Blg00392.0 (mRNA) - B. lanceolatum

Overview
NameBlg00392.0
Unique NameBlg00392.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000318:284710..290726+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00392.0 ID=Blg00392.0|Name=Blg00392.0|organism=Branchiostoma lanceolatum|type=mRNA|length=6017bp|location=Sequence derived from alignment at Sc0000318:284710..290726+ (Branchiostoma lanceolatum)
AAACTTTTAATTTCGACCACGACAGCCGGTGTACGTGTTTCCCCTGCTTC AGAGCCCGGTCGGGGCCTAGATCTACTACCGGTTCAATTGCGACAGGATA TTTCAAAGTCCGAGGTTTCCACTTCGACCATGTGAACTGTTGGCCAATTC TCCTTTATTAGATCGTTACCTCCAGCTATGAATGTCTATATTGACTATCT GTATAGGTCCAGACTCTGAAGTTACATAGGCTTTCACATGCAACATATTC AAGGCATTTTGCTGCTTATGCGTCTTACCAAATTGCCCCAAAGCCATTTG CTTTCTTTGTTTGGCGTCTGACTTCGTGTGTGTTTTTTTTCGTTCCAGAT CCTAGCCATCATCTCCATCCTGTTCATCGTCCTGTCGACGATCGCCCTCT CCTTGAACACTCTCCCCAGCCTCCAGTACAGAGACGAGTTCAATCATATG ACGGACAACCCTACGCTGGCACATGTCGAGGCAGTCTGTATTGCATGGTT CACGATGGAATACCTTCTTCGCTTCATATCCTCCCCAAACAAGTGGAAAT TCTTCAAGGGTCCCCTGAATATCATCGATTTGACTGCTATCTTGCCGTAT TACGTCACGATCTTTTTGACGGAGTCAAATCGCAGCGTCATGCAGTTCCA GAACGTCCGCAGAGTGGTGCAAATTTTTCGAATCATGCGGATCTTGAGAA TATTGAAACTTGCCAGGCATTCTACTGGCCTGCAGTCTCTCGGTTATACG CTGAGACGGAGCTACAAAGAACTCGGACTACTGATTCTTTTTCTTGCCAT CGGCATTATGATTTTTTCTAGTTTGGTCTTCTTCGCTGAGAAGGACGAAA ATCCACAGTTCAAGAGTATCCCAGAGGCATTTTGGTGGGCCGGTATCACT ATGACGACGGTCGGATACGGTGATATTTACCCAACGACGCTACTCGGGAA AATCGTGGGCAGCCTGTGTTGTGTGTGCGGCGTGTTGGTGATCGCATTAC CTATTCCAATCATTGTGAACAATTTTTCCGAGTTCTATAAGGAGCAAAAG CGACAAGAAAAGGCCATCAAGCGCAGAGAAGCGCTAGAGAGGGCCAAGCG CAACGGTAGCATCGTCTCCATGAACTTAAGGGACGCTTTCCAGAGAAGTA TGGAGCTGCAGGACGTGGTGGTGGACACACAAACAAACAGTCCTGATAGC TCCATGCACGACGCTGTGTCACAAATCCACACCCCCAGCGGGACGGACAA GAGGCAGCTCTTCTGCCCCGACACCGCCGGGAAGGGTTATGACGCCCCCG GGGGCCGTATTACACCCACCCAAAGGGCAAACCCACACGACTTGGCCTAC ACGCATCCCCCTCCGTATGGGGTGTGCACCAGTCCAGTTGAAGGGGAGGA CAGGGAGCGAGAAAGCGACAACGAAAGTTTTGCCAGTTGTACGACAGAAT TTAATGAAACAGATACTCTGTTGGCTGAAGCAAGGGGGAGAGAAGACCTC TTGAGGAACTCTTTAAGTACTGAGAGGGCGCATCCTCCGCTTATGGCCTC ATACAGTGACGGTGGGAGGTCATCTTATTCATTTGAGGAGTTGCAACTTA AGGATGGGTCTAGAAAAAGCCTCTTGAAACAAGGAGTGAGAGGAAAGCGG GTTAAAGCTAAGGTGCGAATCAGCGAGGACGAGGAAATGCTGCGGACGCC GCTTCCGATGGTGCGGACTCACAGTGCGCCACCCGCGCCACAGATCATTC TCAGTCCTTCAAACTTACAAGTGCCGATCAAGGCGTACCCTCCGTCTCCG CTACCTCCTGTTTTGACCCCTCAACCTAGCCCCCTATACCAGCCACAGCA GGACCAAACACAAGCCACAGAGCCTCCTGGCGGGGTTAGTAGCAACAACA CGGAGGCGGCATCCGATACGGACAGTTCCTCCTCTCCCAAACAGAAGACA AAGACAGCAAAGATGCGCCTGAAAGAAAAACTCGGCAAAATGGGGTTGAG GAGTCGCCATGGCAACGGACTTCCTAAAAAGAAAGTCCCCACCGTTGGAA GGCGCTCCTCAACGTCCAGTTGTGAAGAAACAGGTGCCCGCAACGGCAGC ACGACGTCAGGGAGTGTGGGAAACATCGACGAAAACTTGCGATCTAGCGT GCCAGACAGTCCCTTACAATCTTCTCCGAGCGAGGTCGAAGATGAGCCGA AGAGAAATCCTAGCAGGGTAAAATTCTTTGCGCAACGAGCCGATCCGGAT GTGGAGCTGAAGGGTTTGAGTACACCTGATGTGACAAGTGAAGTTCAGAA CGAAATTGAAAATACGTCGAAGGACGTCACCTCCTCTGGCGAACCTTTGC CTAATGGTAACCAAGATTCGTCGTCAAGTAGCGACAAAAATGGTAACGTA GCTAATCACGTGACGCAAGGACCGCCCAAACTCGCGGTGCAGGTTGGGCC TATTAATGACGACGATATGGGGGACATGGAGACCATGTGCTAACACGCGT GTGCAACAAAAGTGGCGACCGTGTGACTTTTTTTTTTAATTCAACGTTGG CCAGTGCTTGCAAATATAAAGGCAGTGTATGTAGCATAATTCTTCCGATG CAATATCAGGTAACTGACTGGTGCCTTAGTGGTCCGGGCTTGGAGTATGT TTTCCCAGAGTCTTCTCGAGTAATACTCAACCACGGGGAAAGGCTTGTTG TATCAGAAATATAGTACAGCCGCGATTTCAGATATCACGGACTTTTGGGA ACGCCTTGTGCGACCACCGACACGCCGCATCCGATGACACAAGCCGCTCA CGGAGATATCGAGAACACGTTACTCTAGTTGGCTCTTTGTAAGCATACCC GAGCCATCAAAACGCAAGCACTGGCCATTACGAAATATAGCTAACAAGTA ATCTTCTAAAGTCAACTTTGAAATACATGAAAGCATACTTCAGACGCGTC AGAAAAACCGTGAAATTGAGGCATTTGCTGCAGAAAATTATGCAAATTAT GATGCAATGAACTGTGACACTCTGCAGCCTCATTTGCTGGCGTCTTCAAA TAACACTTGTCGAAGTCGTTATTCGACGGCGTCGTAATCAGTCGTATTGT TGTTGTTGTAGTTAATGTAACCGCGTAATGCTCTTTGTAGAACTCTAAGA GAATGTTTAAGACAAGTGAAATTACTTGCCGTCCCTCTCAGCGATCTCTG TTGGAGTCTTTACTTTTATGTCACAAGTTTGGCAGTACAGGAGTACCGAG ATGTTGGTGCTCAAATGTCACAGGGACGAATTGAAGCGAGCAAAAAGTAA GTCTCGCTCGTTTTTCGTTGTTAAGCTGAACTTGTTGGTCGTATTGAAGC CATTTAACAAACACAGCCTACCATAGGAGTTGCTGGTTCGATGAAGAACT ATGTGAACTTCGAAGCGGGTACGCCCAAGACTTGCAGTCAGATGATATCC CACACGTTTAGCGGTGACCAAACAGGAGGAAACGACAAGCCTAAGACGTC TGGACACAAGTATGTCAGTCACATGTTTGAATGCTAGTAGTAAAGATTTG ATTATGAACTCAAGATTGTTAACTGAACTGAACACTTATGTAGGAACATT GTAATCTTGTGCCCGGAAATGGCATCAGTGAAACCAAGATGGCACACTAG GTCAACAAAACTCCCGATAGACCGGAGCTTCGGTATGAAAATGACTGTGC AGTGCTGTTTTCTATGGAAGACGTATCAGCATATCCCACATAAGGACTTG GAGCTCACTGGTAAAGCGCACTTTGATCCAAGACTGTATTCTATAGCACT GGTATACAAAATTTTTTTAGAAATTAGTACCTTTGTAAATGACTATATAT CGAATTTTTCATCAGATCGTATCGCTTGACTTGTTTTAGATACACGTCGC TCAGACAGAAGAAAAATATGAGCCAACTTGGTAACAGAGATTTAGCAGAC GCAAAATTGGCTGGGACACACCCATTATGCTTGCACATATCTATTTGTTC TCTCTGTTGTCCGGCTTATTCACAACTTTCCTAGATTTGCGAGGGTGTCT CACTCCTTGTGCCACCATCTCAAGTGCAAGGCTTCCGGGAGACGGAGGAA TTTTTTGTATCCGAGACGTTATATACTTACAAGGTCAATGTTGTACTTTT TAGTCGTTTTTTTACGCCTTTGGCAAACACCATGTGATTGAAATTTTTCT TAAACACCAATGTTTGCAACTGACCATGGATTTGGGAACGTCGAGCCTTC AAAGAATTGCATCCCACAGTGGAGACAGGCTGGAGGCCTGCCCGCCCTAG CCTGGGGCCTCCTCCGCCTACATTGCCCCTGATGAGGACGAACAAAGTTG AAGTTGAAGAAGTCGAAAATGCATGTGCTATATTGACATCTCGGAAAATA GTGAATCATCTTTTTCTTTAAATGCATCAATACACAGCAAACCTAACAAC ACAAAATTTGAACGCAACTGCATAACTTTGTTTTGCATCAACACCGCGGG AAAAGTGAGTTACAGTATAACGTTATATGTATCACAGACGATTCCTCTGC CTTTCCTAACAAACACTTCGCAAGTCAGTAACAAAATAGCCATCAGCTGA AGAGGTCAGAAAATTGAGACGTTAGTCCTTATTCCGTTGAGTTTGGATTT TGATGTATACTGAGCCTATTCTATAATGTTCAACTTAGACATAACTTGGT TCAACACCCTTACTTCCAGGACAAACATACCCGTTATATACACTGCCGAA GGTAATTTCTAAAGCTTTTTGTAGACGCAAAAAAAAATCGAAAGTACTTA TTGTATTCGCAATACAGCAAATACCCAATGATAGAATGCATAGGTCAAAT ATTTTGTTTTATTACCTGCCGAAAATCTAAAACATTGAATTTAAGTCAAC GATTTTGACCATTCGCTATAGATCCATCCGACAGAATCTCTATGCACATA TTAGCCCATTCAGTATCCCTCTGCAACTTTGACTTTATTTGCACATCGAT CGCCCCAACAGTGAATGGAAAACAGGTCTGCGTTTTCGCGTTTGTTTGTT ACAGTTATTTGAAAATAAATAATTCGATCGGTATATCAGACCCATGATAA TATGTTTGCAAATGATACGATATCAAAACTCTAACGCCCTGAACATTTTG CATTGGCCGGAATACTTTTTCTGTAGGGGGAATTCCTAAAGCACGGCAAA ACTACTGACGATGGCCAATCTTTCGCTGGATTGATTCCGGATAAATTATC ATTTCATTGTTTGTTTTCAGTTCACAAAGAACGTGTTTGTCCTACCTGGA ACTACCGTAACAGTTTTCCCAGTACGTGTTAATCATTTCCAAATATTTGG CAAAGGTTGCGCAAAGTAAGTGCTGGCGACAAGAACTCCCAAATATACAT ATTATATATAAAAATCTACGGAATACATCTGCATGGTAAAATAACTTTCC GCCTGATTTAACAAAATAATTTAAGTGCCTGATGCACGTATTCAGTACGT ATTCGCTCCTCTCAGCACTTTCGCTTATTCGTATCATTTAGGTTTACAGT TTGTCTTACGTTAAACCGTTCTACAGTCCGTATCTGTAGACAGAAATGGC GGAAGTGAATATTTATAAGATATGTAACGTTAGTCTGCTTACTAGTACAT GTATATTTATTTGTGATAGAAATGAACACATGCATGTGATGTCCTAGGTT TTATGTTTGTTTTCGATAGCACAATATAAGCCAGGAGTAGAATCGTGGCC CTTTTGACAGCCCTTTTAGGCATTCCGTATTTCTTCCTACCTTGAATAGA AAAATGTTGACTGAACATAGTATCAAATGTCGTCTGACTTCTAGCCAAAT ATGCATCGCTGGGAACTCAAACAGTTCTAGAAACACATGTAAAACCCCCA TGCGTCTCTTGCTTTGCCTACATAATAAGGGTGGATACGAGTTTGTATAT GTACATATATGTATCAAGTAAAATGAAACAAACTTGAGGATAGAAAATAA AGTTGACGAAACCTTTT

Coding sequence (CDS) from alignment at Sc0000318:284710..290726+

>Blg00392.0 ID=Blg00392.0|Name=Blg00392.0|organism=Branchiostoma lanceolatum|type=CDS|length=2046bp|location=Sequence derived from alignment at Sc0000318:284710..290726+ (Branchiostoma lanceolatum)
ATGACGGACAACCCTACGCTGGCACATGTCGAGGCAGTCTGTATTGCATG
GTTCACGATGGAATACCTTCTTCGCTTCATATCCTCCCCAAACAAGTGGA
AATTCTTCAAGGGTCCCCTGAATATCATCGATTTGACTGCTATCTTGCCG
TATTACGTCACGATCTTTTTGACGGAGTCAAATCGCAGCGTCATGCAGTT
CCAGAACGTCCGCAGAGTGGTGCAAATTTTTCGAATCATGCGGATCTTGA
GAATATTGAAACTTGCCAGGCATTCTACTGGCCTGCAGTCTCTCGGTTAT
ACGCTGAGACGGAGCTACAAAGAACTCGGACTACTGATTCTTTTTCTTGC
CATCGGCATTATGATTTTTTCTAGTTTGGTCTTCTTCGCTGAGAAGGACG
AAAATCCACAGTTCAAGAGTATCCCAGAGGCATTTTGGTGGGCCGGTATC
ACTATGACGACGGTCGGATACGGTGATATTTACCCAACGACGCTACTCGG
GAAAATCGTGGGCAGCCTGTGTTGTGTGTGCGGCGTGTTGGTGATCGCAT
TACCTATTCCAATCATTGTGAACAATTTTTCCGAGTTCTATAAGGAGCAA
AAGCGACAAGAAAAGGCCATCAAGCGCAGAGAAGCGCTAGAGAGGGCCAA
GCGCAACGGTAGCATCGTCTCCATGAACTTAAGGGACGCTTTCCAGAGAA
GTATGGAGCTGCAGGACGTGGTGGTGGACACACAAACAAACAGTCCTGAT
AGCTCCATGCACGACGCTGTGTCACAAATCCACACCCCCAGCGGGACGGA
CAAGAGGCAGCTCTTCTGCCCCGACACCGCCGGGAAGGGTTATGACGCCC
CCGGGGGCCGTATTACACCCACCCAAAGGGCAAACCCACACGACTTGGCC
TACACGCATCCCCCTCCGTATGGGGTGTGCACCAGTCCAGTTGAAGGGGA
GGACAGGGAGCGAGAAAGCGACAACGAAAGTTTTGCCAGTTGTACGACAG
AATTTAATGAAACAGATACTCTGTTGGCTGAAGCAAGGGGGAGAGAAGAC
CTCTTGAGGAACTCTTTAAGTACTGAGAGGGCGCATCCTCCGCTTATGGC
CTCATACAGTGACGGTGGGAGGTCATCTTATTCATTTGAGGAGTTGCAAC
TTAAGGATGGGTCTAGAAAAAGCCTCTTGAAACAAGGAGTGAGAGGAAAG
CGGGTTAAAGCTAAGGTGCGAATCAGCGAGGACGAGGAAATGCTGCGGAC
GCCGCTTCCGATGGTGCGGACTCACAGTGCGCCACCCGCGCCACAGATCA
TTCTCAGTCCTTCAAACTTACAAGTGCCGATCAAGGCGTACCCTCCGTCT
CCGCTACCTCCTGTTTTGACCCCTCAACCTAGCCCCCTATACCAGCCACA
GCAGGACCAAACACAAGCCACAGAGCCTCCTGGCGGGGTTAGTAGCAACA
ACACGGAGGCGGCATCCGATACGGACAGTTCCTCCTCTCCCAAACAGAAG
ACAAAGACAGCAAAGATGCGCCTGAAAGAAAAACTCGGCAAAATGGGGTT
GAGGAGTCGCCATGGCAACGGACTTCCTAAAAAGAAAGTCCCCACCGTTG
GAAGGCGCTCCTCAACGTCCAGTTGTGAAGAAACAGGTGCCCGCAACGGC
AGCACGACGTCAGGGAGTGTGGGAAACATCGACGAAAACTTGCGATCTAG
CGTGCCAGACAGTCCCTTACAATCTTCTCCGAGCGAGGTCGAAGATGAGC
CGAAGAGAAATCCTAGCAGGGTAAAATTCTTTGCGCAACGAGCCGATCCG
GATGTGGAGCTGAAGGGTTTGAGTACACCTGATGTGACAAGTGAAGTTCA
GAACGAAATTGAAAATACGTCGAAGGACGTCACCTCCTCTGGCGAACCTT
TGCCTAATGGTAACCAAGATTCGTCGTCAAGTAGCGACAAAAATGGTAAC
GTAGCTAATCACGTGACGCAAGGACCGCCCAAACTCGCGGTGCAGGTTGG
GCCTATTAATGACGACGATATGGGGGACATGGAGACCATGTGCTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00392.0-exon-Sc0000318-1570713199:284710..284739Blg00392.0-exon-Sc0000318-1570713199:284710..284739Branchiostoma lanceolatumexon
Blg00392.0-exon-Sc0000318-1570713199:285058..290726Blg00392.0-exon-Sc0000318-1570713199:285058..290726Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00392.0Blg00392.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000318genomeSc0000318:284710..290726 +
Properties
Property NameValue
GeneIDBlg00392