Blg00100.0 (mRNA) - B. lanceolatum

Overview
NameBlg00100.0
Unique NameBlg00100.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:384876..391245+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00100.0 ID=Blg00100.0|Name=Blg00100.0|organism=Branchiostoma lanceolatum|type=mRNA|length=6370bp|location=Sequence derived from alignment at Sc0000026:384876..391245+ (Branchiostoma lanceolatum)
AGACGATAGATTTGAGAGCTTTGTCACGTTAATTTTAGTTACAAATTTCA GTTGCTACGGACTGGGTGGGTGATTGACAGCGGCGAGCGTCTGATCTGTC TCTGGAGGCGAGAGGACTAGTCTAGTCAACCATGAACGCGTAAGTTTAGT AAAGTTTTACTGAGTGTATTTCTGATTTTCACACCGTCAAAACGCGGCAA GTACACCAAGCAAGAAACTTGATGAATTCGAGAGTTTTGAACAAATCTGT GTAAATTTGAATCTTCATCAGATACGACCTTTGTCGTTCTCAAGTAAAGT CTAGCCAGAGACAAAGAGAAAAAGGTTACTAGAGGCTACAGCAAGTAATT CACCCAAACCCGAAGGTGCAACGTCTTTTGTTCTGTTGTACTTTTAACCC TCCAATCATAATTCATAGTGTTTAACTTGGCAGTTAAGGGCACAAGGTCA TGGGAACCAATGCTGTTCGTAACAAACAGCTGATGACAGTTTGTCCTTTT TGAGATATAACCTGCGATAGAGAACACTTTTCAACGATAATTGACAAAAG GTTAAGTAAAGACAGTCCTTGGCATTGAAAGTCTATCAAAAGAGTCTTTT TTTTTCGGAACACGTGCCTCGTGTCTTACATATCTATGCACGTCGTGTCA CCCGGAGGCGGCACCCGAGACGCTCATAAATTTCACCGGCGACCCGTCAT GATGAGGACGAGGTCACAGGTAGCTCTCGTTGGGGAAAACTACAGAGTCT ACCATCTATAAGCATGTATCAGCCATGCTTTCTTCACGTGAATGGGCGTA TCTATAATTTTCTCATAGCTTTAACCAATGAGAGTGTTCCTTTCTCCTGC TGTATTTGCATCATAATAGTTGGCGTCAATCATTTCCAACCACACCAAAT TCTGTTTCTTCATATCTCAGGCAAGTCCCGCACAAACTTCATATCCCACG GAACTCCGAAGTTATCCAGACTGCGGACCGTCATCCCGCACTCGACAGCA GAAAACCTCAGCGACTCGATCGGTCGATATTCTCCAGTTTACCAGAACCT GTACGTAACGTTACGTTTCATTCTTGTCAGCTGCTGAATAACTTAATTGA TGGAGTTTTAGTTGTTGTTCTTAGCCCACTTGTGCCATCCCTACGACTTG TGCGAGTGGTGTATTTGCCATTAAGTATTTCTTCCGTTGACTTGCGAAGA CTGATCACTGCCAGTCGTCTTTGTTATATGGAAGCGTCACTCGATTGTTC CGGGCGGCATTACGACGGTACAATACCGGTACCGCGGCCCCGATCAAACC TGCAGCATTTATTTTGCTGGCAATTGCGGCGTTGTTCCCGCCCTTGGCCT GGGCCGGCGTTTGTGTAACTTTTCTTTTGGTACCCCCCAATTGAATACAC GTTCGATTCCAATTTACGTCAATCACGTCAAATAGAACATGATTGAGCCT GGTTCTGGATCGAAAACAGTCTGGGACTTTTGAAGCCTAATTTGATGACC GTGGTTCTACCTGGCGTGTTATATTAAAGACCGTCCCGGGGGCGTTAGAG TTGCCCGGTCGGCTCATAGATGTTCAGAGACCCGAGAAATTGGAGAGTTG GCCCGCGGTGATGTGGCACTAGGCCATGCATGTACAGACTGATTGGACCG GTTGGACTGCTCTGATAACCGCAGACTGAGGTAGTCGCCTTGCGGAGATA GTCGTAACTGAACCGGTTGGACTGCTCTGATAACCGACAATCTATGAATG ACCTTTATCAAAGCATCTTGTCTATGGATGTCAACTAGAACTAGTAGACA GAGGAAAGAAAACTTCAATTCTTTGATTAAAATAGATTTCATTAACAGAT CTAGGCATTTAATGATACACGGAATCCCTGATTTTGTGATCTAGGGGATG GGTGGCTGAACAAGGCCATCTTTGCACCTACTGTTCACTAAGATACGAGA AAGAAAGTTGCAAATGTAAAGTTAAATTTTACGTGTCTTAAATTCTATCG CTCCACAGAATCATGAAGATCTCTGTTCTGTTGGTTGTGTGTCTGGCCAG TGCCGCTTGCTCCAAAAACACGGAGGACAAGGAGAAGTTACTTCAAGACC TCCGCGAAATGCTGGGGCATAGTGCGTTCGGAGAGAGACGAGCGGTGGAC TCTCACCCCTGGATAACATCTTGCTCACGGGTAAGTCATCCCTAAGGAAT TGCTACGATTGTTGCCTTGATAATCGTGTTATAGGAGCCGAAGAATATTT TGATATTAAGATCCAAAATATGTAGAATATAACATTGTTCGCATTGTTAA TGCCTTTTAGATTAATTCAGTTATATGGTCGTGGGACTGTTGTGAATTGT GAGATTCTTGCAGTTCATAAGAATATAAAATCATTGCATCCTTCTTAAGG AAGCTATTGTCGCATTTCCCCATCAATTATGCAAATGCTGTCCAAATCAA CATAATATATGTCTGATGATATTCACCTTTGCCATACCTGTGTGTTACTA GTATGAAAATTTTATCATTTGCCATTTTTTTTTAATGTTCTCATTGATTA TGCAAATTAGATCATGATTTGGAATATTCATATCCATCAATGTTCCTCTC GGACCAAGTTACATATGTAATGAGCATAAAGTTGATGTCATTTAACAGAT CGAAATATAATTTTCTCCATTCCTTTCGTTAACTTAAGTCCTAATTTGCA TACATTACCATTATTTTGGTTATAAAGTTTACCTACAGGTAAAATATCAT GAAAATGCATTCATTCCTTCTTGATTTATCTGAATACAACACTGAAGAAC TCAAATTGTGCTATGCTGTTGGCAAGTCATGTAGACACAACGTGTACTGA ACGATGCAGCACGCAAACAGAAAATTGGATGCCTGAAGCCCCTGTCACAC TTGTGCGTATATACAAGCCCGCGGGAGTTGCGTATTAACATGTTGTTGGT TTAGGTTAAGTTTGCAGCAGAAGAAGTGATTTCTTAGGTTAATTTCGATC ACCAGGTTACACAACGGTGGGTCAAAGTAAAAACACAACTTTTTCCCCGC AAACCTTACTTAAACCAAACAAAATGTTAATGCGCAACGTAACTCACGCT CACTTAACAAGTGTAACAGGGCCCTAACGAAACGGCTATTTGTTTTGCAC TCTTCCCGCAGTGCGTTGCGGTACCTCTGGGTATGCAGAACGGCGCTATT CGTGACAGCCAGATCACCGCATCCAGCACGCACCCGCACTGCGCCACAAG CACGGCTCGCCTCCACTCTGAAGCTAAGCCTGATAAACGCCAGCCCGGAT GGGCAGGTGCCTGGTGTTCCGCCTCGCCGAATGCCAACGAGTGGTTACAG GTAAAAACAAGACCATAGCGCCTCCATGTCAAAAGATACAAAAACGTTAT GCTACAGTACCAAGGTCACATACCAGGGGGCCCAAAATCAACATTGACAA TTCCAGGTTGTGACCAATTTAAAGGCAAAAAAGGCTGTTTATACCGAAAA TAATGATTTTGTCCGCCATCTTGGATTTTGAGCGATGACGTCATCAAATT AGCATAATTTATGAATATTAAATCATGGCAGTTACATTTTATCACATGTG ATGTTATACATGAAGGAAACTAGTGTGGTTGAGCAAGAAAACATTGGAAA CAACTATGTTTTTATCGAAATTAGTGAAATTTGCATAAAATGCCTCTTCA GAAACCCGTTGCCATGGCAACAGGAAAAATGCTAAACTTATACTTTTATC ATAATATTGTTGCCAACTAAATTTTAGGAAAAGTTACCAAGTTTGGTTGT CCTACCATACGTCGTTTGGCAGTAATACGATGTCAAAGTTGGCGCGGGCA CAAGAAAGTAAGTATTCTATACTGACTTAACCTTACACATCAAACCCTAT TTCATTCTGAAAGATGACAATGTGTATTTCACATGACTTGTACATGTATT ACACTAGTCTCCAAGCAGACCTACGGGTTGGCAAAGACCGTATCCAACAG GCAGAAGGAGTTTTCATAGCCAACCCAAGTCTCATAGCCAACCATAGCAG TCTTAGATTGCACTATAAGCTCCTTCTGCCAGTTGGATACGGTCTTTGCA ATCTATTGGGTCTGGTTGGAGACTAGTATTTACACTGTTTCCTTTGCATT TCGCTTGATAGTCAGATCGCTCATCCTCGTACACTCCCCATTAAGTATCA ATATCAACCTCAAAGCTATATCAATCTGATTCCTAATATCTTTATATCAT AACTGCACGCCCTGTGTCTTTTTTTCTCCTCTGTAGATTGATCTGGGATC AGAGACGCCAGTAGCTGGCGTCATCACCCAGGGAAGGTCTTCGCTGCCCC ACAGCTCAGTGCAGCACGTGACTTCCTACAAACTCCGCTTCAGTACAGAT GGAAGCACCTGGTCCACCTACACAACCAACCTGGGACAGGAGAAGGTATC TATTGATATACCTGCCTCATCTACTCTCATTACATCAATTATAGCAAAAA ATAAAGCAATGGCTTTACCATCTAGACTTTCCTTGTTGTGTAAGAAATAA TATAGAATATATCAAAATAGCAATAACGTCGCTATTTAGATGATAACGTT GGTACGCGTAGACTAATGAACTAGACAGTAATGAATGATCAGGTCCGAGG GAGATCGACTTTTATTGTTTTATCTGATCATTCCCTCTCTTGTTCTAGTA GTTTAAAACTTTTTTTTCTTTCGTCCAATTTAGGTATTCACCGGTAACTC TGATCAGGAAACCGAAGTGCGCAACCTGTTAGACGCAGCAATAACTACAC GCTTCGTCCGTTTCTGGCCCCAGACATGGAACCAGTGGGTCAGCATGCGA GTGGAAATCCTTGGGCTGTAAGTAACCTATCCTATCGGTGTAATACTGTT ATAGGCCACAACAAAAGTGCCCTTTCCCTACATCACCCTAAAGGCATGCT ACATTTCTGGAGAATGATTTGCAAAAATTGGACGCAAATCTAGCTTTCAC AGATGGCGGTAGCTTTACATGCCATAAGTTGGGTCTATGGCCCAGTTTAC ATATGCATTTTCCAAGCACAAACGAGCTCAGCCCAAGTCCGACTCAGCGG AGTCGATTCAGGACTGTATAAATAAAAACCTAGTGTACTCAAGTTCCCTT TTCCCGGACTCGACTTGCTAGCATGGTCGACACCATGTTCAAGTCTCCCA GCGAGGGGAGCAAGTCGAACTCAAGTCGCGTAGACTTGTGTGTAAATGCT CAGGTTAGAGGTCATACGAAAATCAGTGAAAGTATTTGACGCAAATTTAG AAATTTGTTTCTTGCTCTTTATGCCTTAATTTTTTTGGTAGCTATTCTAG AATTCTAAGTGTGCTTGGAAATGCATGTGTAAACAGGGCCTATCTTGCCA CATTGCCTGCTACGAATAAGAGATGCAATGTTATTGTGCCGTACAAACGG AAAAACTTGGGATTTGTTTAAAAATTGGTTTTGCTTTCGTCCAGAGTACC TAAATGGCTCAATTGGCCTGACCTTGTTTGGCCGCATTTATGGACTTCAA AAGTGACAGAATAAGGAAAACTTTTCTACTTTGGGCTGCAAATTCCTTAG TACAATGTTTAAATGTTTAAAATTTAGTGGTATGTATCAAATCAAAAAGG TTCATATACTTTTCATGTTATTGTTTTCTTCTACAGGGACTGCGTTTAGT GCTATCTTGGCCTTCCAACCGAGACTACAGAGCCGCTGCATAGAGTTAGA TGCTTTGCCTCAGTTCATCATGACAGGGCCTGTGAGAGGGTATTGAAATC CAAGATACAGATTGTTATATAAAGAGATCAAACCAATGTCAATTATTCGT GTTTCTCAAATTTCCCAAGAATACAGCAAACAGTTTTTGAGGGGTTCCAA GAGAGAAAGTTCTCGTGAGAAGAAAGAAAGAATATTTTGGACTTTCACAA TGTCTTAAGACATTTGACAATATATATATACTGCAATTCGGAAAGTAGTT CTCGCTGCTGACGGGATCAAAATGGCTATTCAGGAAATCTTCCTGATGCA TTCGTTAAAAAGGAACCACACACCAAACAACCATTCTGTTCTTAAGTCTT CTTCGATCGTCCGCTGATACCCTCTCACAGCCTCTACCATAGAAAAGACA AGTTTCATGTTATCAAACCTCCAATCATCACTGTTTTATTTAATCCATAA TACGTGTACCATCTTGATAAAGTGAGTCAATGATTCTCATTTCACCTCTA TTTTCCTATTCTAACAACCGTATTGAGATCTTTAAGAGTGTAGGAGCCCT ACAATCAGCCCTTGCTGCTTTATCTATGTAGCCAAGAAATGACACAATAA AGGAAATGCTTGGTGTAAAA

Coding sequence (CDS) from alignment at Sc0000026:384876..391245+

>Blg00100.0 ID=Blg00100.0|Name=Blg00100.0|organism=Branchiostoma lanceolatum|type=CDS|length=663bp|location=Sequence derived from alignment at Sc0000026:384876..391245+ (Branchiostoma lanceolatum)
ATGAAGATCTCTGTTCTGTTGGTTGTGTGTCTGGCCAGTGCCGCTTGCTC
CAAAAACACGGAGGACAAGGAGAAGTTACTTCAAGACCTCCGCGAAATGC
TGGGGCATAGTGCGTTCGGAGAGAGACGAGCGGTGGACTCTCACCCCTGG
ATAACATCTTGCTCACGGTGCGTTGCGGTACCTCTGGGTATGCAGAACGG
CGCTATTCGTGACAGCCAGATCACCGCATCCAGCACGCACCCGCACTGCG
CCACAAGCACGGCTCGCCTCCACTCTGAAGCTAAGCCTGATAAACGCCAG
CCCGGATGGGCAGGTGCCTGGTGTTCCGCCTCGCCGAATGCCAACGAGTG
GTTACAGATTGATCTGGGATCAGAGACGCCAGTAGCTGGCGTCATCACCC
AGGGAAGGTCTTCGCTGCCCCACAGCTCAGTGCAGCACGTGACTTCCTAC
AAACTCCGCTTCAGTACAGATGGAAGCACCTGGTCCACCTACACAACCAA
CCTGGGACAGGAGAAGGTATTCACCGGTAACTCTGATCAGGAAACCGAAG
TGCGCAACCTGTTAGACGCAGCAATAACTACACGCTTCGTCCGTTTCTGG
CCCCAGACATGGAACCAGTGGGTCAGCATGCGAGTGGAAATCCTTGGGCT
GGACTGCGTTTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00100.0Blg00100.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00100.0-exon-Sc0000026-1570713199:384876..385014Blg00100.0-exon-Sc0000026-1570713199:384876..385014Branchiostoma lanceolatumexon
Blg00100.0-exon-Sc0000026-1570713199:385796..385925Blg00100.0-exon-Sc0000026-1570713199:385796..385925Branchiostoma lanceolatumexon
Blg00100.0-exon-Sc0000026-1570713199:386884..387055Blg00100.0-exon-Sc0000026-1570713199:386884..387055Branchiostoma lanceolatumexon
Blg00100.0-exon-Sc0000026-1570713199:388037..388225Blg00100.0-exon-Sc0000026-1570713199:388037..388225Branchiostoma lanceolatumexon
Blg00100.0-exon-Sc0000026-1570713199:389162..389320Blg00100.0-exon-Sc0000026-1570713199:389162..389320Branchiostoma lanceolatumexon
Blg00100.0-exon-Sc0000026-1570713199:389609..389742Blg00100.0-exon-Sc0000026-1570713199:389609..389742Branchiostoma lanceolatumexon
Blg00100.0-exon-Sc0000026-1570713199:390562..391245Blg00100.0-exon-Sc0000026-1570713199:390562..391245Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:384876..391245 +
Properties
Property NameValue
GeneIDBlg00100