Blg00446.0 (mRNA) - B. lanceolatum

Overview
NameBlg00446.0
Unique NameBlg00446.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000078:1082324..1084770-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00446.0 ID=Blg00446.0|Name=Blg00446.0|organism=Branchiostoma lanceolatum|type=mRNA|length=2447bp|location=Sequence derived from alignment at Sc0000078:1082324..1084770- (Branchiostoma lanceolatum)
ATGATTTGGGATCCCGGCCGGACTCTAAAGTCGCCCGGTAGCTGCAGGGT
GTCCCACGGCGCCACGCAAGGGTCAAGCCCGAACGTGAGAAAAAGTCCGT
CAACTACCCGGGAGAGCCCTTTTTCCCAATTGGGTACGAAGCATTAAGAG
TGGTGGCAGACTTATTATCTTATTAAGAGCTAGGTTCATGCGCAGAAAAT
GTGGCAAATGTAAAGGCCACTGAGACATTAACAAAATTCGCCTACACATG
TATTAAGCATGGTCTAAAACAATAGCTGTTTGTAAGTTAGGGGCCTCTAT
CAACCATAAATGCTTCAATTCATTGCTGAATATCTAGCACTTAGTCTAGA
AAAAATAACCAAATGAACGCCATTTGGCCCTTTTTTGTTTCTCCTAGGCG
CCATTGTGAATGTATCCAGTATTTGGGGGTTGCGTGCGGTAAGCTGTGTA
TTTTGTTTCGCTCCAGGCCACATGTACAAGAGGAATGTAAACATGTTCTT
TGAATTACCAAATTGATTTTGAAATTGCAAGAGCTTTATTGTAACACTTC
AATTTTCATTGCACTGTAGATGTTCAACCAGTATAACTGGAATTAGATAT
ATTTGCATTTTACAGCCACGACTTTTGAGAATTGTTTTCAAGCAAATTTC
ATGCTTTATATCTACATGTGCTCTAATTTACTTACAGACCCCTGATCATC
TTGCATACAGTATGAGCAAGGCAGCTGTGGACCAGTTCACAAGATGCGTG
GCACTAGGTTAGTAAATGTGTGCTTTGCTTCCAATGTTTGATCTACTTTC
ACTTAGTTATTTACCATATAATTCAGATTGATTCGGACCAGTAACAGACT
AAAAGGGGGCCAAGGAATGATATACAAACCACTGCAATGCCCTGATACAA
CACTTCTACAATCTCGTACGTTTGTATTAGAATATATCTATAAACCTGTT
ATGTTTTTTACACCGAACCTGAAAACAAAACTACCTTTTACTTTTCAGAG
CTAGCCTCCAAGCAAATTAGGGTCAACTCCGTCAAGTAAGTTCAAGTAAA
TTACCTTAAGCCCCTGTCACACTTGTGCGTGTATACAAGCCCGCATGAGT
TGCGTATTAACATGATTTTGGTTTAGGTTAAGTTTGCAGCCGAAGAAGTA
CTTTCTTTGGTTTGATAACTAGACTGCTCAGCGGTGGGTCAAAGTAGAAA
ACAACTTCCTCCACGCAAAATTTACTTAAACCAAAAAAATGTTACTGCGG
AACACATGCGCACATGAATATACGCACAAGTGTGACAGGGGCTTTAGATC
ATATTTTCGCGTGCGCGCGCGCGTGTGTTTGTAAACAGCATAACCCATAA
CTCGTGGATTGGTCTTAATGATATTTGGTATGTTGGTTTCTGTTTGCAAA
TGTAAAGAAAAATCATTAGATATGGGGCCCTTTAGCATCCGTTCTACGAC
ATCCAGAGTAAGTGATGTAGATATGTGCCCCCTAACGGCTTTCTTTCCAA
CTGCAGTGGGTATTTTTGTTGGAAACTTTGAAAGAATTGATGTAATTCGT
TATTTGTTTAAGACTGGAACTTCATACCTTTGAAGTATGAGATGGAGGTC
AAGGCGAACATTGTCAGAAAATGATTATGCAAATCATGGTCTTATTTGCA
TAGTTAATGTAAAAATGCATAGAAATTTTACCTTCTTTAGCATACAGTAT
GACATAGTCCCTAAGTGACTAGTGACAGCTGTTCAACAGCAGGATGGCCT
GGAATATTAGGCAACAGTTAGCCTGTGTGCCATCCGATTAATATCGGGGC
TTCGACACTCGCTACACTGATTTTAAAAAAAAAATTCAGGGTAGCGAGTA
TAGGAGCCCCGGTAGAAGCGGATGGCACACAGGCTAAGCAACAGTACGGT
GGGCAATTGACAATAAAGTTCCCTGGTTTCACTACTGCAGTTTTCTATCT
GTTCATCTGCACTGTAAGGAGACAAAATTATTCGGCGACTGTATGAGGTC
GTGGAGATCTAGTCGTTTCTGTTACTTGTATGTCTTATTGTTTTTGAGTT
GTAAGAGATTCATGTAAGGATAAGGCATTTGCTTCTTCTAAAATAAATGA
TACTTTTTTCTACAGCCCTGGTTTGATTCCGACAGAGATGTTAAAGCTTC
TAGGAAGAGCTAAAGAGCAACAAGTAAGAGTTGATTTTTTCATTAAACAT
CCGTTTACTTACTTTTCCTTTTTTTTCAAAAGCAATCCTAAGGTTTGGTC
CAACATGTACATACTTTGAGATATTTTTGCCTTCTCAGCTTCTGGAACAT
GCCAAGTCGACGCACGCCCTGGGCAGGGCAGGGAAGGTTGCAGAAGTCGC
CAAGACGATCGCGTTCCTCGCCTCGTCGGACGCGTCGTTCATTACCGGCG
CCCAGGTCCCCGTGGACGGCGGACGGCACGCGATGTGCCCGCGCTAA

Coding sequence (CDS) from alignment at Sc0000078:1082324..1084770-

>Blg00446.0 ID=Blg00446.0|Name=Blg00446.0|organism=Branchiostoma lanceolatum|type=CDS|length=408bp|location=Sequence derived from alignment at Sc0000078:1082324..1084770- (Branchiostoma lanceolatum)
ATGATTTGGGATCCCGGCCGGACTCTAAAGTCGCCCGGTAGCTGCAGGGT
GTCCCACGGCGCCACGCAAGGGTCAAGCCCGAACACCCCTGATCATCTTG
CATACAGTATGAGCAAGGCAGCTGTGGACCAGTTCACAAGATGCGTGGCA
CTAGAGCTAGCCTCCAAGCAAATTAGGGTCAACTCCGTCAACCCTGGTTT
GATTCCGACAGAGATGTTAAAGCTTCTAGGAAGAGCTAAAGAGCAACAAC
TTCTGGAACATGCCAAGTCGACGCACGCCCTGGGCAGGGCAGGGAAGGTT
GCAGAAGTCGCCAAGACGATCGCGTTCCTCGCCTCGTCGGACGCGTCGTT
CATTACCGGCGCCCAGGTCCCCGTGGACGGCGGACGGCACGCGATGTGCC
CGCGCTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00446.0Blg00446.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00446.0-exon-Sc0000078-1570713199:1084687..1084770Blg00446.0-exon-Sc0000078-1570713199:1084687..1084770Branchiostoma lanceolatumexon
Blg00446.0-exon-Sc0000078-1570713199:1084014..1084083Blg00446.0-exon-Sc0000078-1570713199:1084014..1084083Branchiostoma lanceolatumexon
Blg00446.0-exon-Sc0000078-1570713199:1083736..1083772Blg00446.0-exon-Sc0000078-1570713199:1083736..1083772Branchiostoma lanceolatumexon
Blg00446.0-exon-Sc0000078-1570713199:1082598..1082655Blg00446.0-exon-Sc0000078-1570713199:1082598..1082655Branchiostoma lanceolatumexon
Blg00446.0-exon-Sc0000078-1570713199:1082324..1082482Blg00446.0-exon-Sc0000078-1570713199:1082324..1082482Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000078genomeSc0000078:1082324..1084770 -
Properties
Property NameValue
GeneIDBlg00446