Blg00403.0 (mRNA) - B. lanceolatum

Overview
NameBlg00403.0
Unique NameBlg00403.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000078:920697..928813+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00403.0 ID=Blg00403.0|Name=Blg00403.0|organism=Branchiostoma lanceolatum|type=mRNA|length=8117bp|location=Sequence derived from alignment at Sc0000078:920697..928813+ (Branchiostoma lanceolatum)
ATGAGCTTTGAGCTTGAATTGTCGTACCTTGCAACTAACCCCCCTCCCCT TCCCATCCCTCATTCCCATAGGAAACCTGGTGAGCCACCCCTGGAGCCGG GTCCTCTGCCTTACTTAGGTGTTGCCTTGGAGTTTTCCCAAAACCCCCTG GGCTTCATCACGTCCCGTTGGAGGAAATATGGCGACGTGTTCACCGTGCG GCTGGCCGGCCACTACACCACGTTCGTCCTGGACCCGCACTCCTTCACTC ACGCCATCCGGAACACCAGGTCAGGAGAAAAAGAAGTGTCGTAGATCAAG TTTGATCTGTTTCCTAATTATATTAACGTCTCAGATTGTACGAGTACATA TACTGTGCAGGTTACTGTTCGTTTTATTTGTTCCGCTTAACCTGTAAACC GCCTTTATACGCAACACAACAGTCTTGTCCAAGCTGCGTAAGGTATGATT CACTCACACCGGAATAGACCGATACCCCTACTCTTTTCAATAAGCGTAGA AGGATCTTGACGGTCTCACAGGACCTCCGGATTTAGGTACAATTCGAAAG GACGTCACTAGGTGCCCATTCTCACCTATTAGGATGATGTGAATTTGATA GTCATTCTTAGTGCTTACTTTAGCAAAAGGAAGTTCATTGAAAATGGGCT TTATTGGTGTCATTGTTAGGGTTCTGGACTTCCGAGTGTTTTCCAACAAG ATAGCCCATCGCGCTTTCGGCACGCCGATAGTGTACGGTACCCCCCGCGA CTGGGTCCGAGCCGACAGTGATGCGCTGTATCCACAGGAACTGCAAGGAC AGGGTTTGGACAAGGTCACAGAGGTAACGTTACATTCTTGCGGAGATTTT GTCAAATGGAATGCAATTTTGTCAATGATGGAATGCAAATCTGACACGTT TAGCCTTTGTTCTTCGCCCGTCGATCTGAAATTCTAAGTTGGATACTGCA TGACTCTGCTGGATAAGATTGACAATTGGAAACCGTCCATCTCGCTGTTC CAGGTCATGATGGGCAACCTTCAGTCCGCCATGCTGGCCGCCACAGACGT GAAGGCGGAGTGGAACAGAGGAGAGCTGTGGTCTTTTGTGTACAGGATCA TGTTTAGTGGTAAGCTAACCTGGAAGTCAGATGGTCGCATACTCCTCGGC TCCAGGGCCAACATGACCCGAGGAACCTTTGCCTCTCCCTCCTGCCGACT GAGAGTAACTCTGTCCGGAGTGCTGACCTTAGTTTCCATCGAGATGGGGT TGGCAAGGCTAGGCATAGTCTCCACGAAATGTAGCAGTTGAGCTTGTTTT GAGCGTATTTGGCGGTGTTTACGTTACAGAGATGCGCGCTTTTTACAAGT GCCAGTCGGGTACTAGTATCTCTTTTAAAAAAAAAAGAAGTACAAAACAC CTCAAGAAAACGTACAAAACCGCCAAACAAGCCAGACCGATGCATCTGCT TGGGGATTCGGTGGGCAAAGTTTCCAGGACATAAGTATCAAATAGAAGAA GATCAAGTTCACACAAGGAAGATTAAGTTTCCTTTAGAAGATCAGGTTTA CACATTTAAGAAAACTTATTCTAAAATGTTTTCAAGGGTAACCCTAAATT TCAAAAGCATAATGCACTTCCAACAACTCCGAGGTCATGCGCAATTTACC TTCTTTTCTGTTTATCACCATGCACCAAATTATGGAAGAAAAACTAGTAT GATAACGGCTTAGATTTCGTTAACATATTTTGCGCTCAACAGCGTCTTAC AAGACGCTGTTCGGGGGACACAAAGAACATAAAGACGAGACAGCACGACT GCTCCACGCCATGGAGGAATTCCAGAAGTACGACAAGAGGTTCCCAGAGA TCATTTCGAACGTACCGTGGTGGCTCATGGGACATACCAAGAAACGATAT GGATATCTGAAGGTATGTGACATACTAGTGCCCTGATTTGTTTCTTTTAA CGTGTTCTATCTTTCTTTGGAAATATATGCAAAAAGTTTCATTGAAAAGT GTAGGTATGAGGTGGACATGATATGTAGGTATGGCTGCTGCTTGTTCTTA GCGTCGCTAGTGTTGCAGCTAAGATATTCTCGTCTTATTGTATTTTTGTA TGTTTGTATGTGGTTTAGCAGCATAACTCATGAAGCTATGGATGGATTGC CATAAAATTCAGTATGTGATTAGATCAGACATGTTCTATTGAAGGACTTT GGGCCTCCTGGCAGCTTTTCGTGGTACTGCAGCAGAACACTCAGTTTGAC ATGTCTTGTTCTGGACACGCTATAGTCACGATTTGGATGGCAGATAGCCG CTTGTGCTCTCGAACAACTTTCTTTGGAGCATTTCAGGTGCTGAATTTGA AGCAGGATAGTTTAAGAAATTGGTATTGTATTTTCATTCTGAAATGTTTT CTTGCGCTTTTAGTCCATGGTATCTCCGGCTGAGCTCTGTCAGCGGGACG TCTCTGATTTCATCAGAATGAGGCAAAAGATCTACGGTGACGGAAATCTG TCTCCTGACGAAACGGCGGCTTTTAATTTCGGAACCATGTGGGCCTCGAT GGTAAGAATCAACATTGATGTTTAGATTCAAACAAAGGTGCATGTAAAAA ACGACACGTGAAACACCGCCTTTGGTCAGTTTGTAGTCTGGGATAGATTT CATCCGGACCCATTTTGTCAACAGTACAGAACATACAATATAACACACCC GGTGGCTGCGACAAGTACAGTCAAACCGGCATAAGAAGATCACTCAGGGG ACCGATAAGAACTTTTCTGTGTGGTCAGGTGGTCACTATAGCCAATGCAA ATGAAAATCTAATGGATCACCAAAAAGTGGTTACATTGGCCAGGTGGTCG TTATATGGAGGTGGTCACTTGTATGTTGTGTTTCACCCCTCCCCCTTCCC TTTCCATCACAGAGTAACACCGTCCCCGTGGCCTTCTGGACCTTGTACCA CCTGTTGAAAGATCCTGTCGCCATGGATGCAGTCAGGGTAGAGGTAAACC AGGTAACAATTACCACTATCTTCGGTTTCTTATCCAGATCTGTTTATCTT CTTTGTTTCCTTAGTATAAAAGTAATTTTTTAATGATCGGAAGATAGCAC TTGAAGGTAAAAATCCATGTCACGAAAGGTAATAACTTAACTGTTAATCT TCAATCTCTGTAGGTTTTGAAGGAGACCGGACAGAGTTTGGAAAATGTGA AGAAAGGGGACAAGATAGTTCATGTGACGAGACAGCAGTTGAATGGCATG AAATGCCTTGGTATGTGAGCGTTACGCCCTTTCCACTAGAGGCTGCGACC GCTGAGCGACGGCCGGGAGACCAAACACTACATCGCGCTCAAACTATAAA ATCAAAGATGACACCAATCTAATTTTGGTCGCTCAGCGATTGCCGTCTGG TGAAAAGTGGATCTTATTTATTAAGAGTCTCGATGTTAAAGACTGTTTGA ATATATATTTAAATGCAACAATCCCCACAATGCAAAAATAGGTAAATATT TAAACGACTGCTTTGACNTGTTCTATCTTTCTTTGGAAATATATGCAAAA AGTTTCATTGAAAAGTGTAGGTATGAGGTGGACATGATATGTAGGTATGG CTGCTGCTTGTTCTTAGCGTCGCTAGTGTTGCAGTTAAGATATTCTCGTC TTATTGTATTTTTGTATGTTTGTATGTGGTTTAGCAGCATAACTCATGAA GCTATGGATGGATTGCCATAAAATTCAGTATGTGATTAGATCAGACATGT TCTATTGAAGGACTTTGGGCCTCCTGGCAGCTTTTCGTGGTACTGCAGCA GAACACTCAGTTTGACATGTCTTGTTCTGGACACGCTATAGTCACGATTT GGATGGCAGATAGCCGCTTGTGCTCTCGAACAACTTTCTTTGGAGCATTT CAGGTGCTGAATTTGAAGCAGGATAGTTTAAGAAATTGGTATTGTATTTT CATTCTGAAATGTTTTCTTGCGCTTTTAGTCCATGGTATCTCCGGCTGAG CTCTGTCAGCGGGACGTCTCTGATTTCATCAGAATGAGGCAAAAGATCTA CGGTGACGGAAATCTGTCTCCTGACGAAACGGCGGCTTTTAATTTCGGAA CCATGTGGGCCTCGATGGTAAGAATCAACATTGATGTTTAGATTCAAACA AAGGTGCATGTAAAAAACGACACGTGAAACACCGCCTTTGGTCAGTTTGT AGTCTGGGATAGATTTCATCCGGACCCATTTTGTCAACAGTACAGAACAT ACAATATAACACACCCGGTGGCTGCGACAAGTACAGTCAAACCGGCATAA GAAGATCACTCAGGGGACCGATAAGAACTTTTCTGTGTGGTCAGGTGGTC ACTATAGCCAATGCAAATGAAAATCTAATGGATCACCAAAAAGTGGTTAC ATTGGCCAGGTGGTCGTTATATGGAGGTGGTCACTTGTATGTTGTGTTTC ACCCCTCCCCCTTCCCTTTCCATCACAGAGTAACACCGTCCCCGTGGCCT TCTGGACCTTGTACCACCTGTTGAAGGATCCTGTCGCCATGGATGCAGTC AGGGTAGAGGTAAACCAGGTAACAATTACCACTATCTTCGGTTTCTTATC CAGATCTGTTTATCTTCTTTGTTTCCTTAGTATAAAAGTAATTTTTTAAT GATCGGAAGATAGCACTTGAAGGTAAAAATCCATGTCACGAAAGGTAATA ACTTAACTGTTAATCTTCAATCTCTGTAGGTTTTGAAGGAGACCGGACAG AGTTTGGAAAATGTGAAGAAAGGGGACAAGATAGTTCATGTGACGAGACA GCAGTTGAATGGCATGAAATGCCTTGGTATGTGAGCGTTACGCCCTTTCC ACTAGAGGCTGCGACCGCTGAGCGACGGCCGGGAGACCAAACACTACATC GCGCTCAAACTATAAAATCAAAGATGACACCAATCTAATTTTGGTCGCTC AGCGATTGCCGTCTGGTGAAAAGTGGATCTTATTTATTAAGAGTCTCGAT GTTAAAGACTGTTTGAATATATATTTAAATGCAACAATCCCCACAATGCA AAAATAGGTAAATATTTAAACGACTGCTTTGACCGGTGCAATGGCCTAGT TGGTAGAGTGCGCGCCTTGCACACGGTAGGTCGTGAGTTCGAACCCCGGC CGGGTCATACCAAAGACTTTAAAAATGGTACATACTGCTTTCTCTGCTTA GCACTCAGCATTTGGGAAAGAGTATGGAAGTTAAACACACATCACTACCA GCGGACCAGCCCCCTGCTGTAGTGACTTGCACAAATGTGTGTGGCCCAAG GGCTATAGAAATGGAGATGGGCGCCACCCCTATGCGTCTTTTCAAGACGC CCGGGTCACTTTAACTTTAACTTTATCATTAGAAAAAACAACGAAACCAA TGATTAGCCCTACTCCATTATAACACTATATCCAAAAGGTATGCTAGCCC TTATTGTGTTGTATTAGTAATAAGGATGTTAAGTTTTATTCTGTACTTCT AAATTTGTATTATGTTTAAGAATTCCTGCCATACTTTGTACCGTGTACAA TTGTCCTGCAATAAAGTTCTTCTTCTATATTATCGAAGCTGAAAGCGTAC GCGATGTAGTTAGATTATTGCTGGTAAAAAAAAAGTATGTTTCCTCGAAG CCTCACTGGCATGTTTCCAGATGAGTCTAGCGTTATCCTGCTTGTGTAAT TTGTAGTTTATGTCTTAGTTTCTTAATACTTACTTTCCTTGCACAATATG GCTAATGAAAAACATATAAGACGTTGTAAGAGATGTACTTAAGTTTTGTG TCGATAATTATTGTTAAATGGAAGAAAAATGATGTGATTGAAATTCACAC ATTTTTTACAACTGATACAGGCAGCGCCATCAACGAGGCACTGCGCATGT GCAGTGCTTCTATGATCATCCGTGTCGCCACCGATGATGCTGAACTGGCC TTGGAATCCGGCAGTACCTTTCGTATCCGCAAGGGAGACAGGGTGGCTCT GTATCCAGGGTTTCTACACATGGACCCCGAAGTCTTTGACGATCCTGAGG TATACCTCTGTTGACATTTATAGCCTTTGCCAAAAGGGTTAATAATTTAT GTTTTCGGTGCCGTTTGTGGCTGTGTGTACGGTTGGTTGTGTTTTTGGTT GGATGCGTATGTGTGTGGACTCAAGACGCCGTTGATGGATCTTTGTGGTA TATTGTAGGTGGGTAGGTCAGGTAGGGGTCGGGAAGACCAGGGCCTTGTT CGATGATGGGCCACCTGGCGGTTTTGTACGGTACTAAAGCAGAAATTCCG TTTCTGATATCTCGTGTTCTGGATATACTATTGTCGTAATGTTTTGGTGG TAAATTGGTCTTGTTAGCTTGATATTTCACGATGTATTAATGGCACAATA CAAGACGACAACAAAAACAGAAGAAAAGCAGCCTTACAACAGAATGATCA AATTCAAATTTGAATTTCTCTTAAATTTGCTTCAGACCTTCAAGTACGAC CGTTTCCTGGAGAACGGTATGGAGAAGACCACGTTCTACAAGAAGGGCCG GAAATTACGCTACTATCTCCTGCCCTTCGGCCATGGCGTCAGCATGTGCC CCGGCCGTTTCTTTGCCCTGAACGAGATCAAGCAATTCGTCACCATCGCG GTCTGCTACTTCAACATGGATCTCCTGGAGAAGCACACTCCTCCCCAGGA CCAATCTCGGGCCGGGCTGGGGACTCTGGCTCCTCTGAAAGATTGTCTGT TCCGCTACAGGCTCAAATAGGTTCTCTTCTGCGAAACTCCCTCTGCCGGC ATTAGGGAACCTTAGCCCATGTGTATGCTTTGGCGGAGTGATAGATGCGT TACAATCTGTGTGTAACGAAAACGTAAATGCCCGCTCCCTCTAGGAACCC GGCGGATGTTGGGCGGGTCGCTATATCTAATACAAGCGCGATTTAAACAG GCTAGAAGCTTACTTGCGTACAATGAGCTACAAACTACGAAATAGGAAAT CAAACTTTCACGTTGTAAACAATAAAGGCTAATCTAAGTAAATATGCAAT ACAGTCAGGTTGTTATAGTCAGGTGGGCTAATTGTGGGTTTCAGAATCTA TTTTTCTAAGACCCCGTTTCAATTTGGCGACGATTGCTGAGTGACCTTTA AGCGAAAAATGGATATGTGTGGCCCTTTATCTTATAATTGGAATATTATG CACGATGCAAAATTATGATTTGAAATACAACAAATCGTTGAGCGATCTAT CAAATAATGTTTGGTCGCTCAGCGGTCGCAGCCTCTAGTGGAAAGTGGGT GAAATCAATGTTTTATGAATTTACCTATTGTTGCACTGTGAGTGTCCTGA ATGTGCAGTGACACTGCAAAAAGAACTGTCTTGACCAGTCAAATACTATA GCTAAGCTTAGTATACAGTGACTACGTTGATCTTTAACCGCTACGATGCC ATTCTACTGGGTGAAGACGAAAGCTCTCTCAACCAACAGCCTCCCGGCCC CCTTCTCTTACCTCTCCACATGTTATGTTGTAGTAAAGATATTTGTCAAT GTGATAACACATACATGTACAATAATCATGCAGCGGAGAAATAAATGTTG AAATCGACTAAGATATCGGCTGTATGTACGTTACTCTGTGTGTACCGGTA TAACCAAGGTATTGATTCCAATCAGGTAAAACAGTTTTCTCAGAAATTAT TACTTCGGTGATTCATCTTTTTCTGTTCTGTCGGGTCAGTCCGAGAANAA GACGACAACAAAAACAGAAGAAAAGCAGCCTTACAACAGAATGATCAAAT TCAAATTTGAATTTCTCTTAAATTTGCTGTAGACCTTCAAGTACGACCGT TTCCTGGAGAACGGTATGGAGAAGACCACTTTCTACAAGAAGGGCCGGAA ATTACTCTACTATCTCCTGCCCTTCGGCCATGGCGTCAGCATGTGCCCCG GCCGTTTCTTCGCCCTGAACGAGATCAAGCAATTCGTCACCATCGCGGTC TGCTACTTCAACATGGAGCTCCTGGAGCAGAACACTCCTCCCCAGGACCA ATCACGGGCCGGGCTGGGGACTCTGGCTCCTCTGAGAGATTGTCTGTTCC GCTACAGGCTCAAATAG

Coding sequence (CDS) from alignment at Sc0000078:920697..928813+

>Blg00403.0 ID=Blg00403.0|Name=Blg00403.0|organism=Branchiostoma lanceolatum|type=CDS|length=1488bp|location=Sequence derived from alignment at Sc0000078:920697..928813+ (Branchiostoma lanceolatum)
ATGAGCTTTGAGCTTGAATTGTCGTACCTTGCAACTAACCCCCCTCCCCT
TCCCATCCCTCATTCCCATAGGAAACCTGGTGAGCCACCCCTGGAGCCGG
GTCCTCTGCCTTACTTAGGTGTTGCCTTGGAGTTTTCCCAAAACCCCCTG
GGCTTCATCACGTCCCGTTGGAGGAAATATGGCGACGTGTTCACCGTGCG
GCTGGCCGGCCACTACACCACGTTCGTCCTGGACCCGCACTCCTTCACTC
ACGCCATCCGGAACACCAGGGTTCTGGACTTCCGAGTGTTTTCCAACAAG
ATAGCCCATCGCGCTTTCGGCACGCCGATAGTGTACGGTACCCCCCGCGA
CTGGGTCCGAGCCGACAGTGATGCGCTGTATCCACAGGAACTGCAAGGAC
AGGGTTTGGACAAGGTCACAGAGGTCATGATGGGCAACCTTCAGTCCGCC
ATGCTGGCCGCCACAGACGTGAAGGCGGAGTGGAACAGAGGAGAGCTGTG
GTCTTTTGTGTACAGGATCATGTTTAGTGCGTCTTACAAGACGCTGTTCG
GGGGACACAAAGAACATAAAGACGAGACAGCACGACTGCTCCACGCCATG
GAGGAATTCCAGAAGTACGACAAGAGGTTCCCAGAGATCATTTCGAACGT
ACCGTGGTGGCTCATGGGACATACCAAGAAACGATATGGATATCTGAAGT
CCATGGTATCTCCGGCTGAGCTCTGTCAGCGGGACGTCTCTGATTTCATC
AGAATGAGGCAAAAGATCTACGGTGACGGAAATCTGTCTCCTGACGAAAC
GGCGGCTTTTAATTTCGGAACCATGTGGGCCTCGATGAGTAACACCGTCC
CCGTGGCCTTCTGGACCTTGTACCACCTGTTGAAGGATCCTGTCGCCATG
GATGCAGTCAGGGTAGAGGTAAACCAGGTTTTGAAGGAGACCGGACAGAG
TTTGGAAAATGTGAAGAAAGGGGACAAGATAGTTCATGTGACGAGACAGC
AGTTGAATGGCATGAAATGCCTTGGCAGCGCCATCAACGAGGCACTGCGC
ATGTGCAGTGCTTCTATGATCATCCGTGTCGCCACCGATGATGCTGAACT
GGCCTTGGAATCCGGCAGTACCTTTCGTATCCGCAAGGGAGACAGGGTGG
CTCTGTATCCAGGGTTTCTACACATGGACCCCGAAGTCTTTGACGATCCT
GAGACCTTCAAGTACGACCGTTTCCTGGAGAACGGTATGGAGAAGACCAC
TTTCTACAAGAAGGGCCGGAAATTACTCTACTATCTCCTGCCCTTCGGCC
ATGGCGTCAGCATGTGCCCCGGCCGTTTCTTCGCCCTGAACGAGATCAAG
CAATTCGTCACCATCGCGGTCTGCTACTTCAACATGGAGCTCCTGGAGCA
GAACACTCCTCCCCAGGACCAATCACGGGCCGGGCTGGGGACTCTGGCTC
CTCTGAGAGATTGTCTGTTCCGCTACAGGCTCAAATAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00403.0-exon-Sc0000078-1570713199:920697..920965Blg00403.0-exon-Sc0000078-1570713199:920697..920965Branchiostoma lanceolatumexon
Blg00403.0-exon-Sc0000078-1570713199:921366..921519Blg00403.0-exon-Sc0000078-1570713199:921366..921519Branchiostoma lanceolatumexon
Blg00403.0-exon-Sc0000078-1570713199:921700..921805Blg00403.0-exon-Sc0000078-1570713199:921700..921805Branchiostoma lanceolatumexon
Blg00403.0-exon-Sc0000078-1570713199:922439..922608Blg00403.0-exon-Sc0000078-1570713199:922439..922608Branchiostoma lanceolatumexon
Blg00403.0-exon-Sc0000078-1570713199:923110..923247Blg00403.0-exon-Sc0000078-1570713199:923110..923247Branchiostoma lanceolatumexon
Blg00403.0-exon-Sc0000078-1570713199:925175..925264Blg00403.0-exon-Sc0000078-1570713199:925175..925264Branchiostoma lanceolatumexon
Blg00403.0-exon-Sc0000078-1570713199:925426..925522Blg00403.0-exon-Sc0000078-1570713199:925426..925522Branchiostoma lanceolatumexon
Blg00403.0-exon-Sc0000078-1570713199:926567..926745Blg00403.0-exon-Sc0000078-1570713199:926567..926745Branchiostoma lanceolatumexon
Blg00403.0-exon-Sc0000078-1570713199:928529..928813Blg00403.0-exon-Sc0000078-1570713199:928529..928813Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00403.0Blg00403.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000078genomeSc0000078:920697..928813 +
Properties
Property NameValue
GeneIDBlg00403