Blg00107.0 (mRNA) - B. lanceolatum

Overview
NameBlg00107.0
Unique NameBlg00107.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:926062..931002+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00107.0 ID=Blg00107.0|Name=Blg00107.0|organism=Branchiostoma lanceolatum|type=mRNA|length=4941bp|location=Sequence derived from alignment at Sc0000026:926062..931002+ (Branchiostoma lanceolatum)
TCTTCCTAAAGTGTCATGGCCGCTCTCCAGTCAGAAAAGTCGTCTGATCC CGGCTTGGTCGCCGGTTCTGTGGAAAATCACGTCCCAGGACCGACCGTTC GCCCTCCCAGTCCTCTCGGGGCTACACCGAGACCTCCTCTGATGAGAGAC CGCCAGAGTTTGGCCAAGTCTGCCGCACGAGGCACAGGAACGGCCCGCCA AGAACCAGGTGGAAACCATGACATGTTATCGGGTATGTTTCCTCGGGCCG TATGAAGTTAATATGTTGTTACCCTGACGTGAAAGGTAGCCATATTTGAG AGGGGGCGGCCAGATTTAAGTGATTTTGTTAGTTTTACCGAAAAGTGATT GATTTAGGTCAGGAAACAACTAATTGGGAGATAAAACGTCCAAAGGAAGT TGCAGAAAGTTGTATCACAGCTATATAACCTCCTAGATCACAGGGACACA TTTTTCTGCCTAAGGATTTTCAACTACACATTTTCTGACATATTTTAAGA ATTTTTTTTTCACGCGCAAGTTTTTCATGTGCGCGGGCGCAAATTCTTCA CGCGCGGAAAACCTGTTCCCGTTGAAGTTGGCCTTGTAGTCTTGAAAGTA AACAAATTTAAAATGACTGGTGTTTTAGCTTCATAAAGTTTTTCCGCTAG GAAAAAAATGTCCCTTCCATAATACCCTGTTGATTTTCTTTTTTCTTCTT CTTTTTTTTCCAGAGAAAGTAGACAGTAGGTCTGAAGATGGTCAGGAAGA GTCTTCCAAAAACTTCACCATCCTGGCCTTCATCTTCGTGGCATCTCTGG TTGTCTTAGGTCTTGTCTACTGGAACTTCCCAGACCTTAAGGAGTGAGTA ACTCACCTGAACTGTACTGGAAGTGGCTCACATGATATAAATTTATCTTC AGACCCCATAAAGTTAATCTTACACCATGTTACCGATGACAAATAATGAA GAGACCTTAAAATCTGCTTCGTCCCTAGTATGTAGTTTTGTTTCTGAACC TTAATCAATGTTCTGAAATCAACCTGAATTGTTGGATTCTATGTTCGATG TCCCTTGTAGCATGTAAACCTTGAAGCGGCTATTTGGAGATGTCTTATGA AATAAACAACTTAATGGTTGGGTTTTAATGGCGGCCATTGTAATGCTAAT TTTTCTCATTGTGTCTTCTCTCAATAATGCATAACTTAGAATCTACATCA TACACATGTATGTGTAGACTCTACAAGAATAATGTAACCAGCCAGTAATC TTACACAACACTTTGCCTTACATTGTACAGTACATGTACCTGTTATAATT GTTGTGCAAATTAATTTAAAATTTGACTTGACTTGACTAAACAGGGAGGA GAGAGCAGCAGTGAAATTGCCAAGAAACATAGAAGATGCCAAAGCACTTG GTCGTGTGCTGTCAGCATACAAGGAGGCGTACTACTATGAAGTCATGGCA GGAGTGACTGTCACTTACATATTGTATCCTTTCAGTCGCAACATGTTTTC AAATTTTTTTCTCTGTAGTTCTAGGAGGTAATGCTGACTATGATTTACAT GTATTTGAGTTTTTGCTAGCCGTGGCAACTCTGGGAGGTATAGTGGCCTT CATCTCATAAGGGCTACTATCAGGCTTTTAGCTAGACAGGGCATCCAAAA ATTGGAGCTTCCCAATGTGCTTTATCTACGGAATAACAATTACCCGGTAG TACATGTATTGCATGTCAATCAATTTACATGCTGCTCAACTGTCTTGTAC GTGGAATGGTCCATTTTGCAGTGAGTGCATGGGGGGAACACATGTGCATG TGTATGTAATTACCAGGGATACAGGGTGCCCTCTGGGTGTTCTCTGTAAA AGAGGGGCATCCAATTTCCTTGTTTTCTTAGTGTAGGGCATCCAAAAGAC ACCCTGGCGCCCTGCTAGCTAATAGCCTGGCTACTATACATGTAAATGAT ATTAAACAAAAAGTGTCCTCCCAAAGTTGCCACAATTGCCAATTAAGATA GTGACTGTCACTGTTTGGATTGTGTCACAGTCTTTTCTTCTATAGTCTAA CTGGCTTTGCCCAGTAAAAATTGTTTTAAACACATTATAAGATATAGAAA TGGTTTATATTTTGACTTTCCTTGACTTGCTGATCACAGTTTACAAACAT TTGCCATACCAGGGTCCATCTTCCTCAGCATCCTGATAGGCTACATGTTC CCCTTCCCTCTGGCACTGTTCATTGTTTGTTTGGTGAGTCAACCTAGATC TACTATTGAGGGTGGATTATTTTGGTTTTAATTGCATCCAGAATTTTCCA TCCTAATTTCTCCACGTTTTCAGACGAAAGGAAAACATCTTTTAACATCA CAAAACCCACACATTACAGAAAAAGTAGGATCATTCGTCTTCCACTGTCT CAGGAAAAAAAGCTGAACCCAGTAAGTTAGAACTTACATGTAGTGTAAGA ATAGAGTAGTCATATGTTATATTGTTCATCATTATCTGTCCGTGCACTCT GTGTTACATGTACGTGTACTTGCAATTAGCCTACGGGCAGGATCGAATTT GCAATAATCTTTCTATATTTTTGCAAAAGGTAGAAGTGAGATAAAAAGTT TTGAATGGTCAATGTATTGTTCTGGCAATGTTTTTTTAAACTGTTCATCA TTCGGTAGTTATCTTTGGAGATTTGATTTAGACTTAGTGTTTGAGCATTC CATGAACTGATAAACACTTATGAACGTTCCTTATTTCCACATCATCTTCA GCTACTGGTGCCTCCTTTTGCTATTAATTGTTGTATCTACTCTTTATGAG TCAGTAGTTATCTTTGAAGGTTTGATTTAGACTTATGAACATTCTTCATT TCAAAGGTGTTCTGCAACCAGTGCTTCTTTTTACTGTTTATTGTCATATC AACTTTTTATAAGTCAGCAGTTATCTTTGAAGATTTGATTTAGACTCATG AACGTTCTTTGCTTCCCCAGTGTTCTGCGACTGGCGCCTCTTTCTGCTAT TTATTGTCATACCTTGTGGGACGACGGCTTGTTCTGCGCTACATCCCAGA CAGAGTTAAGCAGTGGTCAGCAACGGTAAGTGTGGACTAGTAAAGATGTG TGACCAACAAAATGTGCACAAACCTGTCACAAAATCAATTCACAAGTCTG GGAGCTCTAAATAACATTTTTGGTAATAATACGTGTTCTCTTGATCATTG ATTGATTTTAAGAGAATGGTTAATGTTTGTAGGTCCCTAAGCCCCGTCCA ATATGATGGGGTCTTTATCTTAATTTGGCAACCATCTGGTGATCAACGAA TATGGCCGAAGCACAGGAGGAGTAGGAAGGTTTTATAAAACTATAGCAAA TGAAAGCTGACAGCATTTTTTGGTACTCTCCAAGCAAAGGAGTGGTTTCT GCTGGTTTTTGACGTGTTTGTCTGGTTCTCTACTTTGTCATGTTTTTTTT GTCTCTGTGTTTTATAGGGACAAAAACGAAAAAAACATGACAAAGTAGAA AACCAGACAAAAATGTCCAAAACCATGTCAAAAAACAGCCGGAACCCCTC CTCTGCTTGGAGAGTAATTTTTTGGTAGATGCAGAATATCAGAAGAACAA GAGACTACTAGCAGTTATATCAAGATCGAGTTTCGGAAGGCTCCATTCAT ATTACAGGACATGTACCTTTACATGTACCTTTCAGAGTCAACAAGTGTTG ACACACATGATTGACATCTTCTCTTTGTCCCTTGCAGGTAAACCGTCACC GTGACAACCTGCTGTGGTACATCATCTTCTTGCGCATCACTCCGTTCCTC CCAAACTGGTTCATCAACATCACCTCTCCGGTTATAGACGTGCCTCTCTA CCCCTTCTACCTGGGCACCTTCCTAGGTGAGAATGCCTTCAAGCTCATCT TTTAAGTGTACTAGAAGAAGACCTCATGAAAGAAGTAATTTTGTTGTGTC TGTAAAGATAAGTCTTAAAGGCCTTGGTTTTTTTGCAGACCCCTCTTAGT CTTGGTAATAACAGAATATCTGTCTTCTTAAAGGGCCTGTTTGTAAGCTT TGGTTAAGCATCTAGTGTTGAACTTGAAGAATTTATCTGTTGTTGGTCTT TGGAATATCTTATTTTATTTGGATAACATGAAGCTTTCAATGTTTGCCTT CGAATCATAATATTATCAACGTGTAGTGATAGTCCTTGTAGCATTCATTA TTTCAAAATGATAACTTATTTTTAAGTCACTCCACCATAACAGTTCAGGA GATGACTATTCATCACATAGACTAAACTTACCAAAACTTAACATTTCAAG AGTGAGAATGATCAGAGAACTTAAATCAAATTTAAATCTTGTAGGTAAGC ACTTCAATTTGTGTACTTCAGAAATGCCGTATAAACTTTTTACAACAATG TCAAATACCGTTGCAGATGAACCTTCATTCTGATGTAAACTGATCTGTTA TGCCCCTTCTTTCCCCCAGGTGTGGCCCCACCATCCTGTATAGCGATCCA GACGGGCACCACCCTCTACCAGCTGACACACTACGGCGCTGCGGTCTCGT GGAAGTCCATGAGTTTCCTGGCTGTGTTTGCTGTGCTGTCCCTCCTCCCT ACACTGTTCAAGGGGAAGCTGAAGGAAAAGTTTGACTGATGTTGTAGATT TTATATGTTGAGCTTTAGCATGGAATTAAATTCTTAAATGCTCAAATTGA ATTATAAGTCCTTAAAAGATTTCACACTTTTAAAGGCTTTGAGTCCCCAA AAAGGATGCATGCTGGTGCCAAAGATGGGGCACAAACTTGAGGTTTTATC ACGCAACCTACATCTTGTCAGTACACAGGGATTTATACAGTCTCAACTTC TACTACTTGACTGCATATTAAAGGACAAAGTTCTGGTTATGTACTTTGTC AACGATTAGAATCTATAGTTTTTTTGTGTGCTGCTGAAAAG

Coding sequence (CDS) from alignment at Sc0000026:926062..931002+

>Blg00107.0 ID=Blg00107.0|Name=Blg00107.0|organism=Branchiostoma lanceolatum|type=CDS|length=984bp|location=Sequence derived from alignment at Sc0000026:926062..931002+ (Branchiostoma lanceolatum)
ATGGCCGCTCTCCAGTCAGAAAAGTCGTCTGATCCCGGCTTGGTCGCCGG
TTCTGTGGAAAATCACGTCCCAGGACCGACCGTTCGCCCTCCCAGTCCTC
TCGGGGCTACACCGAGACCTCCTCTGATGAGAGACCGCCAGAGTTTGGCC
AAGTCTGCCGCACGAGGCACAGGAACGGCCCGCCAAGAACCAGGTGGAAA
CCATGACATGTTATCGGAGAAAGTAGACAGTAGGTCTGAAGATGGTCAGG
AAGAGTCTTCCAAAAACTTCACCATCCTGGCCTTCATCTTCGTGGCATCT
CTGGTTGTCTTAGGTCTTGTCTACTGGAACTTCCCAGACCTTAAGGAGGA
GGAGAGAGCAGCAGTGAAATTGCCAAGAAACATAGAAGATGCCAAAGCAC
TTGGTCGTGTGCTGTCAGCATACAAGGAGGCGTACTACTATGAAGTCATG
GCAGGAGTGACTGTCACTTACATATTTTTACAAACATTTGCCATACCAGG
GTCCATCTTCCTCAGCATCCTGATAGGCTACATGTTCCCCTTCCCTCTGG
CACTGTTCATTGTTTGTTTGTGTTCTGCGACTGGCGCCTCTTTCTGCTAT
TTATTGTCATACCTTGTGGGACGACGGCTTGTTCTGCGCTACATCCCAGA
CAGAGTTAAGCAGTGGTCAGCAACGGTAAACCGTCACCGTGACAACCTGC
TGTGGTACATCATCTTCTTGCGCATCACTCCGTTCCTCCCAAACTGGTTC
ATCAACATCACCTCTCCGGTTATAGACGTGCCTCTCTACCCCTTCTACCT
GGGCACCTTCCTAGGTGTGGCCCCACCATCCTGTATAGCGATCCAGACGG
GCACCACCCTCTACCAGCTGACACACTACGGCGCTGCGGTCTCGTGGAAG
TCCATGAGTTTCCTGGCTGTGTTTGCTGTGCTGTCCCTCCTCCCTACACT
GTTCAAGGGGAAGCTGAAGGAAAAGTTTGACTGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00107.0-exon-Sc0000026-1570713199:926062..926293Blg00107.0-exon-Sc0000026-1570713199:926062..926293Branchiostoma lanceolatumexon
Blg00107.0-exon-Sc0000026-1570713199:926775..926904Blg00107.0-exon-Sc0000026-1570713199:926775..926904Branchiostoma lanceolatumexon
Blg00107.0-exon-Sc0000026-1570713199:927406..927534Blg00107.0-exon-Sc0000026-1570713199:927406..927534Branchiostoma lanceolatumexon
Blg00107.0-exon-Sc0000026-1570713199:928201..928294Blg00107.0-exon-Sc0000026-1570713199:928201..928294Branchiostoma lanceolatumexon
Blg00107.0-exon-Sc0000026-1570713199:929032..929136Blg00107.0-exon-Sc0000026-1570713199:929032..929136Branchiostoma lanceolatumexon
Blg00107.0-exon-Sc0000026-1570713199:929799..929937Blg00107.0-exon-Sc0000026-1570713199:929799..929937Branchiostoma lanceolatumexon
Blg00107.0-exon-Sc0000026-1570713199:930531..931002Blg00107.0-exon-Sc0000026-1570713199:930531..931002Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00107.0Blg00107.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:926062..931002 +
Properties
Property NameValue
GeneIDBlg00107