Blg00486.2 (mRNA) - B. lanceolatum

Overview
NameBlg00486.2
Unique NameBlg00486.2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000042:853685..860630+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00486.2 ID=Blg00486.2|Name=Blg00486.2|organism=Branchiostoma lanceolatum|type=mRNA|length=6946bp|location=Sequence derived from alignment at Sc0000042:853685..860630+ (Branchiostoma lanceolatum)
CTAATGTGTGATTGTCCTTTCCAGGACGTTGTCCCCTTCAGAGTGAAAGA
GTTGTTGAAAAAGTCATCAAAAGACCGGACAGAGGAAGAAGCAGACACGG
TCAGTAAATACTGGGCACTTTTGACATAAAGTGACTTTATTACCGATATC
TGTGTCGCTGATGAGTGTTCGTTCAATACAGAGCTGTATGTTTTTTCATA
TCATTTCTTTACTGTTTGAATGTACATTATTACAAGACAGTAACTAGCTA
CAGTATCAACATCAAGAAACATGCACGGAAGCGCTAGAAACCATAGTTCC
ATTAGCTTTAATGTTAGAATCACCGTTCAAAAATGAATCAAATCATCCCT
CTCGGCACGAAAGTTTAGTCCATACCAGACTAACTATAGTAAGCTTAACT
TTAAGCCTAGGCATTTTGGCCACTATAGGGTTTCATTGGCAGGCGCAGTT
TCGCCAATGGTGGAAATGTTATCCTTCGTGCGGACTGACTCTCTTGGCCA
ATTGTTCCCCTTTTGCCGAATTCTGCTCTCCGTAGCCACGTTGGGAGGCC
TGGTGGAGGCTAACGGAAGTCTCTAAAAGCAGAAGAGCACTGCTCTAAGC
ATCATAGTCTCGGATGATCGATTTCAGATGTTCCCCTCTTTACCCCTTTC
CTTCCAGATCGTCCGCACGATGCAGAAGATGCCCGACTTCGCGCTGTTCC
CGTTCGAGATCCAGAAACAGCTGTGCCAGGTGGCCTGGTACGACAGGTGC
GTAGCCCACCGTTATTTGTAGGGCGTTCTGCTTGTTTGTTACCATCAAAA
GAAGAAATTTAACCCCACACATACGTAACGTTAGAAAGCGTTACTTCCAC
TGTTGTTATTGTTACTTTGCTGCCAAGGGAGTAAAGTATTGTTTTAGCGT
TTCTGTATGTGTGTACCTCTGTGTGTGCGCGTGTGTGTTTGCCATTGCCT
TGTTGTTGACACTCGTACCTCTGGTTCCCAGTTTCGGGACGGGCCGTGTG
ATAATCCGGGAGGGCCACGCGGCAGACGGCTTCTACTTCGTCTTGTCGGG
AAGACGTAAGTGACGGAGAAGTGTGTCTTACAAATTGACAACACTTGGAG
ATCAAAAACCAAAGATATTGTTTGAAAAAAAAATCCAGGAACGCATGAAA
TCTTTAATCTTCAGGTCTTATAACTCCAGGGAGTCATGTGATAAAGAATA
TTCTTTTTTCACACGAATTTCTGTGTCCGCCACGGCACTTTATTTCTTAG
TCTCATGTCATGATACAGTGTATTTGCATCGAAAGATAAACTCATTATCC
CCATGTAGTCACATTAACAGCAATGTTTACACTTAATATGTATTGTAACA
TTAAATATCAAGTCCATCAACTCAGGACGGAGCCTTCTTTATTGTTCTTT
TATTTTTTTAAACAAATGTTTCTCAATTTCCTTCTCAGTCGTGGAGAGCT
ACGCTGCAGAGGACGAGGCCAACACAGTTCTACGGCACGGCATGAAGTTT
GGGGTAAGGACACACGATTCTTGCGGAAATTTCAAAGTGGTAAACTGTTT
AGAAAACTGGTCACGAGATGACTCCGAGCGAGCTCGACGGAGTGAGTGAG
TGTGTTCGAAAAGTAACGTTTATATCAGGATGACTAGCCCAAGTACCGAT
AGAACATAGTCTTCGTTTCCATTATGGGAAGGAGAGCAGCTACCATACCA
ACTGTTATTGTGTTTGTTTGTTTGTTTGTTTGTTTTTTACCCTAGGAACG
AGAGCTGCTGACGAGAACAAAACGAAAGTCTACAGTACTGACCCAGGAGA
GAACCGAACTGTTCTGTGTTCATGTGCAGGTAATCATTGGCAATGTGCCG
TGGCAACACTGTACACTTACGATAATACTTTATGACTGCCTAGATGTTAT
AAATTGTGCTATAAATTGCGCTTGTGGGCATTCCATTATCAGTACAGAGC
ATACTAGACTTGAGTTCTATAAGACGTTTGCAATATCTTATATCATATTT
CATAACATGTTTCATTTTTTTTCATTTCAGGATTATGTTAGAATATTCAA
CCTACAAGATGACATGGACACCGCCAACTTAAACGTCTGCAGGTACGTGC
TGACAACCATACGCAACCTTTAACGAGCTTGATTTTTCTGACTAAGAGAT
GCTGCTTCAATTGGCGTTAGTTCAGTACCTAGAAGTGGTCCATGTGGCCT
TGCACTGCAAACTTGTCAATATGCACGAACACTATGCTGATGAAGGTTAG
ACATCCAGACAAACAATGTTTCCAATGTTCCCATCCATCACTCTTTTTCA
GCGTCATCTTAAACATGTCACATATATCCCTACAGGCATCTTTCAATCTT
CAAACTGTGGCCGATCGACAAGTTACTGGAGCATCCTGACGCCTGGACCA
TGCAGAACTATCAGTAAGTACTGTAATCATTCACCACCACCAAATGTGGA
TGGTGACACGCACGGGGCGAGTAGTACAGTCTCCTGGCTCCCGAGAATCG
ATCCCGGGCCCGACAGCGCACACACCCAACGCACATACCACTAGGCTAAA
AGGTGTGGACCAGTTAGACTGGTCAGTAAGTGGCGCTTGAACCACACTGT
TACAATTGTATGCACAACGTAGTAAAACCTGTCTTTTATAGAGAACTTAA
TCCTATAGCCTATTCAATAACGAATGTCGTTTTCCTACAGACCGGGGTTT
GTCATTGTGCCGGACAGTAGAAGGTGCGACTGGATCTACGTAGTCAAGAC
GGTACGTGCTGGTGTTTGATATAAAGGTTTTGTTCATTAAGAGAGAGAGA
GAGGGGGGAGAGAGAGAGAGAAGGGGGGAGAGAGAGAGAGAGAGAGAGAG
AGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
AGAGGGAGGGAGAGAGAGAGAGAGAGAGAGGGAGAGGGAGAGAGAAAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGACAGACAGACAGAGAGAGA
CAGTGAGGCAGACAGACAGAGGGACAGAGAAAGAGTGAGAGAAATAGAGG
GAGAGAGAGAGTCTAAGAGAGAGGAAGAGAAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGGGAGACGTAAGTGAAACATAGTCAAAGGCAATTAACACCTAGCCTCCA
CCAGGCCGTCCTACGGGGATACGGATCGTAGAATTCGGCAACAAAGTTCA
ATAATTGGACAGGAGAGTCAGTCCACGGTAAGGTTAACCATTCCCCATCG
GACTGCGCCTGCAAATGAAGGCCTATGGTCCAAACTCTCTTGGCAATCGT
TCTCCCTATAGCCGGCGTAGTCAGCCTGGTAGAGATCAATAAACACCCCC
CCCCCCTTCCTCCCAGGGCCAGTGTAAGGTGCTGAAGAGACTGACGCCTA
ACGAGGGTTGGACGGTGGACCAGCGGGAGGAGAACAGACTGCTGCACAGC
CGCGAGATGGGGAGGGCGCACCGGGAGAGGAAGGAGCTCATCACGGCTCA
GGGGGACAGGGAGAAAGGTTTGTTTACTTGTTTGTTTGTTTGTTTGTTTG
TTTGTTTGTTTGTTGTGAGACCAGCGGGAGGAGAACAGACTGCTGCACAG
CCGCGAGATGGGGAGGGCGCACCGGGAGAGGAAGGAGCTCATCACGGCTC
AGGGGGACCGGGAGAAGGGTTTGTTTGCTTGTTTGTTTGTTTCTGTATTT
GTTTATCTTAGACCATTTAGAGGAGAACAGGCCTCAACAGGCTGCTGCAC
AACCGGGAGATGGGGAGGGCGCACCAGGAGCTCATCACGGCTCAGGGGGA
CAGGGAGAAGGGTTTTTTTTTATTTATTTTTTTTGAGACCAGGGGTAGGA
GAACAGGGCGACCGCGAGAAAGGTTTGCATGGGGACGTTTACTAAGGTCA
CGTGCCCATCGGGTCACGTGGCCATCAGGTCACGTGCCCGTAGAATTGGA
ATCATTCGTCCGGAAGAAGGATGTAGGGTTCTGTGTGCCGTCCCGTTTCC
GCGCCCTAGACACAGTGTATAAGTCCGGATTACACTTTTCTTGTTCTATT
ACTGACAGTTGTTGTATAGAAAAAAAGAGTTTGTTCATTCTTTGTTTACT
AGCACCAGCTAGGCACAGCCTCATTACCCCTAAGGGTACCTACTGGCTGA
ACTTCAAGGTGACATTCAAGGTGAACATTTATTGACTGACTTGACCTTGT
CTACAGATAACCGCGCGTTGATCAGCGTGCTGTGGCGGAACGTCTCCACC
CCGAGAACGCCGATCTCAGGGGTCCACACCGCACGGCTGGACAGCAGACA
CGACAACAGGGAGAAGGTGCCTTTGTTTACATCTATGTAATACATTAAAC
TTTAGGCCAAAATGGAAGCCTGTGAATCTATCAGATTGTATACAGACGGA
CAATATATAGCCAAATAGACACAAAATGATTCATCTAAAAGGAACCTCGA
AACTATTCGAAAGTGTTTTTTTAAAGATACATCAAGAGTACGGTAGAATG
TGAAGAAGACGCACAATGCCGTTATAAATTAACTTTGCATAAAAGTAACG
GTAGCGGTTTCCTAAGTGCCCAATGCCGCTAAGAAAATACATACACACCC
AACACAATCGTTTTCCCGTGCAAAGGAACCAACGAACGTCAACTTTGATG
ATATCTGTGTTGGAAAATAGAACCGTAAACAGAAAACAACAGACGTCAAT
TTATAATGGAACCATCTGAGTTGGCCGTAATCATAATACGATGCTAAACT
TTCTTCCGACACTAAGGTATTCACGGATTCACTTGTCAATAAAGTCACTT
GTCTGTAACTCTCGCGAGTTCACGTTCGGCAGTGATTGGTCATCATTCAT
CATGAAGAAGGCGACAGTGGTCGTCGAAAATTTGATCCGTGAATACCTTA
GTGTTGGAAGAAAGTTTAGCATTGTATTATGATTACTACCAACACGCACA
GATGAGCTTCCACCATAAATTGACGTCTGTTGTTTTCTGTTTACCGTACG
TCAGTTATAATGTCTACATCCATGTCCCCAGGGCCCGTCGCGCATGCAGC
TCGGCTCGCGCATTTTCGACCCGGACCCGTCCAAACCGGTCTTCGTGGTG
CTGGACGTGCTGGGACCCGGCCAAGCCTTCGTACGTACATCTGGCGTTAT
GTTTACGTCATTAAGATCCGTTATTCTATACATCGTAGTCAACGTGGAGA
AACTTCTTAAGTCATTAAGGTCAAGAGAATGAGAGAAAGAAATATGCATA
GAGAGATGGTCGCGTCCTAGCTATAGCCTCCAAACGGACTGTAACCGTAA
TGAATGCCTCATGCCGTAATATTCAATGAGTTTTGATTTTATCAAAGCAA
AATGGATCAATCAATCAATGAATAGTTTGGAGCATTAGTTATTGGAGTTA
ATAGTATGAGAACAGGAATGTTTTCTGTCAAAAGGTTGACTTAGTTAATT
TTATAAGAAGTTTATTGCAAGTTCATGCCCGTGGGCTAATTGCAAATACA
TGGTAAAAACATAGAGAAAAACATACATGCGTCAGTAAACTGTGTCTGAC
TTTGTTGTAACAATAGGCTACTGGTACTAAATACAATTGTTGGCTATATC
TAAACTAGCTGGGTTTGACTTCTTTTTCGGAAGCAGTGGAAGACGAAAAG
TCCCACTTTTTCTAGAATTTGTGAAAGAAGTGCATGATGTACCTCTGCTG
TTCTACCATTCCAGGGTTTTCGGTCCGTTCTCTCCTCGTCGGAAAGAGGC
CCGAGCGTGAGTTTGGTAAGTATTTCCTTTCATCGTCTTTACAGTGGAAG
ATCATACTGCAACTGTTCTTCAGGTTTATCTATTTATCAGAGACGTCACC
TTGTTCATATGATTTCGGGCAGTACATTTCTTTGAGGGTAGTACTTGTAA
CCGCTATCGTCATTGCACGTGCAGTTTGCCCGACACCCGAAAGTATCGTA
AAATAGAGGCCTCCTGTGCAGGCTCTACGAGTCTGTTTTTTGGGAGGATT
ATTTTTTTGTTGATTGCATATTGCACTCGGTTCTTTGTTGCCAGTCTGTA
CGAAAAACGAACCGAGTGCAGCAAAACCAATGTGTCACCAGAAAAAAAGC
CAAAATCGTAGAGTCTGCTAAGGAGGCTACCATAGGAGTGTTGGACGCGA
AAGGTGCAATTAGCTGCTCTTTCCATGAGATTCACTGATGATACACCTGT
TATTTCCAGGTCAGTAACTCCGCTGAAGTGATCCAGATTAGGAAGAAGTT
CTTCTTGAGATACGCGGACGAGACCATCTTAAGTCTCCTCAAAATGAAGG
TGAGACTTCTTTGCCACTGTCTCCGACACTTTGGTATCTATTGAGTAATC
AACCGATTGGTTGATCAATCGATTGGTTGATCGATGGATGGATGGATGGA
TGGATTGGTTAATCGATTGATTAATTGGTTGGTTGGTTGCTTGGTTGGTT
GGTTGGTTGGTTGGTTGGTTAGTTGGTTGGTTGGTTGGTTGATTAATTGA
TTGATTGATCGATTAATTGATTGATTACCTTTCAGTACACGCCGTTCCCC
TCCCAAGAGGACGTGCTGGAGAGCCTGTGGAAGGAGCACCAATGGGAGGA
CTTCAAGCGGGACGCGCTGTACCGCGCGGTCAGCAGCGTCACTTCGCGGC
AGGCGGTGCAACTGCAGAGACCGAAGACCACGAAAACGAACTAATCAAAA
TAATGCAGATTTTTGGTGAAGTGGAGCTTCTTATTGCCCCAATTAACGTG
GATCGAGTATCACAGTGTTGCATCGGGCGTAGATATTCCTAAGGGCGTCC
ACTGAGGTAGCAGGAACAACAGAAGCCGGTCAAGTGTTGAAGGAAC

Coding sequence (CDS) from alignment at Sc0000042:853685..860630+

>Blg00486.2 ID=Blg00486.2|Name=Blg00486.2|organism=Branchiostoma lanceolatum|type=CDS|length=1272bp|location=Sequence derived from alignment at Sc0000042:853685..860630+ (Branchiostoma lanceolatum)
ATGTGTGATTGTCCTTTCCAGGACGTTGTCCCCTTCAGAGTGAAAGAGTT
GTTGAAAAAGTCATCAAAAGACCGGACAGAGGAAGAAGCAGACACGATCG
TCCGCACGATGCAGAAGATGCCCGACTTCGCGCTGTTCCCGTTCGAGATC
CAGAAACAGCTGTGCCAGGTGGCCTGGTACGACAGTTTCGGGACGGGCCG
TGTGATAATCCGGGAGGGCCACGCGGCAGACGGCTTCTACTTCGTCTTGT
CGGGAAGACTCGTGGAGAGCTACGCTGCAGAGGACGAGGCCAACACAGTT
CTACGGCACGGCATGAAGTTTGGGGAACGAGAGCTGCTGACGAGAACAAA
ACGAAAGTCTACAGTACTGACCCAGGAGAGAACCGAACTGTTCTGTGTTC
ATGTGCAGGATTATGTTAGAATATTCAACCTACAAGATGACATGGACACC
GCCAACTTAAACGTCTGCAGGCATCTTTCAATCTTCAAACTGTGGCCGAT
CGACAAGTTACTGGAGCATCCTGACGCCTGGACCATGCAGAACTATCAAC
CGGGGTTTGTCATTGTGCCGGACAGTAGAAGGTGCGACTGGATCTACGTA
GTCAAGACGGGCCAGTGTAAGGTGCTGAAGAGACTGACGCCTAACGAGGG
TTGGACGGTGGACCAGCGGGAGGAGAACAGACTACTGCTGCACAGCCGCG
AGATGGGGAGGGCGCACCGGGAGAGGAAGGAGCTCATCACGGCTCAGGGG
GACCGGGAGAAGGATAACCGCGCGTTGATCAGCGTGCTGTGGCGGAACGT
CTCCACCCCGAGAACGCCGATCTCAGGGGTCCACACCGCACGGCTGGACA
GCAGACACGACAACAGGGAGAAGGGCCCGTCGCGCATGCAGCTCGGCTCG
CGCATTTTCGACCCGGACCCGTCCAAACCGGTCTTCGTGGTGCTGGACGT
GCTGGGACCCGGCCAAGCCTTCGGTTTTCGGTCCGTTCTCTCCTCGTCGG
AAAGAGGCCCGAGCGTGAGTTTGGTCAGTAACTCCGCTGAAGTGATCCAG
ATTAGGAAGAAGTTCTTCTTGAGATACGCGGACGAGACCATCTTAAGTCT
CCTCAAAATGAAGTACACGCCGTTCCCCTCCCAAGAGGACGTGCTGGAGA
GCCTGTGGAAGGAGCACCAATGGGAGGACTTCAAGCGGGACGCGCTGTAC
CGCGCGGTCAGCAGCGTCACTTCGCGGCAGGCGGTGCAACTGCAGAGACC
GAAGACCACGAAAACGAACTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00486.2-exon-Sc0000042-1570713199:853685..853783Blg00486.2-exon-Sc0000042-1570713199:853685..853783Branchiostoma lanceolatumexon
Blg00486.2-exon-Sc0000042-1570713199:854342..854430Blg00486.2-exon-Sc0000042-1570713199:854342..854430Branchiostoma lanceolatumexon
Blg00486.2-exon-Sc0000042-1570713199:854666..854739Blg00486.2-exon-Sc0000042-1570713199:854666..854739Branchiostoma lanceolatumexon
Blg00486.2-exon-Sc0000042-1570713199:855123..855187Blg00486.2-exon-Sc0000042-1570713199:855123..855187Branchiostoma lanceolatumexon
Blg00486.2-exon-Sc0000042-1570713199:855430..855513Blg00486.2-exon-Sc0000042-1570713199:855430..855513Branchiostoma lanceolatumexon
Blg00486.2-exon-Sc0000042-1570713199:855715..855776Blg00486.2-exon-Sc0000042-1570713199:855715..855776Branchiostoma lanceolatumexon
Blg00486.2-exon-Sc0000042-1570713199:856020..856097Blg00486.2-exon-Sc0000042-1570713199:856020..856097Branchiostoma lanceolatumexon
Blg00486.2-exon-Sc0000042-1570713199:856375..856435Blg00486.2-exon-Sc0000042-1570713199:856375..856435Branchiostoma lanceolatumexon
Blg00486.2-exon-Sc0000042-1570713199:857151..857224Blg00486.2-exon-Sc0000042-1570713199:857151..857224Branchiostoma lanceolatumexon
Blg00486.2-exon-Sc0000042-1570713199:857373..857452Blg00486.2-exon-Sc0000042-1570713199:857373..857452Branchiostoma lanceolatumexon
Blg00486.2-exon-Sc0000042-1570713199:857991..858100Blg00486.2-exon-Sc0000042-1570713199:857991..858100Branchiostoma lanceolatumexon
Blg00486.2-exon-Sc0000042-1570713199:858816..858914Blg00486.2-exon-Sc0000042-1570713199:858816..858914Branchiostoma lanceolatumexon
Blg00486.2-exon-Sc0000042-1570713199:859499..859549Blg00486.2-exon-Sc0000042-1570713199:859499..859549Branchiostoma lanceolatumexon
Blg00486.2-exon-Sc0000042-1570713199:859994..860083Blg00486.2-exon-Sc0000042-1570713199:859994..860083Branchiostoma lanceolatumexon
Blg00486.2-exon-Sc0000042-1570713199:860320..860630Blg00486.2-exon-Sc0000042-1570713199:860320..860630Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00486.2Blg00486.2-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000042genomeSc0000042:853685..860630 +
Properties
Property NameValue
GeneIDBlg00486