATGGAGAATATCAACGGCTGTCTGAGCGTAAGTTCGGCAAATATTTGTG ATTCGAGTTCGATGCGAGGGTCTGTCGGGGGGCGGGCAATGTTTAACGGT AGATTTAAGGCCCCCTCTCATTGGGCTCCGGCACTGCGGCGGCACTGCCG CGGCAGCTCATGACGGCACAGTCGCGAAGTTTTCATTTGCACTCTCACTG ACGTGCGGCGCATTTGCGTTTGAAGCCCAGATGAGTGAGTGCCTGGTGTG TTGTGTGTGGTGTCGATCCTTTTCAACTTCTAGACAACGTGCGCTGATTC TCAGTGTAGTTATGCCTTTTACAAACGGTTTATTATGAATTGATGTGATA TAGTCTTCCCTACCAAAGTGATTTTTGATTTTATAAAATGTGTGGTGTTT ACTAATATTTCTAAGTGGTTCCCTCCAGCCAGGGAGAAACGTGAGTTTCA CACTTTCTTTAGATGTACTGTATATCCAAAACTGTTGGTATTGACTGCGG GGCAAAGCCAAACATGTCTACATAGTATGTCCTAAACGTGAGTAGCCCAG TCATCCCAATGAAAATATCAGAAGATCTACAGCTACAATCCTCAACCTCA TTACAATGCAGTAAATTAGGTTTAGCCAAACTCTTAAACAGATCAATAGC TAGGGAAATGGACCGATTGTAGTTTGATGGTAGTGATTTCAATTAATCAG AAATCACAGTGCTGTCAACGGATCAAAATACAATGAAAAATGATACAAAA ATGCATCAAAAATTGATTTCAAGTGATAAAAGGATTTTAACTTATGACAC TTGGTGCAACAAAGGTAACATGTTATAGAATATACGTATAACCTTGAAAC TGACATATCACTTTTTACACAATAGCGCGCGCGGTGAGCTCCCGGCAAGC TCCCGGCGAGCGCGCGGCACTTTGCCACTTGCGTTTTATTAAATTAAATT AAAAAAAAAAAATCGCCATTTCAACCGGCACGCCGGAACGGCACTGGGAC GTCACTAGGACGGTACGCCGAGGTCTGTGCACGGCACTGCGGAGGTAGCT ATTTCCACGCTACCGCACGCTACCGCCACAGTTCCGCAGCTCAATGAGAG GGGGCCTTTAGGGGGACCTGCGAAGGTGGCGTCGCGGTGGCGCAGTGGCA ATGTGTTTGGCCCGGAACCCAGAGGTCATGGATTCAAATCCGGGGTCCCT GATTTGTGTTGCTGACGTTGTGCACTTGGGAAAGGCACTTAACACGACTT TCCCTACTTCACTGAGGTGAAAATGAGTATCTAGCTTCGGTTAGGGAAGT CACTGGGATAGGACGTTAAACGGAGGTCCCGTGTTTGAGGAGAGCCACGC CTCGAGCACGGAAAAGGATCTACCACGCTTATTGAAAAGAGCGAAAAATG CGAAAATACATCCACCGCAAACACTTCCACCTTTACAGTATCAATAGCAG ACCGGCTGCGATTAACGGCAAATCAATGCAAATTACATTTGTATCTCAAT GAAACAAAAAAAATACACGTCAAAAACCAGCCGGACCCACTCCTCTGCTT GGAGAGTACCAACTATATTCTTATCAATTCTCAGATGTCCCGGGATACTT GCAAGCCTCCCAGTGGGCGGGGCTATGACGTCATCGAGATAGACAACCTG CGATTGCGCACAGAGATCGGCTTCAGTCAACACGAGATTGGGAAAAAACA GGAAGTCGTCATCAGTTTGCGCCTGGGTTGTGACGTGAGCAAAGCGGGTA AAAGTGATGACGTCAGCGATTCCGTGAACTACAGGGATGTTGCCAAAGAC GTCATCAACTACGTGGAGTCGGCGTCTTTTAATTTGGTGGAGAAATTAGC GACTGATGTTGCTAGAATCTGCATCGCTGTCCACAAGGTACGTGTGATTT GTGTAACGTACTTGACCACATTTTTTTCCGAACTTTGAAAGTTTTCAACA CACAGAAACGTCTGCAGTATCGTCTCTGAATATCATCTAAGAGGTCCGTT ATGACGCAAAGCAAAACCATGCTCAAATATTACACATCTTTACAGTATAT CACACGATATATCTATTTTTGTACACTCTATCCAAGGCAATGGGGCTATA GGGAGAAACCTCATTGCTCTATCTACATGTACGAATGTCGTCAGGAGGAC TATATTTGTTGTGGCGTTTGTAACTAAGTGACTTTGTTTGTGGATTAGCA ACATAACTCAAGAAGTTTAAGATAGAATATTGTAAATGGTTAACTCGTGA TTTATTGAAAAATATGATACGATTTTTGGGGCCCTGGCGGCTATCCTTGG CACTGCAGCAGAACATTTGTATCTTATCTCACATGTCTATAGGTCCCGTG GGTCCAGGTTCGAGCCCACAAGCCGCAAGCGCTGCGCTTCTCTGACTCCG TCGGCGTCCTGATCGAGAGAACGCCGGAGGATTTCGACGACAGCGTGGTC TACCTCTCCCTGGGGTCCAACATCGAGCCCAGGAGGAACCTGAGGGATGC CCTCGCATTGCTGAAGGAGAAAGTCTTGGTGCTGAAGGTGTCTTCGCCGT TTCTTACCTCGCCTCAGCTCCAAACCGACCAGCCAGACTTGATCAACATG GCGGTTAGGATCCTGACGGGAATGGCGCCGGCACAACTCAAAACCGTTCN TGGAAATGTCTTCTAACCTTGACCTATGACACGATGACGTGAGCACTACG CGGGTGGTGTAACCTCAAACCGTGGTCTTGGTTATTACTCTGAGTGGGTC CGTTTTCTGTGAAGTCCGACAGCCATCTTAGATTCGTGAAGACTCTTAGA CTCTTACTAGTATCTCTACTTTGTATCACTACTTGAATTAACTAAGAATA TTTATATGTGTAAGCAAAATTATATTATCCTTTTTTAACACATCTGTGAT ATTTCCGACGGCATTATCAGATTTACATGTATGTTTTATACATGATGCCT AAGACCCCGTCACGCGAATCGGAGCAGTGTCCGATGGGAAACGACCCTCG GCACCAGCACCACAGAGCCTTTGTTTCTGACAAACACTTAGATTTTAATT TCTGGTTACAAATAGCCGAACAGGACTCCCGAACACCTAGTATTTGTTAG CATTCTTGTTCAATGAGATGTATACTAACATCGCTCAAGGCATTGCTTGT ACACAGTTGTTAAGCTCTTAAATGCTTGAGCTCAGGTCTTTTTGTGCACA GCTCTTGACTTTTTTCAATCAAGTTGGTACCTAATCCGGCTCTTCTTTGG CGCACGTCCCTTTGTTCCGACGGAATTACTTGTAAGTCGGGATGAATTAT TTTCGTGCTCAAAAGGCCTGAGAAAATGTTGAGAATTCTCTGATGACGTT TGACCCCTTAGCACACATTCAGGACCCTCCTACGACCTCGCCCGCGGTAC AAACTCCCAACCTTGGTTTATAAGCAGTAGGACCAATTTTGAGACACGCC ATGGACGACTAAGTTCCTCGAAAGGACAACAGATTGACAATCTGGTGGTC GTTTTGGGGCCTCTCTTGTTGCGGCCGGGAGTGCCATTGGCCATAGCAGC TTATTCATACATACATACATACATACATACGTACGTACATACATAGTCAG ACTTATAATCAGGCTCTAATAGGTATGTTGTATACACGTGTGACAATGTT GTCCAACCGGTTTCTACATTAAGCAAAACCCCGTCCAAACAACGACTCAC TCCTTTCCGGACTACTTTGGGCGACGGTGCCGAATGGAGAATATCAACGG CTGTCTGAGCGTAAGTTCGGCAAATATTTGTGATTCGAGTTCGATGCGAG GGTCTGTCGGGGGGCGGGCAATGTTTAACGGTAGATTTAAGGCCCCCTCT CATTGGGCTCCGGCACTGCGGCGGCACTGCCGCGGCAGCTCATGACGGCA CAGTCGCGAAGTTTTCATTTGCACTCTCACTGACGTGCGGCGCATTTGCG TTTGAAGCCCAGATGAGTGAGTGCCTGGTGTGTTGTGTGTGGTGTCGATC CTTTTCAACTTCTAGACAACGTGCGCTGATTCTCAGTGTAGTTATGCCTT TTACAAACGGTTTATTATGAATTGATGTGATATAGTCTTCCCTACCAAAG TGATTTTTGATTTTATAAAATGTGTGGTGTTTACTAATATTTCTAAGTGG TTCCCTCCAGCCAGGGAGAAACGTGAGTTTCACACTTTCTTTAGATGTAC TGTATATCCAAAACTGTTGGTATTGACTGCGGGGCAAAGCCAAACATGTC TACATAGTATGTCCTAAACGTGAGTAGCCCAGTCATCCCAATGAAAATAT CAGAAGATCTACAGCTACAATCCTCAACCTCATTACAATGCAGTAAATTA GGTTTAGCCAAACTCTTAAACAGATCAATAGCTAGGGAAATGGACCGATT GTAGTTTGATGGTAGTGATTTCAATTAATCAGAAATCACAGTGCTGTCAA CGGATCAAAATACAATGAAAAATGATACAAAAATGCATCAAAAATTGATT TCAAGTGATAAAAGGATTTTAACTTATGACACTTGGTGCAACAAAGGTAA CATGTTATAGAATATACGTATAACCTTGAAACTGACATATCACTTTTTAC ACAATAGCGCGCGCGGTGAGCTCCCGGCAAGCTCCCGGCGAGCGCGCGGC ACTTTGCCACTTGCGTTTTATTAAATTAAATTAAAAAAAAAAAATCGCCA TTTCAACCGGCACGCCGGAACGGCACTGGGACGTCACTAGGACGGTACGC CGAGGTCTGTGCACGGCACTGCGGAGGTAGCTATTTCCACGCTACCGCAC GCTACCGCCACAGTTCCGCAGCTCAATGAGAGGGGGCCTTTAGGGGGACC TGCGAAGGTGGCGTCGCGGTGGCGCAGTGGCAATGTGTTTGGCCCGGAAC CCAGAGGTCATGGATTCAAATCCGGGGTCCCTGATTTGTGTTGCTGACGT TGTGCACTTGGGAAAGGCACTTAACACGACTTTCCCTACTTCACTGAGGT GAAAATGAGTATCTAGCTTCGGTTAGGGAAGTCACTGGGATAGGACGTTA AACGGAGGTCCCGTGTTTGAGGAGAGCCACGCCTCGAGCACGGAAAAGGA TCTACCACGCTTATTGAAAAGAGCGAAAAATGCGAAAATACATCCACCGC AAACACTTCCACCTTTACAGTATCAATAGCAGACCGGCTGCGATTAACGG CAAATCAATGCAAATTACATTTGTATCTCAATGAAACAAAAAAAATACAC GTCAAAAACCAGCCGGACCCACTCCTCTGCTTGGAGAGTACCAACTATAT TCTTATCAATTCTCAGATGTCCCGGGATACTTGCAAGCCTCCCAGTGGGC GGGGCTATGACGTCATCGAGATAGACAACCTGCGATTGCGCACAGAGATC GGCTTCAGTCAACACGAGATTGGGAAAAAACAGGAAGTCGTCATCAGTTT GCGCCTGGGTTGTGACGTGAGCAAAGCGGGTAAAAGTGATGACGTCAGCG ATTCCGTGAACTACAGGGATGTTGCCAAAGACGTCATCAACTACGTGGAG TCGGCGTCTTTTAATTTGGTGGAGAAATTAGCGACTGATGTTGCTAGAAT CTGCATCGCTGTCCACAAGGTACGTGTGATTTGTGTAACGTACTTGACCA CATTTTTTTCCGAACTTTGAAAGTTTTCAACACACAGAAACGTCTGCAGT ATCGTCTCTGAATATCATCTAAGAGGTCCGTTATGACGCAAAGCAAAACC ATGCTCAAATATTACACATCTTTACAGTATATCACACGATATATCTATTT TTGTACACTCTATCCAAGGCAATGGGGCTATAGGGAGAAACCTCATTGCT CTATCTACATGTACGAATGTCGTCAGGAGGACTATATTTGTTGTGGCGTT TGTAACTAAGTGACTTTGTTTGTGGATTAGCAACATAACTCAAGAAGTTT AAGATAGAATATTGTAAATGGTTAACTCGTGATTTATTGAAAAATATGAT ACGATTTTTGGGGCCCTGGCGGCTATCCTTGGCACTGCAGCAGAACATTT GTATCTTATCTCACATGTCTATAGGTCCCGTGGGTCCAGGTTCGAGCCCA CAAGCCGCAAGCGCTGCGCTTCTCTGACTCCGTCGGCGTCCTGATCGAGA GAACGCCGGAGGATTTCGACGACAGCGTGGTCTACCTCTCCCTGGGGTCC AACATCGAGCCCAGGAGGAACCTGAGGGATGCCCTCGCATTGCTGAAGGA GAAAGTCTTGGTGCTGAAGGTGTCTTCGCCGTTTCTTACCTCGCCTCAGC TCCAAACCGACCAGCCAGACTTGATCAACATGGCGGTTAGGATCCTGACG GGAATGGCGCCGGCACAACTCAAAACCGTTCTGTGTGGAATAGAGAAGTC GCTGCTGCGCGTGCGCGACCCTAACAACAAAAATGGCCCCCGCACAATCG ACCTTGACATCTCGCTCTGGGGGTCAGAAGTGCTGGAATACAGCGTTGTC GATAAGAAAGCGGGATCCAAACACAGCTTACTTAACGGCCACAATAAGAA AAAAGTACCCGACCCAGACATCCTTCGGTTCACCCATGTCGTCGTGCCAT TGGCTGAGATCTCTCCCCACATGAAGCATCCCACCAATGGCAGCACGCTA GCCTCTGTTGCCATGGAGATGACGGGTCGGAAGGATTATCATAAAACGTT CCCCATCATAGAGCTCTTCCGTTAGACGTTAAACTTAGGGCCCGGTCACT TTCGGCGTACGGTTGTCTTACGATCGCAAACTGAGAGCAATCTTGGGATA GTCGCTCATGTAGATCTGATCACTGAGCACATTCATTTAGTTAGTTCATG TATTGGTAAGCTGGACTTCTGTGGTATATAATTCAGTTGTCTTGCTACGG AAAAGGCT

Coding sequence (CDS) from alignment at Sc0000042:419526..426483+

>Blg00542.0 ID=Blg00542.0|Name=Blg00542.0|organism=Branchiostoma lanceolatum|type=CDS|length=981bp|location=Sequence derived from alignment at Sc0000042:419526..426483+ (Branchiostoma lanceolatum)
ATGGAGAATATCAACGGCTGTCTGAGCATGTCCCGGGATACTTGCAAGCC
TCCCAGTGGGCGGGGCTATGACGTCATCGAGATAGACAACCTGCGATTGC
GCACAGAGATCGGCTTCAGTCAACACGAGATTGGGAAAAAACAGGAAGTC
GTCATCAGTTTGCGCCTGGGTTGTGACGTGAGCAAAGCGGGTAAAAGTGA
TGACGTCAGCGATTCCGTGAACTACAGGGATGTTGCCAAAGACGTCATCA
ACTACGTGGAGTCGGCGTCTTTTAATTTGGTGGAGAAATTAGCGACTGAT
GTTGCTAGAATCTGCATCGCTGTCCACAAGGTCCCGTGGGTCCAGGTTCG
AGCCCACAAGCCGCAAGCGCTGCGCTTCTCTGACTCCGTCGGCGTCCTGA
TCGAGAGAACGCCGGAGGATTTCGACGACAGCGTGGTCTACCTCTCCCTG
GGGTCCAACATCGAGCCCAGGAGGAACCTGAGGGATGCCCTCGCATTGCT
GAAGGAGAAAGTCTTGGTGCTGAAGGTGTCTTCGCCGTTTCTTACCTCGC
CTCAGCTCCAAACCGACCAGCCAGACTTGATCAACATGGCGGTTAGGATC
CTGACGGGAATGGCGCCGGCACAACTCAAAACCGTTCTGTGTGGAATAGA
GAAGTCGCTGCTGCGCGTGCGCGACCCTAACAACAAAAATGGCCCCCGCA
CAATCGACCTTGACATCTCGCTCTGGGGGTCAGAAGTGCTGGAATACAGC
GTTGTCGATAAGAAAGCGGGATCCAAACACAGCTTACTTAACGGCCACAA
TAAGAAAAAAGTACCCGACCCAGACATCCTTCGGTTCACCCATGTCGTCG
TGCCATTGGCTGAGATCTCTCCCCACATGAAGCATCCCACCAATGGCAGC
ACGCTAGCCTCTGTTGCCATGGAGATGACGGGTCGGAAGGATTATCATAA
AACGTTCCCCATCATAGAGCTCTTCCGTTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00542.0Blg00542.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00542.0-exon-Sc0000042-1570713199:419526..419603Blg00542.0-exon-Sc0000042-1570713199:419526..419603Branchiostoma lanceolatumexon
Blg00542.0-exon-Sc0000042-1570713199:421160..421462Blg00542.0-exon-Sc0000042-1570713199:421160..421462Branchiostoma lanceolatumexon
Blg00542.0-exon-Sc0000042-1570713199:425650..426483Blg00542.0-exon-Sc0000042-1570713199:425650..426483Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000042genomeSc0000042:419526..426483 +
Properties
Property NameValue
GeneIDBlg00542