Blg00040.0 (mRNA) - B. lanceolatum

Overview
NameBlg00040.0
Unique NameBlg00040.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000280:84164..87294+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00040.0 ID=Blg00040.0|Name=Blg00040.0|organism=Branchiostoma lanceolatum|type=mRNA|length=3131bp|location=Sequence derived from alignment at Sc0000280:84164..87294+ (Branchiostoma lanceolatum)
ATGGCAAGGTTGATGTTTTTTGCTCTCTTCATATTGCTGCAACAAGGAGG TGCAGCAAATGTCAAGAACCTCCCTGAGATTGTCCACCATGAAACAGCGG TCAATGAAGTCGAGGAACAGTGTACAGTGTACTGTCCCTCTCAGCCAACA CCGTCCTGTCCAGCTCTGGACCATCTCTTGCTGTACCTGAATGCGCAGCT CAGCCTGGAGGGACAGGTTGAAAAGCTGAAAAATAGGACTGACAGCCTGG ATGGACAGGTGCAGCAACTAGCTCAACAGGAGCTGGCTGAGGTAAGTACT GTCGTCGAGAAAGTGTATTCAACGTTAACAGAGGAAAAACTGGGTTCTTG AGCGTTTGTATACAATGTCACATCATTGCCAAACAAGATGACGAGCATAT CAATTCTACCACAAGTGTTTGTGTGCAAGTCCAAAAAGAAATTGAACCGT AATGTGCTTATTACCTTCTCCCTTCTGCCTAACTCTGTAATGAACAGAGA ACGGGGTGCCAAGCGGCTACTTCAGTGTGCTAAAGGNGTGCCAAACGGCT ACTTCAGTGTGCTAAAGGTTAAGAAAATGAGCATCCTCCAAGGAATGCAA GATGGTGTCCACACACATTTTCCACTTGCATGTCTATAGTTCTGATCACC TCAAACATGAACAAGATTCAGACACTCTACCATCTAGCTGTACATTCAAC GGGCAACACGTTTACAGGTTACTCAAAGTCGCTGCTTATGAGTCAGTATA CAAATGCGTATTCTAAGACCACGTTTAATGATTTGGGGCCAACGCTTACG AAGGACATTTTAAACAAACAGTTGCAGGTTGAGAATGACTTGAAAGCCAC CGTTGAGGCTCTACAGACGACAGTCAGCAGCCAGGACAACATTATCCAGC AGCAGGCTGCAGGTTTACAGCAGCTGCAGGGCACTCTGCAGCAACTGGAG ACCACCAATCAGCAACAAGCCAACAGCTTGCAGCAACTGGAAGGAACTCT GCAGCAACTGGAGACCACCAACCAGCAACAAGCCTACAGCTTGCAGCAAC TGGAGGCCACCAATCAGCAACAAGCCGACAGCTTGCAGCAACTGGAAGGA ACTCTGCAGCAACAGGAAGCCACCATCCAACAGCAAGGAACAACCTTACA GCAATGCGCCACATATCTGCAGCAACTGGAAGGTAATGAATTAACAGATG CCATAAAAGTTAGCACGAGCACTTTGCAGAACAAATTACCTTGTGTCAGG AGGCAGCTGTGGCGAAGTGTATCGAAACTTCAAAATAGAATGGCTTTGAT TACCAAGTCTTTAGTATGCACGTATCTACTGTCACATTACCCTTGTTGTT TAGTAGCTTGTGTGTCTCCATGTATACTAAAAATGATAGACAGAAAACGT TACCTCTAGTTCAGACGGCTTGATTAACTACCATTTGGCGTATGTTACCT GGATGTCTTACCTTAATCAACGACCAATAATCATTTCTTCCAATGGTCTA TCCATAGACAAGGTAACCGGTCCACAAACCTGCAAGGAGCTTCTCAATAG CGGTCATGACACCAGTGGAATCTACATGATCTATCCCGCTGGGGGAGGTA TCAGTCCCATCCACGTCTACTGTGACATGAACACTGACGGGGGAGGATGG ACGGTAAATAACAATCTCAACACGCACCTACACTTATCGAGTATCGAGCA TCACAATACATGCACTGCTTACATAATTAGTACATTTGATTAGATGAACA CTTAGCTAGTAAAAGCCGTGACATATTTCTTGTCTGTAGTAAACCTGCCC GCTCTCTTGACTCCTGTGACCACCTTCTATCTAGCATTGCTAAGTCAGAT AAAGATAACATTATCCATGCTAAGATGGCCGGATTCTTTGAACGTTGAAA CCAACTGCTGTGGTACAAAAACACATTATGATTCCAATTGGTAAATCATA TTCAGCAAATATCACAATAATCCTCTGTTATTAGGTTTTTTCAGAGGCGA CAGGATGGCTCTGTTGATTTTTTCCTGGACTGGCAGGCCTACAAGACGGG GTTCGGGGACCTGAGGGGAGAGTTCTGGCTGGGTGAGTGTCTTTTTTGTA TCAAGTGTTATGCTGTGCTAAAATGTATTTATTTTGTGCGTGTGCATGTC TTAGTCTGTTTAAACTAACTTAAAGCTCAGTACAGTACAATGCAATGTAG AGATTCTACTTTCTATAAGAACTGTAACATATTTTGTGCATGTTGTAATT GGCTATGCAGCTATTGCGTTCTCCACAAATGTTTTAGAAAGTAACGGTAT TATTGACACCACTTCATCATTATTTCATCAGGCAATGACAACGTGCACCA CCTGACGGCACAAGGAGGGTACGAACTGAGGGTGGACCTGGAGGACTTCG AGGGAAACTCGGCCTACGCCAAGTATAGTAACTTCAGGGTGGAGGATGAA GGGCACATGTACAAACTGACTGTGGAGGGATATTCGGGAACTGCAGGTAT ATCACAGTCTAATGTTAGCTATAGTTACCTGCATTGCGCAATACATCGTC CTGTGCTATGGTTGAAGCAGTCAGCATAAGATGATAATGCTTAGCTTGAA ATCCCCATTAGCCATTTGTGGCATGATTCCATATCGCTCGTCGGCATATT AAGTTCAAGCAAAGAAAGCATTTACTATTCAGGATGGTGTATTGAATAAA GACAATATCATTTTTCTGAAACATGTAACTGTCATTGTCTGATGACTGTC CCATATAATCTTAATGTAGGAGACATATAAACGTTTTGACGGTTCAACGG TGTTCTTGTACATATAATGGTGATAAAGCCTGTTGTAGAATATATGAATG GTCATCTGTCTAAAAGACATCTCCTTTCAGGAGATGCAATGGACCACCAT TCTTCCGCATTGTTCACAACGAAGGATAGAGACAATGATGGTCGCGTCAC TTACAACTGTGCTCAGAGATACAAGGGAGGCTGGTGGTACAATGCCTGTC ATAGTGCCAACCTGAATGCCCTGTACCATGCTGGGGCCCATCAGTCCCAT GCAGACGGCGTCAACTGGTACCCGTGGAAAGGATACAACTATTCTCTTAA ACACACTGAGATGAAGATCAGGACTCGCTAA

Coding sequence (CDS) from alignment at Sc0000280:84164..87294+

>Blg00040.0 ID=Blg00040.0|Name=Blg00040.0|organism=Branchiostoma lanceolatum|type=CDS|length=1296bp|location=Sequence derived from alignment at Sc0000280:84164..87294+ (Branchiostoma lanceolatum)
ATGGCAAGGTTGATGTTTTTTGCTCTCTTCATATTGCTGCAACAAGGAGG
TGCAGCAAATGTCAAGAACCTCCCTGAGATTGTCCACCATGAAACAGCGG
TCAATGAAGTCGAGGAACAGTGTACAGTGTACTGTCCCTCTCAGCCAACA
CCGTCCTGTCCAGCTCTGGACCATCTCTTGCTGTACCTGAATGCGCAGCT
CAGCCTGGAGGGACAGGTTGAAAAGCTGAAAAATAGGACTGACAGCCTGG
ATGGACAGGTGCAGCAACTAGCTCAACAGGAGCTGGCTGAGGTTGAGAAT
GACTTGAAAGCCACCGTTGAGGCTCTACAGACGACAGTCAGCAGCCAGGA
CAACATTATCCAGCAGCAGGCTGCAGGTTTACAGCAGCTGCAGGGCACTC
TGCAGCAACTGGAGACCACCAATCAGCAACAAGCCAACAGCTTGCAGCAA
CTGGAAGGAACTCTGCAGCAACTGGAGACCACCAACCAGCAACAAGCCTA
CAGCTTGCAGCAACTGGAGGCCACCAATCAGCAACAAGCCGACAGCTTGC
AGCAACTGGAAGGAACTCTGCAGCAACAGGAAGCCACCATCCAACAGCAA
GGAACAACCTTACAGCAATGCGCCACATATCTGCAGCAACTGGAAGACAA
GGTAACCGGTCCACAAACCTGCAAGGAGCTTCTCAATAGCGGTCATGACA
CCAGTGGAATCTACATGATCTATCCCGCTGGGGGAGGTATCAGTCCCATC
CACGTCTACTGTGACATGAACACTGACGGGGGAGGATGGACGAGGCGACA
GGATGGCTCTGTTGATTTTTTCCTGGACTGGCAGGCCTACAAGACGGGGT
TCGGGGACCTGAGGGGAGAGTTCTGGCTGGGCAATGACAACGTGCACCAC
CTGACGGCACAAGGAGGGTACGAACTGAGGGTGGACCTGGAGGACTTCGA
GGGAAACTCGGCCTACGCCAAGTATAGTAACTTCAGGGTGGAGGATGAAG
GGCACATGTACAAACTGACTGTGGAGGGATATTCGGGAACTGCAGGAGAT
GCAATGGACCACCATTCTTCCGCATTGTTCACAACGAAGGATAGAGACAA
TGATGGTCGCGTCACTTACAACTGTGCTCAGAGATACAAGGGAGGCTGGT
GGTACAATGCCTGTCATAGTGCCAACCTGAATGCCCTGTACCATGCTGGG
GCCCATCAGTCCCATGCAGACGGCGTCAACTGGTACCCGTGGAAAGGATA
CAACTATTCTCTTAAACACACTGAGATGAAGATCAGGACTCGCTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00040.0Blg00040.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00040.0-exon-Sc0000280-1570713199:84164..84454Blg00040.0-exon-Sc0000280-1570713199:84164..84454Branchiostoma lanceolatumexon
Blg00040.0-exon-Sc0000280-1570713199:84991..85345Blg00040.0-exon-Sc0000280-1570713199:84991..85345Branchiostoma lanceolatumexon
Blg00040.0-exon-Sc0000280-1570713199:85671..85816Blg00040.0-exon-Sc0000280-1570713199:85671..85816Branchiostoma lanceolatumexon
Blg00040.0-exon-Sc0000280-1570713199:86158..86245Blg00040.0-exon-Sc0000280-1570713199:86158..86245Branchiostoma lanceolatumexon
Blg00040.0-exon-Sc0000280-1570713199:86495..86659Blg00040.0-exon-Sc0000280-1570713199:86495..86659Branchiostoma lanceolatumexon
Blg00040.0-exon-Sc0000280-1570713199:87044..87294Blg00040.0-exon-Sc0000280-1570713199:87044..87294Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000280genomeSc0000280:84164..87294 +
Properties
Property NameValue
GeneIDBlg00040