Blg00409.0 (mRNA) - B. lanceolatum

Overview
NameBlg00409.0
Unique NameBlg00409.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000078:342414..345480+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00409.0 ID=Blg00409.0|Name=Blg00409.0|organism=Branchiostoma lanceolatum|type=mRNA|length=3067bp|location=Sequence derived from alignment at Sc0000078:342414..345480+ (Branchiostoma lanceolatum)
ATGGAGGGTTCGAAGGACTCATTTCGGCGCGTAACACAAGAAGCTCACGC CAGCGCAGTCCGTCCTCGTTCCTACCGAGACGAGAGCTATCTGCACGGGT TTCTTGAAACTGTGGAAGACTTACAGAAGGCTGGGATGCTGCAGGATGTC GTCCTTGAAGTCGAGGGCCGGCGGTTTCCCTGCCATCGGCTTGTTCTGTC CGCGGCCAGCCCCTACTTCAGGGCCATGTTTACAAGTGACATGGCGGAAA GTCGGCAGAAGACGGTTGTTTTACAGGTAGGGTTGGCGTGACGTGTGGTT AGAATAGGAAATTTCGAAGATGCTACATATCATAGAGAATGTGTAAAACA ACGAAATGTAAATGTTTGTGCCCTGCATGCCCCCCTCCCCACTTAGCTCC CCACTTAGCGGTCAAAGGTCGCCCTTGCGGGTCACAATAGGGATTTTCTT TCAACCTCCAGTTATAAGAAACAGATCAAAATTTAGAATATGAGTGTAGA TAGAATAACAGAATAGGATTTAGATTTGACCTTTTTAGTTTTCTGTATCG TGTTGACAACCGCTCCTCGGAGTATTAGTTCTGTTGTAGTAGTATTCAGT CTATGTAGTCTACATAGTAGTCAGTTCATAACATTATATGTGGAAGAAAG TTTATACATGTACATTATCGTACCATAATCTGCTACAGGGTTTGGATGCA GGCATGTTTGGGGAGATCCTGAGTTACATCTACTCAGGAACCCTCCATGT GTCCCTGGACAAAGTGCAGCCCCTGTACCAGGCAGCCGACCTCCTCCAAC TGGACTATGTGAGAGACACCTGCACCAGCTACATGGTGGAAAACGTGAAA GTGGAGAGCTCTAACTGTGTGGACCTGTACAAGTTTGCCGATGTCTTCTC TGTGGACATTGTTCTCAATCGTTGTCAGCAATGGATCATTAAGCACTTTA CTGAGGTCCGTCTTCATAATGGCTCTGTCTATTGTCCATTATAAGAGCAA TCGTATTATATTTAAAGTGTTGAAATTGTAGTGCACACACAGGGAAGGTG ATGAGAGTACTGCTGACATGCCACATGCCTTTGAACCTGGTGTGGTACAC CAAAGGGTGGATACACCAACTTAAAAGATACATTTGCTTGTCATTTTTGA TCAGCTGGATAGATGTGCATGGAAGGGCAGTATGAAGACTAGCCAACTGC TGCCCACCCCTGCGTCTGGAACCCAGTTGTAGTATAATCAAATACTGGAT ACTATACTACATGTACACAGGAAGCTTCTTGTATTTCAGTCAAACATTTT TGCAACTTGCCTTGTTAGATATACCTGTACCCTGTTCATTCGCAGGTTGC TTCCATTTTTGCAACATGGAACATTTACATTTACTCTGTAACTCCACAGG TTGCCTCCAGCGAGGAGTTCTGCAGCCTTAGTGTGAATCAGCTCATTGAG ATCGTCAGCTACGATGAGCTGGATGTAAAAGAGGAGACAACAGTGTGGGA GGCTGTGGTGAGATGGGTGCAGCACAGCAGGGAGGACAGGTGGGTATCAG TTTTTTGTTGTTTCAGCTGAGTTCTCATATTGTTGTCGGTACTTGAACTA AGTATGATGTATCAAGAAGCTGCTGTGTTGCCAAGAAATCAGCTGAATCC ACCTTTACCTTGTACCCTACAGACAGCACCACCTACCCAGCATCCTCCCT CACATCCGCTTCAACCTGCTGACCTCAGACGACACGGCAACCATCTTGCA ACACCCACTAGTCAGGGAGGATCCTGGGAGTTCTGTCATCAGCAATGTGA TAAAGGAGACTGCCAATGTTAACAAGAAGAGGAGGGTTGGAATGGACTCA CTGGAAATGGCTCTGCTTTTTTCCACAAGGTGTGGGTCACATTCATTGTG GGGGGAAATGTGTGATAAATTGGATCGAAGCTGTACTAATTCATTTTCAT GGTAATTTAAATTGTCTAAGAAAATTAGCAAAAGGTCAAGATGAAAATAA AGGCTATGAGGAAAACTTAAACCTGACAATATTTACTCCCTGAAACTGTG TATCCTGAAACTTCAGACTTCTTTCAACTTGATGTGTTCCACTTGAGTAT GAACTTCATCAATCCTAGGACCATTAAAATTCAATTAGTGTGGCCTGATA ATTGAATGCATATTTATCTTTACAGTACAAGTGAGATGCTTTGGATGAAC CCAGAGAAGGGGAAGTACATCAGGTGTCACTACAACATAGCTCCAATTGT TGGGACTGTTACTAGTGATAATGACATCTACGTCCTGGCTAAAGATTCCG ATAGAAAGCATGCCCTGTTTAAGTACAACCATATCGGGAACAAATGGAAA CGTAAGTCTTCAATACGGAGATTAGACCTAAACTGTGACTACCCACCATC TGACTTCCTTATGGAAATTGATGGAGATCTGTTTTACGTTGTTGTGATAT CGCCAGGACCTAACGTGGTGTTGAGAAAGTACAACCAGTTCACGAAAAAG TGGCACACTGTGCCGCACACAAGTTTGACACCTCAACACGATGGGTGGTT CGATCCGAATGTGGCAGTGTGCTGCAATCGGCACATCTATGTGTTCACAC ATACGGAAATACATCGTTACGACCCAAGAACAGACCAGTGGTGCAGAAAA GCCTACCAAATGGAATTTCCTGTAGTTTGCACAGCCGTTGTCATGGGAAC AGAGATCTTCTTCACAGATAACAGAGACAAGTTATCGGTGTACGACACAG AGGCAGACACCTGGCGTGTGCTTCCAGGGTTGCTGAACGCAGATCAAGTC ATCGAAGACGTCACACTCTTTGTGATCCAAAACAAGCTGCATGCATTGAT AGAGACTTTAACTGACTCGAGTACAAACGAAGTCAGAAAAGAAGTTCGGC AGGTGTTTGTGTATGACAGGTGTGAAGGTGTTTGGAGAGAGTTGTCTGTC CTGCCTGACGGGCATTTGAATAGATGTGAACTGATGATCCCTGTGGCTCG TATGTACCTACCGTATTTGAACCATGCTGTTGAGACAGTGAATCCAGGGG GTGGACATGATGTATAG

Coding sequence (CDS) from alignment at Sc0000078:342414..345480+

>Blg00409.0 ID=Blg00409.0|Name=Blg00409.0|organism=Branchiostoma lanceolatum|type=CDS|length=1395bp|location=Sequence derived from alignment at Sc0000078:342414..345480+ (Branchiostoma lanceolatum)
ATGGAGGGTTCGAAGGACTCATTTCGGCGCGTAACACAAGAAGCTCACGC
CAGCGCAGTCCGTCCTCGTTCCTACCGAGACGAGAGCTATCTGCACGGGT
TTCTTGAAACTGTGGAAGACTTACAGAAGGCTGGGATGCTGCAGGATGTC
GTCCTTGAAGTCGAGGGCCGGCGGTTTCCCTGCCATCGGCTTGTTCTGTC
CGCGGCCAGCCCCTACTTCAGGGCCATGTTTACAAGTGACATGGCGGAAA
GTCGGCAGAAGACGGTTGTTTTACAGGGTTTGGATGCAGGCATGTTTGGG
GAGATCCTGAGTTACATCTACTCAGGAACCCTCCATGTGTCCCTGGACAA
AGTGCAGCCCCTGTACCAGGCAGCCGACCTCCTCCAACTGGACTATGTGA
GAGACACCTGCACCAGCTACATGGTGGAAAACGTGAAAGTGGAGAGCTCT
AACTGTGTGGACCTGTACAAGTTTGCCGATGTCTTCTCTGTTGCCTCCAG
CGAGGAGTTCTGCAGCCTTAGTGTGAATCAGCTCATTGAGATCGTCAGCT
ACGATGAGCTGGATGTAAAAGAGGAGACAACAGTGTGGGAGGCTGTGGTG
AGATGGGTGCAGCACAGCAGGGAGGACAGACAGCACCACCTACCCAGCAT
CCTCCCTCACATCCGCTTCAACCTGCTGACCTCAGACGACACGGCAACCA
TCTTGCAACACCCACTAGTCAGGGAGGATCCTGGGAGTTCTGTCATCAGC
AATGTGATAAAGGAGACTGCCAATGTTAACAAGAAGAGGAGGGTTGGAAT
GGACTCACTGGAAATGGCTCTGCTTTTTTCCACAAGTACAAGTGAGATGC
TTTGGATGAACCCAGAGAAGGGGAAGTACATCAGGTGTCACTACAACATA
GCTCCAATTGTTGGGACTGTTACTAGTGATAATGACATCTACGTCCTGGC
TAAAGATTCCGATAGAAAGCATGCCCTGTTTAAGTACAACCATATCGGGA
ACAAATGGAAACCCGTTGTCATGGGAACAGAGATCTTCTTCACAGATAAC
AGAGACAAGTTATCGGTGTACGACACAGAGGCAGACACCTGGCGTGTGCT
TCCAGGGTTGCTGAACGCAGATCAAGTCATCGAAGACGTCACACTCTTTG
TGATCCAAAACAAGCTGCATGCATTGATAGAGACTTTAACTGACTCGAGT
ACAAACGAAGTCAGAAAAGAAGTTCGGCAGGTGTTTGTGTATGACAGGTG
TGAAGGTGTTTGGAGAGAGTTGTCTGTCCTGCCTGACGGGCATTTGAATA
GATGTGAACTGATGATCCCTGTGGCTCGTATGTACCTACCGTATTTGAAC
CATGCTGTTGAGACAGTGAATCCAGGGGGTGGACATGATGTATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00409.0Blg00409.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00409.0-exon-Sc0000078-1570713199:342414..342689Blg00409.0-exon-Sc0000078-1570713199:342414..342689Branchiostoma lanceolatumexon
Blg00409.0-exon-Sc0000078-1570713199:343102..343314Blg00409.0-exon-Sc0000078-1570713199:343102..343314Branchiostoma lanceolatumexon
Blg00409.0-exon-Sc0000078-1570713199:343813..343952Blg00409.0-exon-Sc0000078-1570713199:343813..343952Branchiostoma lanceolatumexon
Blg00409.0-exon-Sc0000078-1570713199:344086..344292Blg00409.0-exon-Sc0000078-1570713199:344086..344292Branchiostoma lanceolatumexon
Blg00409.0-exon-Sc0000078-1570713199:344589..344764Blg00409.0-exon-Sc0000078-1570713199:344589..344764Branchiostoma lanceolatumexon
Blg00409.0-exon-Sc0000078-1570713199:345098..345480Blg00409.0-exon-Sc0000078-1570713199:345098..345480Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000078genomeSc0000078:342414..345480 +
Properties
Property NameValue
GeneIDBlg00409