Blg00338.3 (mRNA) - B. lanceolatum

Overview
NameBlg00338.3
Unique NameBlg00338.3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:231963..234131+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00338.3 ID=Blg00338.3|Name=Blg00338.3|organism=Branchiostoma lanceolatum|type=mRNA|length=2169bp|location=Sequence derived from alignment at Sc0000086:231963..234131+ (Branchiostoma lanceolatum)
GTGTACACACGCGTAAAGCTGACACCATCGAAAACTTCCCCATCAGTCAT
AACGACATTTTGCGGTGACGGAATGCGGAAGTCTGTGACATTCGGAAATG
TCACCAAAACTAGGCTTAAGTTCCTCCTGTTTCTGTTCCGCATTCTGAGT
CGATCAACAAGCCGATCTAGCTCACATAACCCGTCTGGAGGCATAACCTG
TAAGGTAAGAAAATATCTCATTCCAATATTTCTTTTCATTTCATTTTCTC
TACAGTCTTAATCTTTGGGTCTCCAATGACACAAGACAAAATGAATATGG
CCTTAAAAAGCAAGCAGCTTGTAACATTTCTTTACTAAACGTATGTTTTC
TGAACTGACGGGTACAGTTGTTTTGTTTGAGGTCGTAAAAGCAATGTTGT
GTTCGCTTCTGTGATGTTATCTTAGCTCATCAAGAGTTAAGTAAAAAATA
TCCTTAACGCTAGTTGTACACCATACAGTCGTGTCGTTAGCGATAGCCTT
ATCTGTATCATATATTCTAAACGATGGTAATACCGATCAATGGGAATGTT
GGTATGAGATTATACTGATTGGAAACAGCTGGTCATTGTCAAGATTCCAA
GGTAGGAAGTCATTAATAACTGCAAGGTACAAAGTCACAGTAATAATTCA
GGTATCGCACTACGAAGATAAACGTAATTAAAGGTGACGAAGTTATGATA
ACATTTAGGGCAAACATATTCATATTTGTGCTTAACAGCAACTATTAGTA
TCGCAAACGTATTAATTATAGACAATGTGACATTTCTACCTTTTGAAAGC
GGAACTTCCTCTCAGCTGAAGGTTACCCATCACCATGGCAACGTACGAGA
AACGGTTGTCCCACCTGGCTGTCATTCTCTCCGTGGTAACCATGGTGATA
CCTACGTCAGAGGGGAAGTTGGGCCTGAAAGATGCGCTTCCGTCTGTTCT
GAACAACGGCTTTACCTGGCAAAATTGTGGTAGGTGGAACTGATAAAACT
GCCGTAAATGCATTCACTAGCATGATACTGAATCTTAGTTAGTCTTGCAC
GGTAATGATAGATTCTTTGAATTTTCATTGGCTTTTAGAGACAATCTCAG
ATCATCATTTGTCAAAAATTGTATCACATCTCATGGATACAGTCGTGGAT
ACCATCTGGTTATCTATGATATGACGTTTTACAATACTAATAGTAAGTAC
CACAATGCTAATAGTAAGTACCACAAATATCATTATCATTACCCGTGGCA
CGAAAATTGAGTTAATCTGTATTCCTAAAAAAAGCCATAAAAACACCTTA
CCACTTTTGAATTGATTCAAAGTCATTGCCACCTTTCTGTCTTCAGGCGA
CCCTGTCACGCAAAACTTCACTGTCACTGTGCTACCGAACCCACCAGTCA
GAGGAGAAAATTTCCAAGTCGGCATTACGTTTGTACCAGGTAAGATTTGC
CTCTATGATAAGTTTATCTGCACTTTTAAAAAGTGCTTTAAATCCCACCG
CTGCCACAAAGTCTATGAGAGGGTAGCATGACACTGACTGTTGGAGGAGG
AGAAGACCATCCATGGCCATTGTGATGGGGCAGGGTGTACAGAATGAGTA
TTAAACGACGGTGTAGTACTAGTTGCATTTAACAGCATCCGACAGGGGGC
ACTCTTGGCTAGCGCTAAAAAGAAACGTGTCATATATTTGACTTATATGT
ACAGCGATAACCCATCGGTAATCGGCGGTATTCTTCCCGTTAGTAATTTA
GATTTTGGAACGGACGTACAGGATATGCATTAGTGTGTGTGATCTATATC
TTTACCCTGTGGGTATATTTGTGCGCTTTTGACTACAGAAATTTTTGTGA
CTTTGATACCGTAGATGCTGATCTCACGATCGGGAGAGTTGACGTGGACT
TCTGGCACAACTATCGCCCAGCGTTCTCCGTTCCCTACCCTATCTGTAAG
AAAGGCACCAAGGAAGAACACTGTCCGATGAAGAAAGGAGGTAACAACAC
TGTCTGTTGTTGTATAAACGTTAACGTTAACTGGAAGTGTAACGTTACAG
GTGTTGCTAATCATTTTCAACATGTGTTATGTCTGGTTTCTTACGCGTAA
CGTTTAGATGATATTTGCATGACTGTGTTCCGTTTATTGCTAGATTCAGT
GGTAAACGTTTGTCCTTCT

Coding sequence (CDS) from alignment at Sc0000086:231963..234131+

>Blg00338.3 ID=Blg00338.3|Name=Blg00338.3|organism=Branchiostoma lanceolatum|type=CDS|length=474bp|location=Sequence derived from alignment at Sc0000086:231963..234131+ (Branchiostoma lanceolatum)
ATGGCAACGTACGAGAAACGGTTGTCCCACCTGGCTGTCATTCTCTCCGT
GGTAACCATGGTGATACCTACGTCAGAGGGGAAGTTGGGCCTGAAAGATG
CGCTTCCGTCTGTTCTGAACAACGGCTTTACCTGGCAAAATTGTGGCGAC
CCTGTCACGCAAAACTTCACTGTCACTGTGCTACCGAACCCACCAGTCAG
AGGAGAAAATTTCCAAGTCGGCATTACGTTTGTACCAGATGCTGATCTCA
CGATCGGGAGAGTTGACGTGGACTTCTGGCACAACTATCGCCCAGCGTTC
TCCGTTCCCTACCCTATCTGTAAGAAAGGCACCAAGGAAGAACACTGTCC
GATGAAGAAAGGAGGTAACAACACTGTCTGTTGTTGTATAAACGTTAACG
TTAACTGGAAGTGTAACGTTACAGGTGTTGCTAATCATTTTCAACATGTG
TTATGTCTGGTTTCTTACGCGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00338.3Blg00338.3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00338.3-exon-Sc0000086-1570713199:231963..232166Blg00338.3-exon-Sc0000086-1570713199:231963..232166Branchiostoma lanceolatumexon
Blg00338.3-exon-Sc0000086-1570713199:232762..232941Blg00338.3-exon-Sc0000086-1570713199:232762..232941Branchiostoma lanceolatumexon
Blg00338.3-exon-Sc0000086-1570713199:233309..233401Blg00338.3-exon-Sc0000086-1570713199:233309..233401Branchiostoma lanceolatumexon
Blg00338.3-exon-Sc0000086-1570713199:233827..234131Blg00338.3-exon-Sc0000086-1570713199:233827..234131Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:231963..234131 +
Properties
Property NameValue
GeneIDBlg00338