Blg00516.6 (mRNA) - B. lanceolatum

Overview
NameBlg00516.6
Unique NameBlg00516.6
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000042:337534..343771+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00516.6 ID=Blg00516.6|Name=Blg00516.6|organism=Branchiostoma lanceolatum|type=mRNA|length=6238bp|location=Sequence derived from alignment at Sc0000042:337534..343771+ (Branchiostoma lanceolatum)
AACAGTCATAAATCAAATGATATATCCGATCTTTGAGCTTTCACAACTCC TGCAGACCTTTACTTCCGGGTAATTTGGCGGGAAGACCTACTTGGAAGGG TCGTTTCTTTAGCTTCTTGGACAGGTAAAGAAGTAAGAATGAAGTCTTAC CTGTTATCTGGATTAAAATAGGATCAGTGGAAGCCCAGGCGGCGACAGGA GAGAGATTAAGAAACACGAGCTACAAGTTACAAGTTACCGTGTCTGAATG TGCTGCTTAGGAAATGAACACCCCTTTCTCAGGCTCCCGTCCGATTGGTC AATTTGTGGAAAGGAGTATTTTTGGAATGGGGAACTTTTCCGTCACTTCT TGTATGTTAATATTTTGAACAGTCTTAAAGGGATACGCTAGTAATGTAAA AAATGAATGATTCATGATAATAATGAATTATATTTGCTCATGAATAAAAT CCATTTTGTGCATGGAAACATGGTTTTGCAAAAATAATAAGAAACACCCC TTTATCTAAAATAGATTCAGCCGATACTGTCATGGCGGCCGCTTAAAAAA AATCACGAGAACGCTGAAAACACATCTCATCAGGGGCGATTTCCTCGAAT TTGTAGCAGAATTATCAACTTTCTTGTATCTTCTAGAAGTTAAGGTACGT TATTTAAGTCCTACTTTCCTTACCTTAAGTACGTAGATTGAAATAATGAC GTATAATATGTGACGGCAATCGGACCTGCATGAGAAATATTATATGGGGT GGGGGGTTTGTTTTGTTCCACCCTTTGTCATATTTATTTATTTCTTTGTC ATATTAAAATCATAAAATGCCAGCCTTTTCTTATCGCATATCTAGCTTCA TAGCTTCATACTATGTCGCATGCTGAGTATGTGTTTGCCTCTGCTACTGA CTGCCAGGGCAAAATGAGAATTTTTTTTCAAAGAAGGTGCAAATGATTGG AAAGTATAAAATGATTTTTATCTTTCATCACATAGCTTCAGAAGTTAAGA ACTTAAGATAGTGGGAGATATATTTAAGAACTAATGGTGAATAAAATGTG CAAAGTGTTATGATAATTTGAAATGATAAACTTAAAGTTAAACTTTAATT TTTCATCACAGAACTGCAGAAGATGGCAGAAGGTGAGGGTGAGGCCGGGG TGAGCGCCATGCCCCTCCCTCCCATGCAGTTCGTCAGCCAGTACACGACG GAGAACGTTTCCCGCGGCCTGGCGCCCCCGCCGCCTCCACCAATCACAGA CCAGTACTCCATGTTCGGCAGCGACTACCAGGTGGACGACCAGATCATCC GACCGCTGGAGTCACAGGTCGGAAGGGAAAGACACGCTGTTTCCATAAAA ATACTCTTTACTAGTACAAGGGCTGCCGAAACAGAGATGGGCACTGCCTT ATGCACCTTCGGTGCGGGGAGGACTTTAATCCTGAAAGTGAAAGGATGCA TCCGTGAATAAGTTTGTATATCACTAGTACTTGCCAATGCTTTTATGACT GTTTGTCACCTTCCTCAGGGCAGTACTGACTGGTTCTACTTGCAAACCCA AAAGTCACTGAGTTTGTATCCCCCTCATCATCATCAATGTACATGTAGAA TTTACTCTAACACTGCCTTCCTCTGCAGGGAATCCGTCGTCTCCACCCCG ACAAGTTTGACCACAAGCTGGAGCTGAAGAAGCTGAACCACTCCATCCTG GTCAACTTCCTGGACCTGCTGGACATCCTCATCAAGTCACCAAACACCCC GCGCAGGTCACTCTTTGTTTTATGTATCTGTATCTGTAACTGTATCCATA TTGTAGGGCTTAGACTGAGGCTGGATATCCTCATCAAGTCACCAAACACC CCGCGCAGGTCACTCTTTGTTTTATGTATCTGTTTCCATATTGCAGAGCT TAGCTTGAAAGTTTACCGGTGTTGGTAGACATCACAATGCAGCAAAACTG AACTGTAACTTTCAATACAAAAAGGAGACTTACCCATATTTTTGACTGTC CGACTCCAGTCTTTGTCCAGAAATGTGCAACCCACAATGCCACATTATGT AGGCAACAAATGAATTGGTCAGTAGTTGATCATAAACTACATGTACCATA ATGAAGATTTTGATTCTATCATCTTTTTTTTATTTATTGCTTTATATGGC CGTGGAAGAGGAGTTAAAGTTTAAATAAGAAACCATAGATACGATTTGTT TTACGTGAATTTTTGCTTGTGTTTTCCTGTGTCTTCATCAAAAAGGGAGG AAAAGATCGATGACCTGAACCTGCTGTTCATCCACATGCACCACCTCATC AACGAGTACCGGCCGCACCAGGCGCGGGAAACTCTCCGGGTCATGATGGA AGTGCAGAAACGACAGAGGCTGGAGACGGCTGACAGGTCAGTACAGTCGG GCCTAACCATAACCACAGCCCTAACCCTAGCCCTAACCACAGCCCTAACC CAACGAGTGCCGGCCGCACCAGGCGCGGGAAACTCTCAGGGACATGATGG AGGTGCAGTAACGACAGAGGCTGGAGACGGCTGACAGGTCAGTAATAACC CTAACCTGTACCAGTGTTCTCGCCAGGCCTTTTCAGCATAGGGGCCCCCT ATGCTGTGATTTGGACCCCCTATGCTGTGATCTGGACCCCTATGCTGTGT TTCAACCAGCATAGGGGTGCTTCTTTCTGGGACAAACCTTGTGACCCTTC ATAAATCTTATAAAAAGTTCATATTTGGCTTTAGAATGAGGCTGTGACAG AGGAAAAACTCTACTTCACAAAATTTGTCCCTCAAAATGCATGAAATAAT GTCTCATTGGGTTATGAATTTACAAATTTTCCAGGAGAACATGCCGGACT CCCTACTCTGGTCACTCCACGCATGACTTGCACCGCGTTAAGTTGGCCTT CTGTACCTGACCCCTATGCTGTGAAAAAATCCTGGTGAGAACACTGTGTA CCCTAACTCTAACCTAACAAGTACCGGCCGCACCAGGCGCGGGAAACTCT CCGGGTTATGATGGAGGTGCAGAAACGGCAGAGGCTGGAGACAGCCGACA GGTTTGTACAGATGTGCCCAACTGTAGTGTTAAAAGGAAAACAACAATTC CTCAACCACCACTTGCTAACCACTGGTCTGCATTCTGGCTATGCAGCAGT ACCACCTAGCAGATTATGTAAGAACTGCAGCATGATACAATGATTCTGTT TTCCCCACCCCAGGTTTCAGCAGCACCTGGACCGCGTCATCGACATGCTG AAGCAGTGCGTGCAGTCCATGCCTGAGGACATAGGGGGCGCCTCTGACAG CGAGGACATCAAGCCGGACCTGGAGGAGCTGAACAGACAGGCGGGGATCT CGCAGAGCAAACGTGACGAGGACTATGGGAAAGACAGACTAATGTGCAGC ATAGTGGACAACATCAAGTCATGATGAACATTCTTAGCTTCCAACCAGGG TTGAACAAGTTTTCAAAAATTCACTTGCCCTATCGGGCAAGTAGAAAAAA AATCTACTTGCCCGAACCAACTTTTGACTTGCCCGAAATCTAAATGACAT TTTTTCTTTGCATCTTTGCTTGCGGTAATGAATTCTGTTATTTTTCAGTA AAAACGTCTTGTTAAGCATGTAATTATAGCAAAAAAGTTTTAACTACAAG ACCAAGCTGTGTGGATGTCATGACCGTATTTACGGGAAATGACAAAAACT TGAACAAGAAGCATGATATTACAACGTATCTTCTTTCACTTAAACCACGC CAATTTCATTTGTTGCTTCTCAGATTTTTCAGAATAAAATCAGAGCGATA CGGAAAAAAAATTTGGCAAAAAGTCTAAGGTAAAGACACAGGCTTATTTA ACATAAAGAACAACATTCAAGTTTTCAGCAAATGTTGTGTATCGATCATT CCTTAGATCCAGTACTACAATATTCCTGTGTTCACTGAGGGCTATTATTA TTCTCCCATTTCTTTAGTAAACAGAAGAAAAAATCAGGTATTTGTCATAT GATGGAAAAGTTACATTTAGAGTGTTGTGGATCTAATATAACTAAACATG GTTCTTATGATATGGCCAGTTTTGAATCATTGTCGTAAAATTNAAAAGTT ACATTTAGAGTGTTGTGGATCTAATATAACTAAACATGGTTCTTATGATA TGGCCAGTTTTGAATCATTGTCGTGAAATTTTTATTTTCTAGATAACATT AGTCAATATCAATCCACACATGTACATCAAACAACACCTTCAAATGATTT TTTGCAGTATTAACATTTAGAAGTTGAACAGAAATTTAGAATATCCTGAA TATACACTCAATCAGTTAAAATGTTGTGGGAACCCTCAGAGTGTGTCATA TCCACAATGTTGCTGTTCAATGAAAGAAGGAAAATGCTACATTGAGAGAG TGCTCACAGGGATATCATGTTTCAAAGGATTTGATGTTGCAAAGTTTCAT GCCAGCAGGTCTACGAACTGAGAGAGCCATGGGTGTTTGTTTACATGTAC TATGTGAGCCAAATTGTCCTGTTTTGGGTTGAATTCATAATCTTTTGGAA TATTTTGAAAGAAATGTAGTTTCTAATGATAAGATACATTGTGGTGTGGT GTTTTTGTGATCCTTTCACTGGAATAAAGTTTGTTTTGAAACAGACTGCA TGAAAAAATCTTACTTGCCCGATCGGGCAAGTGGGGGAGGATATCCACTT GCCCGAACAGCACTTTCACTTGCCCCGGGCAATCGGGCAACCATACTTGT TCAACCCTGCCAACACAAGGAGTCTGTCTGATTTTGTAGATTTGCACTGT ACCCTTTATAGGCCATATTGTATCCAGTCTGACTATGGAAAGACAGAGTC ATGTACAGCATAGTGGACAACATCAAGTCATGATGAACATTCTAAACTTC CAACCTCCAACACAACAAGAAGTCTGTCCGATTTTGTAGATTTGCACCGT AGCCTTCATAGGCCATATTGCAGACAGTGGAATTATGAGTAGGCAAGAGA CACATGCTATGAAAACGCATATGGGGCCGTGCATACTGTGTCCGGTCTGA CTACGGAAAGACAGATTCATGAAAAGCATTGTGGACAACATCAAGTCATG ATGAACAGCTGAATATGTTTGGCAACATAATTAAGTATATAAGAATAAAT ATTGTCAGTATTGTTCCCAAATCTAGTTAGCTCACGAGCTGATCTTCCAT TGGTCGTAACAGGAAAAACGATATGTACAGATCATACAGTTTCATTGAAC AGGCAAATTCCCCTAGCCCTTTTTGACAAGTATACTGTATTAGCATACAG TTGAGAGCCTAACAACTCTGACTTTTAATGTTAGGGATGAAATAGGTCTC AAGCAAGGAGTGACTGGAAATCAGTAAGTGGACTACTGCTGTACTGATTC CTACACCATGTTTGTCATAGCCTGTGTTACCCAGTTTCTCACTGCCAGGG ACTAATCCCCCTCCCCAAGACCCACAGTCAAGCGAGCCACTAGGAGCATG AACAGTAAGGCCATGTGGTCCATATCTGTTTCTCATTGGCCCACACCTCT GTGCAAGCACTACAGCAAGGGACTGGCTGAGTTCTCTACATGTCCCTACT GGGCCATTGCAGCAGTCAGTGAACAATATGAAGGATGTGTTCACCTGTAC ATACCGATCACATACATGTAGATGTATCCAGTAATATCACCTATTTATTA GGTGCCTTGAAGGCAAAGGAGATGCAAAACGGAATGGGCATTAGCATAAC TGCAAGATTTCATGCCAACTAGACCAATGACATTATCCAGATTTGTCATG TCCTTGACTGGACCAAATGTAACAAGGCCACAGCTTACAAACCTGTTTTC TTAATTCCTAGACTTGAGCTGATTTGGTAATAAATGGTGTCGCAAAATAA GCTTTTATTGGGATCATTTTATACAACTTTGTCTTGTTCTTAACTCATCG ATCTTATTAGGTTATCACTTAGCCTGAGTACCAGCCTGTTTATCTATTGT CCGCTCCCCACAATCCGCTACCAGATCGTGAGGAGCGGACGAAAGCTAAA AAAGGCTGGTACTCAGGCTAGTCATTACTAGAAGGATTTGACCTCAAAAG TTTTCAATCAAACCTTACTGTAGCTTTTCTAAGGCTATAACAAACCTCGC TCATGCCTGTGTAAAACCCTGGGACCTATGTGCCCATGACACAAGACATA TCTACAGCCCTTTTTCCAATGAAACATTATCCCACACT

Coding sequence (CDS) from alignment at Sc0000042:337534..343771+

>Blg00516.6 ID=Blg00516.6|Name=Blg00516.6|organism=Branchiostoma lanceolatum|type=CDS|length=675bp|location=Sequence derived from alignment at Sc0000042:337534..343771+ (Branchiostoma lanceolatum)
ATGGCAGAAGGTGAGGGTGAGGCCGGGGTGAGCGCCATGCCCCTCCCTCC
CATGCAGTTCGTCAGCCAGTACACGACGGAGAACGTTTCCCGCGGCCTGG
CGCCCCCGCCGCCTCCACCAATCACAGACCAGTACTCCATGTTCGGCAGC
GACTACCAGGTGGACGACCAGATCATCCGACCGCTGGAGTCACAGGGAAT
CCGTCGTCTCCACCCCGACAAGTTTGACCACAAGCTGGAGCTGAAGAAGC
TGAACCACTCCATCCTGGTCAACTTCCTGGACCTGCTGGACATCCTCATC
AAGTCACCAAACACCCCGCGCAGGGAGGAAAAGATCGATGACCTGAACCT
GCTGTTCATCCACATGCACCACCTCATCAACGAGTACCGGCCGCACCAGG
CGCGGGAAACTCTCCGGGTCATGATGGAAGTGCAGAAACGACAGAGGCTG
GAGACGGCTGACAGGTTTCAGCAGCACCTGGACCGCGTCATCGACATGCT
GAAGCAGTGCGTGCAGTCCATGCCTGAGGACATAGGGGGCGCCTCTGACA
GCGAGGACATCAAGCCGGACCTGGAGGAGCTGAACAGACAGGCGGGGATC
TCGCAGAGCAAACGTGACGAGGACTATGGGAAAGACAGACTAATGTGCAG
CATAGTGGACAACATCAAGTCATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00516.6Blg00516.6-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00516.6-exon-Sc0000042-1570713199:337534..338177Blg00516.6-exon-Sc0000042-1570713199:337534..338177Branchiostoma lanceolatumexon
Blg00516.6-exon-Sc0000042-1570713199:338645..338850Blg00516.6-exon-Sc0000042-1570713199:338645..338850Branchiostoma lanceolatumexon
Blg00516.6-exon-Sc0000042-1570713199:339162..339289Blg00516.6-exon-Sc0000042-1570713199:339162..339289Branchiostoma lanceolatumexon
Blg00516.6-exon-Sc0000042-1570713199:339779..339919Blg00516.6-exon-Sc0000042-1570713199:339779..339919Branchiostoma lanceolatumexon
Blg00516.6-exon-Sc0000042-1570713199:340747..340945Blg00516.6-exon-Sc0000042-1570713199:340747..340945Branchiostoma lanceolatumexon
Blg00516.6-exon-Sc0000042-1570713199:342623..343771Blg00516.6-exon-Sc0000042-1570713199:342623..343771Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000042genomeSc0000042:337534..343771 +
Properties
Property NameValue
GeneIDBlg00516