Blg00352.0 (mRNA) - B. lanceolatum

Overview
NameBlg00352.0
Unique NameBlg00352.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:563860..568314-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00352.0 ID=Blg00352.0|Name=Blg00352.0|organism=Branchiostoma lanceolatum|type=mRNA|length=4455bp|location=Sequence derived from alignment at Sc0000086:563860..568314- (Branchiostoma lanceolatum)
GGACTAGTCCAGATGTAATACACCGAAACTAGTTCTGGGGAAGTCCGTTA CGCATCATGCGTAGCGTTTTGCCACCATTCATGAACGCAGGGCGAAAATA AGCTATCGCTCCTGCTGTAGTTCGATCTTTCACCATAGAGAGCAGCTGGG AGTGACATGAGACATGGCGGAAAGGATCCCGCACAAGCCCGGAGGGGACC AGCTGGACAGGGCGTTATTGGAGGCCTTCGTGCCGCTACTGAGGGAGACC GTCATACCCAGCACCATCATCGCACACCTCATGGCACTCCTACCACAAGG TGATGTCATCGACTGTACACAACTGTCTGAAATTTAATACTGCCGTCTTT TATAAATCTTAAAGCAAAACCTATTTTCGGGTACAAAACGAAAGCATAAT GAAAAAAAGCGGAAGGTCCCTGCGCTTGTTTCCTCTTTATGACACCCCTG CTTTAGCTGTGCGACACCCCTGCTAATTCCCGAGTGGCCAGCTTTTTCAG AAGCTTTTTCTTTTGTTCCACCATACTACTTTTGACAAGGTATCTAGTTG TTGCTACTTGTGTACAATCTGTGAACTAGAGACTGACATACAAATCAACA TTTGAACCAGGAAGTTGGCAGCTACTTTCATGGTAAAACAGGAAATGATA CCGTGTTTTCATAGCTAAGAAGTGTGTTTCATTTTCTATTCATGTTTATA TTTCTGATAAAACTAGATTTGAAACACGAATTTTTAAAGATCATTTTGTT GAGTTACATAGGGAATACAAAGCACATCGCACGCTACCCCATCGTCTTGG TATCAAGACCAAAAATACATTTGTGTGATTGTTTTACTTATGGTCATTGT TTTGGATAATGACGCCATTTCGTCTGTCATAGACGTCACATAAATGATTG CTCCAGAGCAGAGTTTGTTGGCACTGTGGCAATGTATTTGTCGCGAATTT GCAGATGAAGTCAACAAAATCCTCGCGGATGAGAGAAGTGGCGGACCTGC GGTGGCCATGCAGCGGCTGTTGGCGGTACTGCAGGAGTGTAGACAGCCCG GCTGGTTTCAGGCTCTTCTGGACGCCCTTGAAAATTCACGTGGGAATGAG AATTTCAACGTATCTTTGTATTATCGCACTATTGCAAGAATTTTTAAAGC ATAATGGGGAATTCATGAAAAATACGCATACTTACACATACACACGCACA CACACGCGCACACACACACATAAGCTGAACACACACAAACACATGCATGC ACATGTATTAGACAATTTCCTCACAAAGTCCTACTTTGTATAATTTGTAT TTAATTGTACACGTATTATCTTTATAGAAACCAATACCTCCGCTGGCAAA GGTAGATGCTTCATGCCACGCAACGCACCGCTACTTAACACAAATGTTTT TTCATCGTTTATTTGTACCCCAGATTTCACTTGTGTACGAAATGCTAGTC TCCAACCAGACCCAATAGATTGCAAAGACCGTATCCAACTGGAAGAAGGA GCTTGTAATGCAATCTAAGGGTTGCGAAACGTACTTCCTCTGCCAGTTTG ATACGGTCTTTATGCAACCTGGAGATTACGAAATGCACTGATACAGGGTA TGAGCACATCCGGGACATCATCAAGGGACGACAGACTGGCTGCGACATGA CGTTTTTCAGGCGCCTCCTAGCGGTTTGCGCGCCTAACCTGCAGCGGATC GTGGCGGTGGACATGCTGCCGCATCTCTGTTGTCTTACTGACGACGATAA AGTGGGTCTTCATACACAAACTAGCACTACATCTAGAGTTTCGAGATCAT AAGGAGTAGAGACTTTGTAATGATAAACGCCAATCTGTAGAGGGTGAACC TGTTTTAATCGTCGATTCTTAGAATTAGGATGTAACGTTACCCTTTTCCA ACAGAATGTTCAACACAGTTTTTAAAACTTTGCTTCAAATTCTTTTGTGT CACAAAGTACTTTTGAACTATGTACTATGTTACCTACCAACACAGGTGAA CTTACATCCTAAGATATTGTCAAGTAATCTCCCTGATTTCTCACGTAACC TGTAAACATGTGTAAACAGTGCGTACTCTACTGAAAATCATTTTGTTCCA TGCTAGCGTTTTATTTGGATATATATACATTTCATTCACCCCGGCCTCCT CCTGCAGGTTCTGGTTCAAAACGAGGCTCGTAACCATGGTAACTCCCGCG CTGTGGTGACCCTGCTGGACCGCCTGTCCCGCCGTGAACCCGGCTGGTTC CAACAGTTTCTCTCCGGACTCAGGCAGACCGGCTTTGGCGACATCGCAGA ACAACTAGACGATCTGAGTTCAGGTAAGTCTGAATTTCTTCTCATGAGTT TGACTTTTGCCCAGAAATATTTTAGTCATTCGAGGTACGCATAGCACACT GCACACGTACAATGAGGCTGTTACAATACAACACATTTTTATTGGAAATA TTGAATTATACAAAACACACAGACACACTCTGTCAATGACATTCTCTTGC TCTCGCTCTCACGCACTCCAAAAATGTTTTACTGTTTTCGTCACATTGAT ACTCTGGACTGGAGTTTAATATGTCTGTACATTGGATAAAGTAATGCAAA GCGCTTTATATATACAGCATCCTTTAAAGGTAAGTTAAATGGATAATAAA CTGTACTGTATTTAAGTGTTACGTTCTTCTCCCAGTTCCAGAAGCAGTTT CATCTGTAGAAACATCGAGATCGTTTGCAGAAGTTAGCGGGACCGTTACG GGCGGAGCGGAACTAACGGATGCCGAAGGCGGCTACCAGTCGTCACCCGT TCGCCCTGTTTCCTTGGATTTACGACGGGAGACTGAGGAAAACACCACCC ACCGACGACAAGGTGTTCAAATCTATAGCTAAGATTCACCAGTCGATACC GTTAGATTCGACTTGAGATGAAATTGAAAGCAGACTTTTTCCTTTAAAGT TCCTTTATTCAGATACATCAACGTACAGAAAACGACATACATGGATATTA ACAAGGAACATGACAAACAAATGTACATATGCTGCCAAAATTAGTACAGC AGTTTGCACATACAAAGCAGAAGTTATTGTCTTGCTGATAAGATAGACAT ATCATAACAATGGCGTAATTTTGAAGATGTCTTTGATTATACTGTCCAAT ATATGGCACTTTAAAGACATTTATCACTGGTTATGAGATCTAGAAAAGAA GTACAAAAGAAAATTCTGGTTTAAAGCTTAAAATATTGACGTTATAAGGA CTCTGTTTAATGTATCTTCATTTGGCAACAGTACCCGTACACGAGCCAGA ACCGAGTTCCCCTAGTTCCCCGGAGGACGCTGCTCCATGGAAAGCGGCGC TGAGTGACCTGGCGTCACAGCTCTTCGGCCAGGTGGGACTGGGAGGCACT GTCGGGCAGGTGATGGCATCGAATAGCACACAATATCTAGTTCATGAGTT AAAACAACATATTTCTGATGTTATGGTTGAACATGTCATATGTGTTGTAA AAATGTTCTTCTTATATTTAGAGTATGAATCGAGTGCCGTGATTCTAAAT CTTGCCGCACATTACATTTATTACCAAAACACACAAACTATGACCATTAA AGACTCAATTTTATTCTTCTTTTGTGACCATTTAGACGTGAAAATTCCTA TTTGCATTCATGCTTTACAAATGAAATCAGCAACTGCAAGCACCATACAA ATCCTTGCCATCCTTGGCGAGTAGTACAGCCTCCTGGCTCCCGGGAGTCG AACCTGCGCCGAACCCGGGCCGCCAGTCCATAAACCAAACGCACTTACCT CTAGGCTAAAAGGTTCGGACCAGATAGCCTGGTCAGTTTACGTTGGTGGC GTTTGAACTCCACTGTTACATTACTGTTGTCCAACATAGCTCTGTTGTGA GTTCTGTACTAATCATGCACGTTAGATATCACTTCCACTGTACATGTACT AACTTATATGAAGGTTACATCGACATCATCTTCTTCCAATAATGCAGGTT TGTGTGTTTGGCCGTACCATTCACTACAGTACAAGAGGGGCGTTCAGCCG TGGCTTGAAATGGAAGTTCTATGGCGAAGCACGGGATCAAGACAGCGGCC GTTCGTTTCAAGATCCGGAAGGATGGAAGAACCAATCCACAGCAATAAGG AGGGCAGCGGGAGGCGTCTTGAAGATTCTGATGGCTGAAGGAATAATAGA ATACAGAGAGATTAACGAGGAAGACTTAGACTGACAAGCTTTTTTGATTC ATCACTGTTGAACGTTTAGAAAGGGCTATCGAAAAGGTTCGATGAGAAAA TCTTGAAAATTCAATACATCGTTGATATTTGTGTACATGTACTCCACTTT TTTCTGTAGTAGATTTAGATAACGCAAAATGGCTAAGCTTAAGATGTAAA CCTATAACGTGACCGGCCCCGAGTTCGCCCCTTTTTTGTAATAAATAATA GTTTT

Coding sequence (CDS) from alignment at Sc0000086:563860..568314-

>Blg00352.0 ID=Blg00352.0|Name=Blg00352.0|organism=Branchiostoma lanceolatum|type=CDS|length=1056bp|location=Sequence derived from alignment at Sc0000086:563860..568314- (Branchiostoma lanceolatum)
ATGGCGGAAAGGATCCCGCACAAGCCCGGAGGGGACCAGCTGGACAGGGC
GTTATTGGAGGCCTTCGTGCCGCTACTGAGGGAGACCGTCATACCCAGCA
CCATCATCGCACACCTCATGGCACTCCTACCACAAGATGAAGTCAACAAA
ATCCTCGCGGATGAGAGAAGTGGCGGACCTGCGGTGGCCATGCAGCGGCT
GTTGGCGGTACTGCAGGAGTGTAGACAGCCCGGCTGGTTTCAGGCTCTTC
TGGACGCCCTTGAAAATTCACGGTATGAGCACATCCGGGACATCATCAAG
GGACGACAGACTGGCTGCGACATGACGTTTTTCAGGCGCCTCCTAGCGGT
TTGCGCGCCTAACCTGCAGCGGATCGTGGCGGTGGACATGCTGCCGCATC
TCTGTTGTCTTACTGACGACGATAAAGTTCTGGTTCAAAACGAGGCTCGT
AACCATGGTAACTCCCGCGCTGTGGTGACCCTGCTGGACCGCCTGTCCCG
CCGTGAACCCGGCTGGTTCCAACAGTTTCTCTCCGGACTCAGGCAGACCG
GCTTTGGCGACATCGCAGAACAACTAGACGATCTGAGTTCAGTTCCAGAA
GCAGTTTCATCTGTAGAAACATCGAGATCGTTTGCAGAAGTTAGCGGGAC
CGTTACGGGCGGAGCGGAACTAACGGATGCCGAAGGCGGCTACCAGTCGT
CACCCGTTCGCCCTGTTTCCTTGGATTTACGACGGGAGACTGAGGAAAAC
ACCACCCACCGACGACAAGTACCCGTACACGAGCCAGAACCGAGTTCCCC
TAGTTCCCCGGAGGACGCTGCTCCATGGAAAGCGGCGCTGAGTGACCTGG
CGTCACAGCTCTTCGGCCAGGTGGGACTGGGAGGCACTGTCGGGCAGTAC
AAGAGGGGCGTTCAGCCGTGGCTTGAAATGGAAGTTCTATGGCGAAGCAC
GGGATCAAGACAGCGGCCGTTCGTTTCAAGATCCGGAAGGATGGAAGAAC
CAATCCACAGCAATAAGGAGGGCAGCGGGAGGCGTCTTGAAGATTCTGAT
GGCTGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00352.0-exon-Sc0000086-1570713199:568016..568314Blg00352.0-exon-Sc0000086-1570713199:568016..568314Branchiostoma lanceolatumexon
Blg00352.0-exon-Sc0000086-1570713199:567226..567360Blg00352.0-exon-Sc0000086-1570713199:567226..567360Branchiostoma lanceolatumexon
Blg00352.0-exon-Sc0000086-1570713199:566564..566718Blg00352.0-exon-Sc0000086-1570713199:566564..566718Branchiostoma lanceolatumexon
Blg00352.0-exon-Sc0000086-1570713199:565992..566157Blg00352.0-exon-Sc0000086-1570713199:565992..566157Branchiostoma lanceolatumexon
Blg00352.0-exon-Sc0000086-1570713199:565453..565629Blg00352.0-exon-Sc0000086-1570713199:565453..565629Branchiostoma lanceolatumexon
Blg00352.0-exon-Sc0000086-1570713199:564906..565033Blg00352.0-exon-Sc0000086-1570713199:564906..565033Branchiostoma lanceolatumexon
Blg00352.0-exon-Sc0000086-1570713199:563860..564285Blg00352.0-exon-Sc0000086-1570713199:563860..564285Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00352.0Blg00352.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:563860..568314 -
Properties
Property NameValue
GeneIDBlg00352