Blg00380.0 (mRNA) - B. lanceolatum

Overview
NameBlg00380.0
Unique NameBlg00380.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000477:81498..85717+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00380.0 ID=Blg00380.0|Name=Blg00380.0|organism=Branchiostoma lanceolatum|type=mRNA|length=4220bp|location=Sequence derived from alignment at Sc0000477:81498..85717+ (Branchiostoma lanceolatum)
ATGGCGTCCGGACTGTTGCTCTTTATTTCTGGTCTGTTTCTAAGGATCGG AGGAGTATTTTCTGAGGAGTTTGTCATCCTGGTTATCCAACCTCAAAATG TGAGTTACGCGTGGTCGTTAGACAAGATAACTTCGACAGTCGAATTGGCG CTTGACACTCTAAGCGATACGGGCCTGTTGGGGCAAAATACCTTCAAGAT CCATACCGAAGACTCAGAATGCAACAACTACAAAACCAAGGTCAAGTTGT TGGACACGTACTATGTGGATTTGGTCAGGCCGAGCGTCGTGATCGGTCCG ACTTGTCCCTTTGCGGTGACGGAGACGAGTCGGCTGGCTAGTCAGTGGTG GGTTCCCGTTCTCACCGCCGGAGGCACCTCCGCAACACTCCGCTCCAACA GTGACTACGAGAGTGAGTTCAAAATGCTGATCAGGATGGGTCAAACAGAC GGCGAAATGGCCGACGCGGTAGCACGTTTCCTCTCGGATCCGACGGTAAA CTTTACTCGACCGGAATATCGGCTAGCAATGGTGTACCACTCAGAGCCAA CGGACGTCCAACAGAGACCATGTACCTTCCGTATGACCGCCATCAGGGAA AGTCTGAAAAAGCTAAGCGAGACCACCGGTACCATTATCAATGTGGTAAA GGATGAAGAATACACCAACAGTACTTACCAACAGAACACCAACTTCGTCG ACATTTTAGATGACATCAAGAGCTTAGCAAGAGGTACGTGCATAACACAT CTAAACGTGTTAATTATCACTTATGAACTTTTTATAACATTGGTAGTAAT CATGATAAACCAAGGATAAACAGACAAAAATATGAAACTCGTTCTGATGA GTTGCCTTTTTATCAAAATGTTGACAGTTGAAGTCATTATAGTTAGAGTC ATACTAATGATATGAAATAATTCACTGGGTCTTCCATGGTTTCTGTCTTT TTTTCAAATTTTCTTAAACGTTACAAGTTGGGAATTTGTCTTTGCTAAGA TCACATGTTCGCCAATGAGTTTATCTTACATAAAACTATGCCATCGTCTG TTTTATTTGCGTGTTTAATCGTTGACTGGTTTCGCCATTGCTTGTTTATT TGACTGTTACCTATAATTATCTTTGAATCTATTTCCATGAAATTGTGTCT TGTAGGGAAAGTCTTGATTTGAGGAAAATGAATTTTCGGGCCCCTAGTAG CTCCCTTCTGAACTGCAGCTTCCCTTGAAATTGCAGATCATGTGCATTCA AATGCTTTGCGGATTTTTCTATCCCAGAGGCGTTTTGCATTCTTTCTTTT TAATAAAGGTCTTTGTCTCAGGATGAAAAATAATAAAATTTTGATCAATG TAAACTTGAATGGATTTAAATCTGAATGGATACATTCCTTGCACTTGNGA ATGGATACATCCCTTGCACTTGGTTGAAGGTTTGAGTTCTTCAAGTGTAT GCTCTTCTTCCAATAACAGTCCATCTATCTGGATGAAAGTTTGGAACACT TCCACACTTTATCTCGTCATTTTAGCCATGTGGTCAAATATTGATGTGTT CTTGGGGAATCTTAATTTTTTTTCTTATTATGATTAGGTAAGATTTAGAT TGCAAGTCTCTGATTGATATTTCTTCCCATAGAATATCAGAACCGTAAAG TGGTCAGTGGTTGTACTTGGTAGAGACAACACTTACGTGGGCGTTTCTGG TAATTTTTTATACATATATATATATATATGTATCATGTAGCATGAAACGG TTTATTGCAGTAGGATAAGTCAAACAGTGCGACTTATCACTGCATTATTG CAGTCCCACTTACATCTAACGGGCTGCTTAATTGATTTACAACGGGGCTA TTTGATTGGCTCGCTGCAAAGTCGGTTTTAATGAGATATAAAAGACGGCC TTGTCGTCCAAGCAAGCGTCATGCCCATATGGCGACCTGTTTACTCATAA TGACGGCCATGTTTTCCGTGTAAACAGTGTCGAGTAACACCGTTGTAACA AGCGTTCTTAAAACAAGCGTTTTTACAACTTCTTGACACAATGCTCCCAT TTTCTTACGCCAGAAAATTACCCTGTAGTTGAGATTGGTAAACAATATAC AAATCAAGGGTAGTATCGTCGAGATCGATATATATATCTCGCCTTTGTGA CGTTTTATTAGTCTCTACCAGACTAACCACGCCAGATATAGGGAGAATAT TTGCCAGTAGAGTTTGGCCACCGTAGAGTAACTTTTGTAGGCGCGGGGGA AATATATACCTTACCGTGGACCGACTCTACTGGCCAATTATACCTTTTTT GCCAAATTCTACGATCCATGCCCCCGTAGGAAGGGCTGGTGGAGGCTAAC GTTTTATAGGGGTCGTTATCAATAAATAACGGTTGTTAATGATTGACAGT TATAAGCCTAGGCAGACGGAAATGTCACAGAGGTACTTGTAGACCTCTTG GGTACATGATGGCGGCTAAACTCTTCATGGTAAAGCTAGCAGTACTTCTG TGGTGTTGTAGTAAGACACAGGCCGAGACCTTTACCGTCCTGATAGTTCA GCCGAGGCAGGCGACGTACCCCTGGCGAGCTCAGAGCCTTGCGCCGTACG TTCTTGACCAGATCGAGCCAACCGTCGCGTTCGCGATCGAAGAGTTGCGA GAAAATGGAGTGTTGGGCAACAGTAACACTTTCCACATCGACACCTTTGA CTCGGCTTGCAGCTACTACATAGCTTTAACCGAGCTTTTAGACGCTTACT ACCAAGACTCCTTGAAACCGAGCGTCATCATCGGGCCCACTTGTCTCTAC GCGACGACTGAGGTAAGTCGGCTGGCTAGTCATTGGGAGGTCCCGGTCCT AACCGCGGGGGCGCCTGCTTCGGGCTTCCGTCATAGTGACTTTGGGGAGT ACAAGACGGTGACCAGGATGGGGCACACGGACAACAAGCTAGCAGACGTC GCTGTCAGTCTGCTGGTGTATCTCAACTTTACCTCGACGCGGTTAGCCTT GCTCTACGCCGACACCGATGTCTGCTACTATCGGATGCAGGCTATCAAAC AGAAACTCGCGGTAAATCAGACTGCGGGAGTTGTGCTGGACAGAACTTAC TCCGATAACTCATTGTTCGGATTCCATTTAAAGGAGGTGGAAGAGAGAGC TAGAGGTGAGACTGAATATATGCATACATTGTTGTGTACGATTTTTTGGA GGCCAACACATAGCGGTAAACACATAACATTTCAACATCTTAGAAGTTTT GAGTGTTCTCATTGATATCACTTCCTGCCCCCCTGTTTATAATATATACA TGATAAATGTTTGTTCATTTTCGTGGAGTTGCTGTTGTTCACCTTGTAAT GTCCAGTTGCACATTGGTCAGGAAGTTTCCTCACTGTTTCAGTAGTTTTT ACAGGGAGGACCGGGGTTGCTAGCCCTTTCCCTTAAACGTGCTTGAGGTA ACCCTAGCTAACACGGGAGCCCCATTCTACGTCCCTTCCAAAAAACGGGT GCAGCCCCAACCGAGATGTGCTGTTCCTGGAGTTCCATCGGGGTCTCCCA GTTACCAACTGCATGTACAGGTGATTGGAACCAGGAGCTCAACTGTGAAG CTGCTACCAGTTGAGCTACAGGGACATCCCTATTTAACGTTTGAAGTTTT TTGGGGCGGACAAACGTCTGAAATGTCTTTCCATGTTTATTGTTGATTTA CTGTCATATGATTCTAAAAGACATTTTCTTGTGTCATTCCAAAATGTCTG AAATGCGAATGTGATTTTACATATACTTTATTGTGATCAAGCCTACAAGT TTAGTGACTTTAGTCTCTGTTGGCCTAACCTGGGTATGCATGTTGTATGG AGGTCACCTGACGTGTTATCGCATAGCGAGAGAGTCACTGGGTGAAACTT TTTAGCCCTCTTGACTTTCTTGTTTCTGTCAAAGAAACTTGAAAAAGCTT TTCTGTCAATCTTGCTTTAGCGTGCATCACAAATACTAGACATGTGTCTA TCAAACAATTCTGTTGGAGCCTAATGGCTTGACGATGTTATGAAAAGTCC AAACTGTTCTCCAACTAAACAAATCGGGCTCACAGGAATTTTCGACTGAA TCTGTCAGTCTTCTCCAGCTATATGATCCAAGCGCTCTGGACACGTGACT TGGCACACTTGTGACTCCAGCTATGGGTCAAATGCTGTTGGAAGTCGATA TCGCGCCCCGTCCCGGTTAA

Coding sequence (CDS) from alignment at Sc0000477:81498..85717+

>Blg00380.0 ID=Blg00380.0|Name=Blg00380.0|organism=Branchiostoma lanceolatum|type=CDS|length=1437bp|location=Sequence derived from alignment at Sc0000477:81498..85717+ (Branchiostoma lanceolatum)
ATGGCGTCCGGACTGTTGCTCTTTATTTCTGGTCTGTTTCTAAGGATCGG
AGGAGTATTTTCTGAGGAGTTTGTCATCCTGGTTATCCAACCTCAAAATG
TGAGTTACGCGTGGTCGTTAGACAAGATAACTTCGACAGTCGAATTGGCG
CTTGACACTCTAAGCGATACGGGCCTGTTGGGGCAAAATACCTTCAAGAT
CCATACCGAAGACTCAGAATGCAACAACTACAAAACCAAGGTCAAGTTGT
TGGACACGTACTATGTGGATTTGGTCAGGCCGAGCGTCGTGATCGGTCCG
ACTTGTCCCTTTGCGGTGACGGAGACGAGTCGGCTGGCTAGTCAGTGGTG
GGTTCCCGTTCTCACCGCCGGAGGCACCTCCGCAACACTCCGCTCCAACA
GTGACTACGAGAGTGAGTTCAAAATGCTGATCAGGATGGGTCAAACAGAC
GGCGAAATGGCCGACGCGGTAGCACGTTTCCTCTCGGATCCGACGGTAAA
CTTTACTCGACCGGAATATCGGCTAGCAATGGTGTACCACTCAGAGCCAA
CGGACGTCCAACAGAGACCATGTACCTTCCGTATGACCGCCATCAGGGAA
AGTCTGAAAAAGCTAAGCGAGACCACCGGTACCATTATCAATGTGGTAAA
GGATGAAGAATACACCAACAGTACTTACCAACAGAACACCAACTTCGTCG
ACATTTTAGATGACATCAAGAGCTTAGCAAGAGAATATCAGAACCGTAAA
GTGGCCGAGACCTTTACCGTCCTGATAGTTCAGCCGAGGCAGGCGACGTA
CCCCTGGCGAGCTCAGAGCCTTGCGCCGTACGTTCTTGACCAGATCGAGC
CAACCGTCGCGTTCGCGATCGAAGAGTTGCGAGAAAATGGAGTGTTGGGC
AACAGTAACACTTTCCACATCGACACCTTTGACTCGGCTTGCAGCTACTA
CATAGCTTTAACCGAGCTTTTAGACGCTTACTACCAAGACTCCTTGAAAC
CGAGCGTCATCATCGGGCCCACTTGTCTCTACGCGACGACTGAGGTAAGT
CGGCTGGCTAGTCATTGGGAGGTCCCGGTCCTAACCGCGGGGGCGCCTGC
TTCGGGCTTCCGTCATAGTGACTTTGGGGAGTACAAGACGGTGACCAGGA
TGGGGCACACGGACAACAAGCTAGCAGACGTCGCTGTCAGTCTGCTGGTG
TATCTCAACTTTACCTCGACGCGGTTAGCCTTGCTCTACGCCGACACCGA
TGTCTGCTACTATCGGATGCAGGCTATCAAACAGAAACTCGCGGTAAATC
AGACTGCGGGAGTTGTGCTGGACAGAACTTACTCCGATAACTCATTGTTC
GGATTCCATTTAAAGGAGGTGGAAGAGAGAGCTAGAGCTATGGGTCAAAT
GCTGTTGGAAGTCGATATCGCGCCCCGTCCCGGTTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00380.0Blg00380.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00380.0-exon-Sc0000477-1570713199:81498..82230Blg00380.0-exon-Sc0000477-1570713199:81498..82230Branchiostoma lanceolatumexon
Blg00380.0-exon-Sc0000477-1570713199:83130..83149Blg00380.0-exon-Sc0000477-1570713199:83130..83149Branchiostoma lanceolatumexon
Blg00380.0-exon-Sc0000477-1570713199:84019..84652Blg00380.0-exon-Sc0000477-1570713199:84019..84652Branchiostoma lanceolatumexon
Blg00380.0-exon-Sc0000477-1570713199:85668..85717Blg00380.0-exon-Sc0000477-1570713199:85668..85717Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000477genomeSc0000477:81498..85717 +
Properties
Property NameValue
GeneIDBlg00380