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Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000042:338364..343771+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >Blg00516.5 ID=Blg00516.5|Name=Blg00516.5|organism=Branchiostoma lanceolatum|type=mRNA|length=5408bp|location=Sequence derived from alignment at Sc0000042:338364..343771+ (Branchiostoma lanceolatum)
TTATCGCATATCTAGCTTCATAGCTTCATACTATGTCGCATGCTGAGTAT
GTGTTTGCCTCTGCTACTGACTGCCAGGGCAAAATGAGAATTTTTTTTCA
AAGAAGGTGCAAATGATTGGAAAGTATAAAATGATTTTTATCTTTCATCA
CATAGCTTCAGAAGTTAAGAACTTAAGATAGTGGGAGATATATTTAAGAA
CTAATGGTGAATAAAATGTGCAAAGTGTTATGATAATTTGAAATGATAAA
CTTAAAGTTAAACTTTAATTTTTCATCACAGAACTGCAGAAGATGGCAGA
AGGTGAGGGTGAGGCCGGGGTGAGCGCCATGCCCCTCCCTCCCATGCAGT
TCGTCAGCCAGTACACGACGGAGAACGTTTCCCGCGGCCTGGCGCCCCCG
CCGCCTCCACCAATCACAGACCAGTACTCCATGTTCGGCAGCGACTACCA
GGTGGACGACCAGATCATCCGACCGCTGGAGTCACAGGTCGGAAGGGAAA
GACACGCTGTTTCCATAAAAATACTCTTTACTAGTACAAGGGCTGCCGAA
ACAGAGATGGGCACTGCCTTATGCACCTTCGGTGCGGGGAGGACTTTAAT
CCTGAAAGTGAAAGGATGCATCCGTGAATAAGTTTGTATATCACTAGTAC
TTGCCAATGCTTTTATGACTGTTTGTCACCTTCCTCAGGGCAGTACTGAC
TGGTTCTACTTGCAAACCCAAAAGTCACTGAGTTTGTATCCCCCTCATCA
TCATCAATGTACATGTAGAATTTACTCTAACACTGCCTTCCTCTGCAGGG
AATCCGTCGTCTCCACCCCGACAAGTTTGACCACAAGCTGGAGCTGAAGA
AGCTGAACCACTCCATCCTGGTCAACTTCCTGGACCTGCTGGACATCCTC
ATCAAGTCACCAAACACCCCGCGCAGGTCACTCTTTGTTTTATGTATCTG
TATCTGTAACTGTATCCATATTGTAGGGCTTAGACTGAGGCTGGATATCC
TCATCAAGTCACCAAACACCCCGCGCAGGTCACTCTTTGTTTTATGTATC
TGTTTCCATATTGCAGAGCTTAGCTTGAAAGTTTACCGGTGTTGGTAGAC
ATCACAATGCAGCAAAACTGAACTGTAACTTTCAATACAAAAAGGAGACT
TACCCATATTTTTGACTGTCCGACTCCAGTCTTTGTCCAGAAATGTGCAA
CCCACAATGCCACATTATGTAGGCAACAAATGAATTGGTCAGTAGTTGAT
CATAAACTACATGTACCATAATGAAGATTTTGATTCTATCATCTTTTTTT
TATTTATTGCTTTATATGGCCGTGGAAGAGGAGTTAAAGTTTAAATAAGA
AACCATAGATACGATTTGTTTTACGTGAATTTTTGCTTGTGTTTTCCTGT
GTCTTCATCAAAAAGGGAGGAAAAGATCGATGACCTGAACCTGCTGTTCA
TCCACATGCACCACCTCATCAACGAGTACCGGCCGCACCAGGCGCGGGAA
ACTCTCCGGGTCATGATGGAAGTGCAGAAACGACAGAGGCTGGAGACGGC
TGACAGGTCAGTACAGTCGGGCCTAACCATAACCACAGCCCTAACCCTAG
CCCTAACCACAGCCCTAACCCAACGAGTGCCGGCCGCACCAGGCGCGGGA
AACTCTCAGGGACATGATGGAGGTGCAGTAACGACAGAGGCTGGAGACGG
CTGACAGGTCAGTAATAACCCTAACCTGTACCAGTGTTCTCGCCAGGCCT
TTTCAGCATAGGGGCCCCCTATGCTGTGATTTGGACCCCCTATGCTGTGA
TCTGGACCCCTATGCTGTGTTTCAACCAGCATAGGGGTGCTTCTTTCTGG
GACAAACCTTGTGACCCTTCATAAATCTTATAAAAAGTTCATATTTGGCT
TTAGAATGAGGCTGTGACAGAGGAAAAACTCTACTTCACAAAATTTGTCC
CTCAAAATGCATGAAATAATGTCTCATTGGGTTATGAATTTACAAATTTT
CCAGGAGAACATGCCGGACTCCCTACTCTGGTCACTCCACGCATGACTTG
CACCGCGTTAAGTTGGCCTTCTGTACCTGACCCCTATGCTGTGAAAAAAT
CCTGGTGAGAACACTGTGTACCCTAACTCTAACCTAACAAGTACCGGCCG
CACCAGGCGCGGGAAACTCTCCGGGTTATGATGGAGGTGCAGAAACGGCA
GAGGCTGGAGACAGCCGACAGGTTTGTACAGATGTGCCCAACTGTAGTGT
TAAAAGGAAAACAACAATTCCTCAACCACCACTTGCTAACCACTGGTCTG
CATTCTGGCTATGCAGCAGTACCACCTAGCAGATTATGTAAGAACTGCAG
CATGATACAATGATTCTGTTTTCCCCACCCCAGGTTTCAGCAGCACCTGG
ACCGCGTCATCGACATGCTGAAGCAGTGCGTGCAGTCCATGCCTGAGGAC
ATAGGGGGCGCCTCTGACAGCGAGGACATCAAGCCGGACCTGGAGGAGCT
GAACAGACAGGCGGGGATCTCGCAGAGCAAACGTGACGAGGACTATGGGA
AAGACAGACTAATGTGCAGCATAGTGGACAACATCAAGTCATGATGAACA
TTCTTAGCTTCCAACCAGGGTTGAACAAGTTTTCAAAAATTCACTTGCCC
TATCGGGCAAGTAGAAAAAAAATCTACTTGCCCGAACCAACTTTTGACTT
GCCCGAAATCTAAATGACATTTTTTCTTTGCATCTTTGCTTGCGGTAATG
AATTCTGTTATTTTTCAGTAAAAACGTCTTGTTAAGCATGTAATTATAGC
AAAAAAGTTTTAACTACAAGACCAAGCTGTGTGGATGTCATGACCGTATT
TACGGGAAATGACAAAAACTTGAACAAGAAGCATGATATTACAACGTATC
TTCTTTCACTTAAACCACGCCAATTTCATTTGTTGCTTCTCAGATTTTTC
AGAATAAAATCAGAGCGATACGGAAAAAAAATTTGGCAAAAAGTCTAAGG
TAAAGACACAGGCTTATTTAACATAAAGAACAACATTCAAGTTTTCAGCA
AATGTTGTGTATCGATCATTCCTTAGATCCAGTACTACAATATTCCTGTG
TTCACTGAGGGCTATTATTATTCTCCCATTTCTTTAGTAAACAGAAGAAA
AAATCAGGTATTTGTCATATGATGGAAAAGTTACATTTAGAGTGTTGTGG
ATCTAATATAACTAAACATGGTTCTTATGATATGGCCAGTTTTGAATCAT
TGTCGTAAAATTNAAAAGTTACATTTAGAGTGTTGTGGATCTAATATAAC
TAAACATGGTTCTTATGATATGGCCAGTTTTGAATCATTGTCGTGAAATT
TTTATTTTCTAGATAACATTAGTCAATATCAATCCACACATGTACATCAA
ACAACACCTTCAAATGATTTTTTGCAGTATTAACATTTAGAAGTTGAACA
GAAATTTAGAATATCCTGAATATACACTCAATCAGTTAAAATGTTGTGGG
AACCCTCAGAGTGTGTCATATCCACAATGTTGCTGTTCAATGAAAGAAGG
AAAATGCTACATTGAGAGAGTGCTCACAGGGATATCATGTTTCAAAGGAT
TTGATGTTGCAAAGTTTCATGCCAGCAGGTCTACGAACTGAGAGAGCCAT
GGGTGTTTGTTTACATGTACTATGTGAGCCAAATTGTCCTGTTTTGGGTT
GAATTCATAATCTTTTGGAATATTTTGAAAGAAATGTAGTTTCTAATGAT
AAGATACATTGTGGTGTGGTGTTTTTGTGATCCTTTCACTGGAATAAAGT
TTGTTTTGAAACAGACTGCATGAAAAAATCTTACTTGCCCGATCGGGCAA
GTGGGGGAGGATATCCACTTGCCCGAACAGCACTTTCACTTGCCCCGGGC
AATCGGGCAACCATACTTGTTCAACCCTGCCAACACAAGGAGTCTGTCTG
ATTTTGTAGATTTGCACTGTACCCTTTATAGGCCATATTGTATCCAGTCT
GACTATGGAAAGACAGAGTCATGTACAGCATAGTGGACAACATCAAGTCA
TGATGAACATTCTAAACTTCCAACCTCCAACACAACAAGAAGTCTGTCCG
ATTTTGTAGATTTGCACCGTAGCCTTCATAGGCCATATTGCAGACAGTGG
AATTATGAGTAGGCAAGAGACACATGCTATGAAAACGCATATGGGGCCGT
GCATACTGTGTCCGGTCTGACTACGGAAAGACAGATTCATGAAAAGCATT
GTGGACAACATCAAGTCATGATGAACAGCTGAATATGTTTGGCAACATAA
TTAAGTATATAAGAATAAATATTGTCAGTATTGTTCCCAAATCTAGTTAG
CTCACGAGCTGATCTTCCATTGGTCGTAACAGGAAAAACGATATGTACAG
ATCATACAGTTTCATTGAACAGGCAAATTCCCCTAGCCCTTTTTGACAAG
TATACTGTATTAGCATACAGTTGAGAGCCTAACAACTCTGACTTTTAATG
TTAGGGATGAAATAGGTCTCAAGCAAGGAGTGACTGGAAATCAGTAAGTG
GACTACTGCTGTACTGATTCCTACACCATGTTTGTCATAGCCTGTGTTAC
CCAGTTTCTCACTGCCAGGGACTAATCCCCCTCCCCAAGACCCACAGTCA
AGCGAGCCACTAGGAGCATGAACAGTAAGGCCATGTGGTCCATATCTGTT
TCTCATTGGCCCACACCTCTGTGCAAGCACTACAGCAAGGGACTGGCTGA
GTTCTCTACATGTCCCTACTGGGCCATTGCAGCAGTCAGTGAACAATATG
AAGGATGTGTTCACCTGTACATACCGATCACATACATGTAGATGTATCCA
GTAATATCACCTATTTATTAGGTGCCTTGAAGGCAAAGGAGATGCAAAAC
GGAATGGGCATTAGCATAACTGCAAGATTTCATGCCAACTAGACCAATGA
CATTATCCAGATTTGTCATGTCCTTGACTGGACCAAATGTAACAAGGCCA
CAGCTTACAAACCTGTTTTCTTAATTCCTAGACTTGAGCTGATTTGGTAA
TAAATGGTGTCGCAAAATAAGCTTTTATTGGGATCATTTTATACAACTTT
GTCTTGTTCTTAACTCATCGATCTTATTAGGTTATCACTTAGCCTGAGTA
CCAGCCTGTTTATCTATTGTCCGCTCCCCACAATCCGCTACCAGATCGTG
AGGAGCGGACGAAAGCTAAAAAAGGCTGGTACTCAGGCTAGTCATTACTA
GAAGGATTTGACCTCAAAAGTTTTCAATCAAACCTTACTGTAGCTTTTCT
AAGGCTATAACAAACCTCGCTCATGCCTGTGTAAAACCCTGGGACCTATG
TGCCCATGACACAAGACATATCTACAGCCCTTTTTCCAATGAAACATTAT
CCCACACT Coding sequence (CDS) from alignment at Sc0000042:338364..343771+ >Blg00516.5 ID=Blg00516.5|Name=Blg00516.5|organism=Branchiostoma lanceolatum|type=CDS|length=675bp|location=Sequence derived from alignment at Sc0000042:338364..343771+ (Branchiostoma lanceolatum)
ATGGCAGAAGGTGAGGGTGAGGCCGGGGTGAGCGCCATGCCCCTCCCTCC
CATGCAGTTCGTCAGCCAGTACACGACGGAGAACGTTTCCCGCGGCCTGG
CGCCCCCGCCGCCTCCACCAATCACAGACCAGTACTCCATGTTCGGCAGC
GACTACCAGGTGGACGACCAGATCATCCGACCGCTGGAGTCACAGGGAAT
CCGTCGTCTCCACCCCGACAAGTTTGACCACAAGCTGGAGCTGAAGAAGC
TGAACCACTCCATCCTGGTCAACTTCCTGGACCTGCTGGACATCCTCATC
AAGTCACCAAACACCCCGCGCAGGGAGGAAAAGATCGATGACCTGAACCT
GCTGTTCATCCACATGCACCACCTCATCAACGAGTACCGGCCGCACCAGG
CGCGGGAAACTCTCCGGGTCATGATGGAAGTGCAGAAACGACAGAGGCTG
GAGACAGCCGACAGGTTTCAGCAGCACCTGGACCGCGTCATCGACATGCT
GAAGCAGTGCGTGCAGTCCATGCCTGAGGACATAGGGGGCGCCTCTGACA
GCGAGGACATCAAGCCGGACCTGGAGGAGCTGAACAGACAGGCGGGGATC
TCGCAGAGCAAACGTGACGAGGACTATGGGAAAGACAGACTAATGTGCAG
CATAGTGGACAACATCAAGTCATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Blg00516.5-exon-Sc0000042-1570713199:338364..338850 | Blg00516.5-exon-Sc0000042-1570713199:338364..338850 | Branchiostoma lanceolatum | exon |
| Blg00516.5-exon-Sc0000042-1570713199:339162..339289 | Blg00516.5-exon-Sc0000042-1570713199:339162..339289 | Branchiostoma lanceolatum | exon |
| Blg00516.5-exon-Sc0000042-1570713199:339779..339901 | Blg00516.5-exon-Sc0000042-1570713199:339779..339901 | Branchiostoma lanceolatum | exon |
| Blg00516.5-exon-Sc0000042-1570713199:340567..340584 | Blg00516.5-exon-Sc0000042-1570713199:340567..340584 | Branchiostoma lanceolatum | exon |
| Blg00516.5-exon-Sc0000042-1570713199:340747..340945 | Blg00516.5-exon-Sc0000042-1570713199:340747..340945 | Branchiostoma lanceolatum | exon |
| Blg00516.5-exon-Sc0000042-1570713199:342405..343771 | Blg00516.5-exon-Sc0000042-1570713199:342405..343771 | Branchiostoma lanceolatum | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000042 | genome | Sc0000042:338364..343771 + |
Properties
| Property Name | Value |
|---|
| GeneID | Blg00516 |
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