Blg00471.0 (mRNA) - B. lanceolatum

Overview
NameBlg00471.0
Unique NameBlg00471.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000042:1784872..1790887-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00471.0 ID=Blg00471.0|Name=Blg00471.0|organism=Branchiostoma lanceolatum|type=mRNA|length=6016bp|location=Sequence derived from alignment at Sc0000042:1784872..1790887- (Branchiostoma lanceolatum)
AGGTCGCATACCCGGAAGTGATCTGCACTGTGAGCTTTGCTCGGGTCCAC CAGTGGAAGGTACGTCTGCATCTATGTGTTGTCTGTTGGTCTTTCATGCC ATTAGGATTACCATTATCGTATATGTTAGCTACATCTTTGGTCTGATGGA GTAAATTTGAAACTACATGCAAAGACGGCTTCGAAGGTCATCGACCAGAA AGGCCGGGCACACTGATTTAGTGCATACGCCCCCCCCCCTAACTTTGTAG GACCATATATTTTAGCCTTTGATTAGGGGGTAGGGGTGGGTTGGTGCATG TGAAAAGATTTAAGACAGACACAAAGGCAGACCAGCCCTCTTTTGGAGTG GGGCATATAACAATGACAGTTCATTTTGCTGTAAAAACATCTCCTAACAC TAACAGGGTTTGCACACAGACAAACAAATAAACAAACACACACACAGATA GGCAAGCCAAAAAACAATACCTCATTCACCACATAGCAGTGATGTTACTC AAGCTAATGGATATGAAAAATGAAATTTCAGAAAATGTCAGATGTTTCAA GTAGCATCCACTACTTTTCGTCAGTGGCAAGATTTGCTGATAAGCAAGTT TTTTTTAAACCATGAACTATGAATTGATATTATACAATTTTAGATAGTAG GGAACAAATTTGACAAAGTTAAGACAAGGTTGATTCTCATTCCCTTGGGG TTTACATAGTTTTTCTCATCATACAGCACATTCGTAAGCCAGCAATGGGG CGAGTCCTGATCACCGGGGCGTCGGGCCTGCTGGGCCGCGCCCTCATGCA GGAGTTCCAGGGTGCGACCGGATGGGAGGTCCTCGGACTGGCCTACTCAC GAGCAGGGGGGAGGCTCAAGAAGGTGGACCTGCGAGACCAGGCAGCCGTG AGGGAGACTGTTCAGGAATTCAAGGTAGGCGCGTGTATGAAGAGACACAT TTGTGTGTTTGCGGTGCAGGACCACTGAGTAAACAGCATAATGCACACAC GTTTGATCCATTCACTCCAGGATACACACTGCAGAGTGGTTTCGAATGGT CAAGTGGCTAGGCCAGAGGACTCAAGATCAAGAGGTCATGGATTTGATTC CTGGCCTATCTGGTTCGACATTGCGTCCCAGGGAAAGGCAGTCTTTTACA TGACTTTTCTCACTCCACCCAGGTTTTTAAAAAATGGGTACCTGCCCTCG TTGGGGAGGTAACAGGCAGTGGAAGAAGAGGGTTGGGCTCTGCCTTCCAA AACCGTGCGCTAGACACTGTAGATAACAGCCCACTACCCCTATGGCCTCA AAAAGGCTACATGGGACTTTTTACAACAACCAGGTAATCTTACCTGCTGA CGTTTCGGTATCTGTCAGATACCTTCTTCAGAGCTTCTGACTGGAGTGCT GCTTCTCACCGCTATAAGTAGCCGATGTAGGTGGCGCTTTTGCGGTGAGA ACACTGTCCCAAATGCGGCTGAGTTTGTATGCCCCCTCGTCTCGGTTCAT CACCGGTGCTGTCTTCCTTATCCAGACCGCCTCCTTAATCCACCGGGTGC GTCTGTTGTCCTCTCTGTCGATGACCTTGGCCCCCTCCCAGTCAATGATG CAGTTGTGTCTGGCAATGTGGTCAGTGATTGCCGATTTTTTGTCTACTTG TTGTGCTTGTCTTTTCTGTGACCTTGTGTACTTTACCACTTCAATGCTGT CGGCTTCTTTCTTGTGTTCGTCCAATCTAGTCCCAAAGGTCCTTCCTGTT TCACCTATGTAGACTTCGTTGCAGCTCTTACATGGAATTTTGTACACACA ATCAGTTTTTACTAAGTCATCCAGTTTATCCTTAGGGTGCACTAGTGCAC AAACTCAGCCGCATTTGGGACAGTGTTCTCACCGCAAAAGCGCCACCTAC ATTGGCTACTTATAGCGGTGAGAAGCAGCACTCCAGTCAGAAGCTCTGAA GAAGGTATCTGACAGATACCGAAACGTCAGCAGGTAAGATTACCTGGTTG TTGTAAAAAGAACCTCTATACCCTATATTTTACCAACCTGATGAAATTAT TTTCGGATACATGGGACTGTCTTTATCTTTTAACATTTACTCCAGGATGG GTCGCTACCAAAAGAGAAGTGTGATGGGTACTCAGGATGTTCTGTTCTAT TCTTACCCTTTAAGAAACCTGGAGTTAGGCAAATCTTGTTGTTATCGTCT AAGTGGGTGAAGTCTGCTATCCAGGCCTGTCTCCAGCTTCAAAAGTTTTT CCATCCCACTATTTATTTGGGAGCCCATGTTGTCAATTTTAAAATACATT TTCATTAATTCTATGTCAAGAAGTTCAGATTCTTGCGACGAATGGAGTGA AATCTTTGTCCGTCCCAAGAAGCAAATTTCCATCCCAGGAGGGAGGGAGG AATGGGTCCTGGCCTTGAAACAGCCCTGCTGCCAGTTAGGCAAATCTTGT TGTTATCGTCTGAGGGGCTGAAGTCTGCCATCACTAGTGGTGTGGATCTT AACCCGAGTTTAGGTTTAGGTTCGGACTCGAGTCCAGAGGTTTAGGTTCA GGTCCGGACTTGAAAGTCCGGACCTGAACAATAATTTTGGAATATTTTTT CGTGTTACATGTAAAATTGCATATTGGCAGATATTTTACATGTAATTTGA AAACTATATATACGGAATTATATACAGTCAGTAATTAACACAAAAGTTCA GTTATAAACACAAAAACAGCAATGTTTTAATATTTTTCTAGTGCAAATTT CACGATTTAAGGAAGGTTTAAGATGGTTTAAAACAAAAAGGAGTGTACGA GTGAGAAAATTTTTTTTCAAGTCCGGACTTGTTTCCAGACGTTTAGGTTT TTTTGGACTTGAACCTAAATGTTTTACAAGTCCGGAACCGGTCCGGCCGG ACCGATCCGCACCACTAGCCATCACTCACGACTCGACTGTTTTCCAGCCC GACATCCTGATCCACTCCGCTGCCCAGAGAAGACCTGATGTGGTGGAGAA GGATGAGGAAGCGACGAGCGCTCTGAACGTGGAGGCCACGAGGACCGTGG CCCAGGCTGCAGGTAAGGGAACTCTAAACATGGACGCCATGAGGACCGTG GCCCAGGCTGCAGGTAAGGGAACTCTAAACATTGGATGCCACGAGGACTG TGGCTAAGGCTGCAGGTAAGGGAACTCTAAACATGGATGCCATGAGGACC GTGGCCCAGGCTGCAGGTAAGGGAACTCTAAACATGGATGCCATGAGGAC TGTGGCTAAGGCTGCAGGTAATGTGTACACACAATGGCTACTATTGTAAA AAAAGTCTATTTATTGAAGTAGACATTATTGTTCTTGTAGTATGAAGTTA ATTTTTAGTGTAGTGAAGGTTTGGACCCATTTCAGTTAATCCGTGCCTTC CTGGTGTACACAGGAAAATGAAAAAACAACAAAAACGAATTGATTGTCCA CCCACTGTTCATAAACTACGGTTTCACGACTTGCATCCATTCTACGCTTA TGATACTTGGGTTCATTATTCTTAACCCTTGTCCTGCAATTTATTTCATT AATTTTATTTCTTAATCATGTCATTTTTCCTTGACTTTTTCTGCACTACT GTGGCATAGTTAGTACTTACTTCCGCATTTTTTTCAGTTGAAAAATACCC CCAACTCATACATATACGGGACCAACATGAAGGCTCTGTAATGTGGAACC CATATATATACATGTAGGGGTCCCGCAGAACAAGGGTTAATGTAGTTTAT TCATACAGAGAAGGTTTTGATCCATTATTTATATTCCAGTTGATGTCGGT GCCTTTCTGGTGTACATCAGTACTGACTACGTGTTTGACGGCAAGTCTCC CCCCCACAAGGTGACGGACGCGCCGAATCCTCTCAACAAATACGGGGCCA GCAAACTGGCTGGGGAGAAGACTGCACTGGAGGTGGCCAAAGGTAAGGCA TCATCAAATTAACATGTTTGCACTCGGATTCACAATATTAGTGCTAAACT AGATGGTAAAAGGTGAAGGTAGTCCCATATAGCCTTTTTGAGGCTGTAGG GGCAGAGGGTTGTTATCCACTGTGTCTAGGGTATGGTATTGAAAGAGGGG CCCATTCCCAATCCTTTTACCTCCCCAACTGAAGTCAGGTACCCATTTTT TACACTTCGGTGGATTGAGGAAAGTTGTGTTAAGTGCCTTTCTCAAGTGG ACAATATCAGTGGCATTTCATGGGGTTCAAACTCAGGCCACAACGATCCA TGTGGCTGATGATAAAGTAGTGCAGATGCTATTATTTTCTATCTTACGAT TCATTGTACTTCAACATCAGACAGTGATGTACTGAGGGTGTCCATCCTAA AGTAAAGTATCAAACATGACAGGTCATGGGGTCAATGGAAGAAGCTACTA ATTCACAGGGAGGTTTTTTTAAAAATCTGCCTCATCAGACAGTGCTGTGC CGTGGGTGCCCATCCTGAAGTAAAGTATCAGACATGACAGGTCATGGGGT CAATGGAAGAAGCTACAAATTCACGGGGAGGTACTTTTTTTCAGACGGTG CTGTACTGAGGGTGCCCATCCTGTACGGACCCATTGAGGCCATTGACGAG AGCGCGGTGACGGTTCTCTTCGGCGCCGTGCAGAACTCGGGACAGGCGGC CAAGATGTCGGACTACGAGAGGAGGTACCCGACGCACGTGGGGGACGTCG CTGCGGTCTGCAGGCAGCTGGCTGAGAAAAGGCTACAGGTGAGGAGTTAT GTTAACCTTCTCCCTGCTGTCTACCTCTGCAACCAACAGGGAATTGGGTG CCAAATGGCTACTTCAGCGTGCTATAGGTTAAAATCCTTGTAAAGGACTA GATTATCACAAATCACATTTTACGATGCATTTAGAGAATGTGCATTTTGT TTAACTGCAAAAACACAGACAAAAAAAAACAATACGTCTCCATAAATTAG TAGCCTCTTCCATTGACCCCATGACCTGGAATGTCAGTCAGCTGTCACAT GAGGATGATAAATGACTAATTCTACCAACTCTGAATCCTACTTCCTTGTC GCTCCTGCACTCAGATGCATCAAAAACAATATCTTCATACAAGGGGGTAA AATGATGGCATTAAGACTGTGGTATAAAGGTGCTTCCTAGGCACTTGAGG TGTGGCTCTCCTCAAACCTGGGCCTCCAGCTTTACATTCCATCTGAGAGG ACGTCCCTAACTGAACCTAGGTACTCATTTTAGTAGAGGGAGGAAATAGG TGTTAAGTGCCTTTCCCAAGGCATAACATTTAGGCCAGCTAGAGATTTGA ACCCAGAACCATAAAATTGAAACCAAAAGACAACTATCCCGCCATTTCTG TCTTATGAGACTTTCCTGTTTTCCATTTCTAAAAATTTTTATTGAAATTG CATCACAGCAATACACAGGTTACTCAGGCAGCATTGATGATTTCGGGTGC CATCTAACATACACTAGAATGTTCACATATAAAATTTCTGTTTCCTGTTT TCCATTCACAGGACCCGAGTCTACATGGTGTGTTCCACTGGAGCGGAGAC GAGGAGATGACGAAGTACACGATGGCCGTTGCCATGGCGGAGGTCTTCAG CCTCCCCTCGTCTCACCTGGTGGCTGACAAGGAGCCTTCCGGGGGAGCCC CCCGCCCTTACAACGCATACCTGGACGTCTCAAGACTCCGGGATCTTGGG ATTGGGAAGACGAGGCCTTTTAGGGAAAGCATTAAGGAAGTCTTGCAACC TTTCCTGAAGAAGTAATTGTTCATGCAATATTTGAAAAATGTGGAAGAAA GATGTGCTGAGCAATGAAAAACAAAAGCTTGAGAACTACATTGTGTTCCC TTTAAAGCACTTCTTGGAGAAATCAGGATTGGGAAGACATGACCTTTTAA GGAGATCATTATGGAAGTCTTGCAACCTTTCCTGAAGAAGTCATTGGCAT TTCTTGATGTAACCTATCTGTCTTTGAAAAATCTGCACAATATAATGAAG GTGAGGGATTGTATAT

Coding sequence (CDS) from alignment at Sc0000042:1784872..1790887-

>Blg00471.0 ID=Blg00471.0|Name=Blg00471.0|organism=Branchiostoma lanceolatum|type=CDS|length=897bp|location=Sequence derived from alignment at Sc0000042:1784872..1790887- (Branchiostoma lanceolatum)
ATGGGGCGAGTCCTGATCACCGGGGCGTCGGGCCTGCTGGGCCGCGCCCT
CATGCAGGAGTTCCAGGGTGCGACCGGATGGGAGGTCCTCGGACTGGCCT
ACTCACGAGCAGGGGGGAGGCTCAAGAAGGTGGACCTGCGAGACCAGGCA
GCCGTGAGGGAGACTGTTCAGGAATTCAAGCCCGACATCCTGATCCACTC
CGCTGCCCAGAGAAGACCTGATGTGGTGGAGAAGGATGAGGAAGCGACGA
GCGCTCTGAACGTGGAGGCCACGAGGACCGTGGCCCAGGCTGCAGTTGAT
GTCGGTGCCTTTCTGGTGTACATCAGTACTGACTACGTGTTTGACGGCAA
GTCTCCCCCCCACAAGGTGACGGACGCGCCGAATCCTCTCAACAAATACG
GGGCCAGCAAACTGGCTGGGGAGAAGACTGCACTGGAGGTGGCCAAAGAC
GGTGCTGTACTGAGGGTGCCCATCCTGTACGGACCCATTGAGGCCATTGA
CGAGAGCGCGGTGACGGTTCTCTTCGGCGCCGTGCAGAACTCGGGACAGG
CGGCCAAGATGTCGGACTACGAGAGGAGGTACCCGACGCACGTGGGGGAC
GTCGCTGCGGTCTGCAGGCAGCTGGCTGAGAAAAGGCTACAGGACCCGAG
TCTACATGGTGTGTTCCACTGGAGCGGAGACGAGGAGATGACGAAGTACA
CGATGGCCGTTGCCATGGCGGAGGTCTTCAGCCTCCCCTCGTCTCACCTG
GTGGCTGACAAGGAGCCTTCCGGGGGAGCCCCCCGCCCTTACAACGCATA
CCTGGACGTCTCAAGACTCCGGGATCTTGGGATTGGGAAGACGAGGCCTT
TTAGGGAAAGCATTAAGGAAGTCTTGCAACCTTTCCTGAAGAAGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00471.0Blg00471.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00471.0-exon-Sc0000042-1570713199:1790829..1790887Blg00471.0-exon-Sc0000042-1570713199:1790829..1790887Branchiostoma lanceolatumexon
Blg00471.0-exon-Sc0000042-1570713199:1789964..1790178Blg00471.0-exon-Sc0000042-1570713199:1789964..1790178Branchiostoma lanceolatumexon
Blg00471.0-exon-Sc0000042-1570713199:1787826..1787940Blg00471.0-exon-Sc0000042-1570713199:1787826..1787940Branchiostoma lanceolatumexon
Blg00471.0-exon-Sc0000042-1570713199:1786946..1787098Blg00471.0-exon-Sc0000042-1570713199:1786946..1787098Branchiostoma lanceolatumexon
Blg00471.0-exon-Sc0000042-1570713199:1786150..1786343Blg00471.0-exon-Sc0000042-1570713199:1786150..1786343Branchiostoma lanceolatumexon
Blg00471.0-exon-Sc0000042-1570713199:1784872..1785376Blg00471.0-exon-Sc0000042-1570713199:1784872..1785376Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000042genomeSc0000042:1784872..1790887 -
Properties
Property NameValue
GeneIDBlg00471