Blg00303.0 (mRNA) - B. lanceolatum

Overview
NameBlg00303.0
Unique NameBlg00303.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:10927..18145+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00303.0 ID=Blg00303.0|Name=Blg00303.0|organism=Branchiostoma lanceolatum|type=mRNA|length=7219bp|location=Sequence derived from alignment at Sc0000086:10927..18145+ (Branchiostoma lanceolatum)
GTGATGGAGGGGAATTTTCTGCGCGTGCAGTGGAAATGGCATGACTCATT AACTGTACATGTGCAATAATATACTCCAGTGGCAGTGCACGGCGTTCTAT CCGAATTCATCGACAGCAAGTATGGAGATTGCTCTTTGTTTGAGAGTTTT CTGCATCCTAGGATACTTCTCCATAACCCCAGGTAAGATAATGTGACTGT GGGTTAGTTTGGGTTGTGTTACGCTGACTAACAGACAGCCGCGGGCTACC GGCTGTCAATGCGGGGGAGTACAATGTAATAGCTTGATAGCCTGTTGAAC ACCGTGCACTGTGTCAATTAAAACCCTATAATAATAACCCATTATGATTA TAACTAATTATGATTAAGATTAACCATAAGTCATTGTTGTCGTCAAATAA ATTATCATGTGTATAATTTCGCCGTGTGCCGAGTCTATCCAAAATTAAAG GTATAACTGCTATTTCTGAGGAGGGGGGGGGTGTAACCACGTCATGAGCT CGTGACTGTGACTGGTTTTCAACGCGTGTGGCCAATCCACGTATTACTAC TCTCCAAGCAGAGGTAAGGTCCGGGGTATTTTCGACGTATTTTCGCGGTA TTTTATACGTCTTTCTACTTGAATTGTGCGTTTTTTGCTGGGGGAGGAAG ACCCAACAAAAAACCGCACTTGAAGTATAAAGACGTATAAAATACCGCGA AAATACGTCGAAAATACCCCGGACCTTACCTCTGCTTGGAGAGTACTGCG TATTACGCTCACTGAAATAAGACAACGTTGTGGGTCCTTCATCACTTCCA AAGTCCGGTATAATGATTGTGTCGTATGATGGCCACGGACAGTGTGTGTG TGTGTGGGTGGGGTCACGGGGTGTTGGGTTGGGTTGTTTTGTGCGGGCTT AGTATTAAAATCAGCCAATTTTTCTATTGTTTTATTGGTAAAGAATCTTG TTGTATAGAATAAAACTTTCAAGGGAAATTCATCACGAAGCCATGTATTT CTTCTTACAGCCTTAGAAATTCCTGGGCATCCTACCAGTGCCACCGACGA CTCCAACTTACAAGCAATCACAGCCGAACCAAAGACGTACGCCTACGAGG GCGACACCGCGGAGCTCATCTTCTACATGACCGTCCAATCCGATCTTCCA TCAGATGGACTTAACGAAATGACAGTCTGGTCGTCTGCCGACAGACAGAA CTATTGTGAGATGTACCAGGGTGAAACAAAATGCCACGGCGACCGGTTCA GCAATGGGGCTGAGATGTGGGAGACCTGGTTTCCTGAATTGGACGGAGGG CACACGAGGCACGGGAGGATCGTGTTGCTACTGAGAAACGTCTCCCTCAG TGATACAGGCCGGTACGAGGGGGAGATAAAGACGACCGACGACATTAACA ACGTCAACACCATGCTGGTTGTGAAAGGTAAGAGTGTAGTATTACAATCC ACGTTTACACATTGCATTATCTAGGCTATTGAGATGAGGATGTTCCTGTC AACAAGAATTGTTTGCACCATTCACAGGATGTTCCTGTCAATAAGAATGG CACAATTGTGTTTCTGTTGAATATTTTGTGGACTTTATTGACAGGAACAT TCTGTCAATAGCCATATCGTTATGAGTTTGGTTTCTGCAGCATTCTACGT ACCCGTCTCTTAGCGTCACAGAAACAATATAATGTACAATCTGTTACACA ATTTTAATTAATTTGAGACAATAGGCATGCTGAGCATTAAACAATGTTAT CCATATGTTATTCCTTTATTCAGAGGATTCTGAGAGACCGAGGGACGAAG ACACAGCAAAGCAAGGTGAATATGTTATTTCATGTGTAAATTTCTGACAC AACTATTTTTTATCAATGAATCATTTCGAAGAGAATTTTCACATGTGTCG TTTCTATAATCTAAATACTCCGTCAACCCGTCTTCGCATTGCATAGAATA TGGCACAAAATTACAACAAAAAGAAATCGTCATTTGATGATTAATCTATC TACTATTATTTACGACAGGTTGGACCACTATGTGGTGGCAGTGGTTTGGA GTATACGGTGCAGGGGTCCTGTCAGGCGTGATTTTCGCTTTCATCGGCGT GAAGGTTGCACGCCACCGCAAAAATAGCCAGAAGTAAGTTCACTCTACAT AACGTAGATATTTGGCGCAATAAAAGTTGTCCTCTATCATGGAAAGAGAA GCAACCTACTTCAGAAATACCTTTGACAACACTGTAGAATTGACCTAACG TGGAATAATGCACAGTACATTGTAGAGTAGATTAGTTTTCACATAATTCA CAGTCACGTATTCTAATACAATTGTTGAGCACCATGATTTTTAATTACCT CCGGGAAGGAGGGTCACCTCCTGAAGGAGTATTGTGGTTGTTCGCACGTT CGCAGCTACCACTCATGATCCCTTTGCTGCATTGGTATGTAACTTGGCAT ATGTCGTCTGCTAGTATACGCGAGATAATCAAATAATGAAAGCTTTCTTT TTTACACCGTGTAACAACTTTTTGGGCTGGGTCTGGCTGGGTCTTTGCAT CTTTAAATCAATATCCTTTTGATGGATTTGTTTGAAATTGGATATGTCAG TAGTGAAAAGGGCATCGAATGACCGCAAACACCATACTTACTTCACGGAG GGTTGTGTTCTACGGACTCTTGTTGTTGTCGATGTTGATTGGGTTAACCT CGTGTAATGGCGGCTGTAGCACCGGCTTTGGTCCCTCACCGCCCTGTCGC TAAACTCATGTTCCTTTGTATCAATTTCCAGGCCATCGTCCGTACCTGTC TGATGCCAACTACTATGATGGCTCTGATGTTTATACGGAAACACACGAGC TCCGACAGCAATAAAGGATGGAAGGGTCTCATCTTACTACATAGTAATAA TAATATTGTATTTACTGCTTGTACAATATTACTGTATTGTGAAATTTAAA AATAATCAAGTACTTTTACTACATTAGTACTGCTATGCAAAAGTGTGATA ATGTCTTCAGGGAATTCGGACACACTTTTGAACAATACTATAAGTCTTGT CGAATGTAACAATAAAATGTATTTTGGTTTCAGACTATATTCTTAGAGCA ATAGCCGCACGTAGTGCATATAACATGGTATAATTTAGGGTAGACGACAG AGTACTAATGGTTGGATCTATTTCGGTATTATTGTATATTGTATATATTT TCGGCTTCAAAGAACGTTACCCAGCAATAGAGCCCAAACCTCAACTGTTT TTTATTTAATGACTACAGAGCTGTCTTTCATACTAGGTGAGGTACAACAT ATGTACATTCTACAGCACGTAGTAAAAATTCCTGATGGACGAAAAGCGTT AGCTTGTTAGTTACTATACCGTGTAAGTGAATGATAAATACAAGAAAGAC TGGGAATTGTGTACCTTTATCATTTTTATCATTATGTATCAAACTGAATT CCGAAGCTATTTTAAATGTTTTCTAGTCATACATTCGTAAGACCCACCCG GAAGTAAGTTTTGTATGTGGTTGAAATTCCCCTCGCGAGTCGTGCTGTCA GCTGATTGGCCAGATTTGACCTCTACATGTCCCCGAGACTCTGCTGACCC CGTATTTCTATCAGTTACTCATGGGGAAACCCGATTACGCCAGAGGCTAT TCGGGAGTAGCAAGGGCATTACATAATGTCCGGGGGAGTAGCATATGTAC ACATAATCAAACAACGCTTTACATTATAATTACAAAAATGTTGAATCAAG CAAAAAGATTACCTCAGAAATGGACCTTATTTTCTCACAAAAGTATGTGT GTTTATTGTGCTTCGCGGATACATAACGTTGCATGTGGCGAAATCATATG TGTCTTTTCTCCCAGCTATAGTCAAAAAGTTCCTCCAAGACTACTAGAAT GTCGCCTGCTGCCTAAATTACGCATGATCTGACAGAATGGTAAAGGAATT CATGGTAAAGCAACTTTGTAATAGGTCAGCACCCAGACGAAAGTGACGCT GCATTCGTACCGTATGGCCTCTGGACGAGTAACCTACTAGGGGGAATGAC CCGAGTAAAAGGGGAATCACCTTGACAAGGGGGAAATTGTGTGACGTCAT TTTACAACCTTTGTCAAGAGATAGTTAAATAGCAAGCTAATAGATCGAGA CATTCACTCCATGTCCATTCGCCAGTTTCTTACATTGATATTGATACGCA GTGGAACTTTGCATAAATATGACGTAACGGGTTTCCTTGTGCAATAGGAA TTTCCATGGCAACCATTCACCATGATACCTCCTCCATGTTTTGGAACTCC AAAATTAAACTGATGCGAGCGTGCGAATAATAAAAAGTTTGCCCCCTAAA AAATTGCCCTCAGGATGAAATCTGAGGAATCAGGGAGGTTGAACAAATGA CTAAGCACAGAGTAAGGTATACCGAAAACAGTAACAGTACATGTTTCGCG TTTCTCGTGTAAAATGGGCTCTGCTTCATGACAAAATCCACTAGTCAGGA ATGCAAATGCTAACACGTTTTTAATGATCAGATATTTTGCATAGTACAAA AAATGATTACATACACATGATCTTATTAACCACATATAACCAAACACTCA TATATATACAAGTATTGACCGATATATACATATAAAGTCACTGCTACAGT TAGACTGAATTGCGAATTCTAACACCAAAGCAATATATTGTAGATTCTAA ATAAATTGCTCAACATGTTGTAAAAATATGTATTTTCATTAATTGTACTG GTAAATTGAAATACAGCCCATATAGCTTCTTGATACTTCTGTTATTTCCA ACATAAAAAAATTGACAAGATACAATTGGATTATCAATCGCTGAATAATA TAATCAACTATGTACAATCACTAAACACACTTAATTAAATACTTACTATA CGAATATAACACTGTATCATGTCAACAGGACATGTGAAAAATGGGAATTC AGCTTTTTTTCATGAATAAAATGTTATTTCAGAAATGTCTCATCTGAAAT AGGTTGATATGCACACAAAGGAAAAGGATTTTATAAGATACCTCACAGTG ACATGCACCGTAGGTGGATGTCAAAGCTCAAAGCCCCTGCTAATTCTTCA TCTAACTGTTACATGTCCTTGACATTTACCCACGATGCGTCTCACTGCAC AGGCGCACTTTAAACAGTGAACGTTATATTCATTACACATTTCCATCAGC TATGGGACTACACGAAAAACGTGTGTAACACAGCCAATACAGGACCTGAA ACAAGACAGATGCCCCTGACCCCCCAAGTACTGCCCCCAGGGCAGCGTCA TCGTACCACGACTCAGTCTCCTTTACCAAATGCCACACTGATACCATCAC TATGTTAGTTGCTAACATCATCGTACCACGACTCAGTCTCCTTTACCAAA TGCCACACTGATACCATCACTATGTTAGTTGCTAACATCAGTGCACTGTT AACAAGAGTTCTACGACCTCATACCTTCGCGAAATGATTTTGACCTTTAT GACTGACGTATTAGGAGTGTTTTTCATCAATCAAAAATCATACCAGTTGA TCCTCCTCACCCAAATAACATAAGTTGTCCAAACCTCCTTGTTATGATTA TGAGCTTAACAAAGAAGGTTATGCTAACATTTTTCATCAATAATGCAAAT AAGCTCCTTATTAGCATAATTTGATTCAATGGTGTTCACATTCACACAAC TTCTAAATGCAACAAGTATGAAATTGCCGTTATTTACTAGTATGGAATGA TAGTAGTTTCTCATGAATTATGCAAATTAGGCCTACATTTGCATAATTTC TATCTATTGACATTCCTCTCTTCCTCAGTTACAAATGTCACATATTTGAA TAGTCATATCATGGAACACAGCAGGTTTTTAAAATTGCCTCATTAATTAT AATCTGATTTGCATAATTATCATCCAATCATACAAAGCATCACATAAGCT ATCTACATACCAAAAATCATGACCATCCATCAAGCCCATCTCGAGTTATA TTATTTTCTCATTAATTATGTAAATGAGGTTCTCATTTGCATAGCTGATA TCTATTAATATTTCTCTCTTCCTCAGTTACATATGTCACATGTTTGCGAG TCCTATCATGGAAATTGATGAATGTATAAACTTTCCTCATTAATTATGCA AATTAGTTACTGATTTGCATAATAAGTATCCAATCATGTACATCATCGCT CAAGCTATGTACATGCAAAAAATCATGACCTTCCATCAAGCCCTTCTTGA GTTATTCCCTTTCAAAGTCTGAAGCAAAACCTACCCCTGCAGTTCCAAAA AAGTTGCTAGGGGGCCCAAACCTATACCACTTACTCTCTGCCCAACGAGC TATCTACCACTCAAAAATCAGTTCCATAGCATGTCCACAACACGAGATAT CATAACAGGAAGTTCCGCTGCAGTACCGTAACAAGCCGATAGGGGGCCCA AAATCTAATCATTTTCAGGTTTCATCGAGACCTACCAACATACCAAATAC CAAGACAATCCTTCCAAGAATTCTCGACTTATCGTGTTCACTAACAGACA CACAGACATGCTCGGTATTCCCATGCTGTGGCACTGCATTAATGACTGTT CTTACTCATATAAGGCCGTGTATATCCAACTTTGGTCAAAATTTGTATGT TTCAGTCTTTTAATTGGTGTAAGGAGATATCTTTGTGGTTTGGTTTCACA TGCTCCGAGTGGACTCTTCCAGGCTGGGAGTAGGTCAAAGTTGACGATTG TTTTCGTCTGTCAGCTGTTACGAGAGAACGAGCTGGTCAACTGTCTATTT TCTTTGCATGATTCTAAAGTAGACAGATGTGGCTTTCTGGTGCATAAGAA TTTTGGGGGCTTGCAATTAAGGTGAATCCTTTTCTGAGCCCTTGTTTTAG TGCTTTAAAGCATTACTGCCTATATGGGCAAGTCTATCTCTTGTATCTGC CCTACAGCTGGCTGATAGCCAATTTGTCCCTGGCAGNTTATGCAAAACAC TTTGCCCAAAATCTAATCATCTTGAGATTTGACACATACACACCGACACA CCAACTACGACAACAAACCATCCAGGCGTTCTCGACTTATTCTGTTCACT AACAGACACACAGACAAGCACCGTCGCATAACCTTCTCGACGAAACCATT CGTCGCGAAGGTAACAATGGGCTGTACTGGGTACAGCGTCCTGGACCCAA ACGTGACCCAGGTAAACAC

Coding sequence (CDS) from alignment at Sc0000086:10927..18145+

>Blg00303.0 ID=Blg00303.0|Name=Blg00303.0|organism=Branchiostoma lanceolatum|type=CDS|length=720bp|location=Sequence derived from alignment at Sc0000086:10927..18145+ (Branchiostoma lanceolatum)
ATGTGCAATAATATACTCCAGTGGCAGTGCACGGCGTTCTATCCGAATTC
ATCGACAGCAAGTATGGAGATTGCTCTTTGTTTGAGAGTTTTCTGCATCC
TAGGATACTTCTCCATAACCCCAGCCTTAGAAATTCCTGGGCATCCTACC
AGTGCCACCGACGACTCCAACTTACAAGCAATCACAGCCGAACCAAAGAC
GTACGCCTACGAGGGCGACACCGCGGAGCTCATCTTCTACATGACCGTCC
AATCCGATCTTCCATCAGATGGACTTAACGAAATGACAGTCTGGTCGTCT
GCCGACAGACAGAACTATTGTGAGATGTACCAGGGTGAAACAAAATGCCA
CGGCGACCGGTTCAGCAATGGGGCTGAGATGTGGGAGACCTGGTTTCCTG
AATTGGACGGAGGGCACACGAGGCACGGGAGGATCGTGTTGCTACTGAGA
AACGTCTCCCTCAGTGATACAGGCCGGTACGAGGGGGAGATAAAGACGAC
CGACGACATTAACAACGTCAACACCATGCTGGTTGTGAAAGAGGATTCTG
AGAGACCGAGGGACGAAGACACAGCAAAGCAAGGTTGGACCACTATGTGG
TGGCAGTGGTTTGGAGTATACGGTGCAGGGGTCCTGTCAGGCGTGATTTT
CGCTTTCATCGGCGTGAAGGTTGCACGCCACCGCAAAAATAGCCAGAAGC
CATCGTCCGTACCTGTCTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00303.0Blg00303.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00303.0-exon-Sc0000086-1570713199:10927..11108Blg00303.0-exon-Sc0000086-1570713199:10927..11108Branchiostoma lanceolatumexon
Blg00303.0-exon-Sc0000086-1570713199:11937..12353Blg00303.0-exon-Sc0000086-1570713199:11937..12353Branchiostoma lanceolatumexon
Blg00303.0-exon-Sc0000086-1570713199:12700..12741Blg00303.0-exon-Sc0000086-1570713199:12700..12741Branchiostoma lanceolatumexon
Blg00303.0-exon-Sc0000086-1570713199:12945..13059Blg00303.0-exon-Sc0000086-1570713199:12945..13059Branchiostoma lanceolatumexon
Blg00303.0-exon-Sc0000086-1570713199:13708..16241Blg00303.0-exon-Sc0000086-1570713199:13708..16241Branchiostoma lanceolatumexon
Blg00303.0-exon-Sc0000086-1570713199:16313..16373Blg00303.0-exon-Sc0000086-1570713199:16313..16373Branchiostoma lanceolatumexon
Blg00303.0-exon-Sc0000086-1570713199:18087..18145Blg00303.0-exon-Sc0000086-1570713199:18087..18145Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:10927..18145 +
Properties
Property NameValue
GeneIDBlg00303