Blg00036.0 (mRNA) - B. lanceolatum

Overview
NameBlg00036.0
Unique NameBlg00036.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000280:158344..164588-

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00036.0 ID=Blg00036.0|Name=Blg00036.0|organism=Branchiostoma lanceolatum|type=mRNA|length=6245bp|location=Sequence derived from alignment at Sc0000280:158344..164588- (Branchiostoma lanceolatum)
ATGGCGCCTCGCGTGCTACACGTGTCCGGAACCAACCGCCAAGTCGGGGT CCAGGTCGGCAAGGCGACGAAGAGACAGATCCAAGACGCCATGAGCTCCT ACGAACCATTCAAGGAGATCATTTCCTCCTTAGAGACCAGCGAAGGGAGG CGGGTGTACGAAGGTTCGAGTGATTTGTTTTGGTGATTTAAAGACGTTGG TCTCCAAGAAAGATACACATTCTTACGTGTATAGGCATAAATCTGGACCC TACGTTGCCCTAAAACTGTTCACTCTGTATTATTGTAGGGCAAGGGTTCT GTACAAACTGTACAAAGGGGGCTACATTGTTGTACATTGTTGAGCAAATA GGATGACGTTGTCCCGGTAGCCTCCGTTAAACCCGTGTAAGGCGTGTTAC ACAACATGAAAATACTTCGGCCGACAGACTCTGCGAGCTCTAAATAACAT TTTCGGCAGTAGTACGACCGGTCTTCTCTCGATCATCGACGGGCCGTTGT TCACACTATGCCGAGCTCCGTAAAATTTGATACGGTAGATTTTTTTCAGG CGAAAACTACGCGCGACCCTCTGTAGATTTTAAATTGGGCGACCTCTCCT GACGATAAACAAATGCGACCTAGCTATATTGAAGCTTATCCGTGTGACAG GAGCTTTACGACTTCCTACTGTAGGCGATCGTACAAACGCTTCTCATGAG TGAGTTAGCGGAGTAGAATAAGTAGCTATTTCTTTTCTTTTAAGTCAAGT CATGTCTTACTCATGGCTTCCATATGGTAGAAAGTAGGGTCATTGACCTC GCCAGGGCTGTACACAACGTGAGGACTTTGACCTGTTAACGGATGCCAAA GAAAATGAGTCGAAAAATCGTTACTAACACTTTGACTCTTTTACTGCATT TAAGTTCGCGGTGATTTAATTTCGCGGTAAGGAAAAAATATTGTGTCCGG TGGGTTTGAGTTCGCGATAGCACTAAAGTCACACACTGTTACAGTAATGG AAACACAGGCACCCTTACGGATAGCCAGTCAGAAACCACCTACTAGTGAC TCGGTAAGGGTGCTACAGACGAACAGAACGGTAACCCTCATCTTTAGCTG TTAACGAAGCTTCTCTCAACCGGGACGGGAGGCGATATCAACTTCCGACG GCATTTGACCCATTGCTCACGTCACACGCGCAGATAGTCACGTGTCCACA GCGATTGCGTAAGACAGCTGAAGAAGACTTAGTGGGTCGGTGAAAATTCC GATGAGTCCAATTGTTGAGTTGAAGGACTGTCTATCACTACAGAAATGAA TGCAAAAGACTATTTTTACACAACCAAGAGATTTATTACAAAATTGTTTG TACGATTGGGACCGCATAGTGATGCCATCCCCTGTGATTGTACATATGTA AATACTTTGCGTTTGGGATTGCATCACATTATTATGTATAAGCAGCAACA CCTGTGCTACATTGCTATGTGAACCAGTCAGAATTGCTTTGAAGAATGTG ATAGATGGTCACTGAAACGTCGGTGGAATAAATCTCTTGGTTGTTTAAAA AAGAGTCTTTTTTTTATCCAGTAACTTACCAACCTGATGAAACTATTCAC GGATGTTTATCTCTTAATAAGTTGTAATGAAGATCACTTCCAACGGCCAA GACAACTCTTGGTCGTCTTCACTATCCACCAAAGATACTCCTCTCTCTAC AATTCTATAATGTCAAGTTTGAATTAACTCCCTGTTGATTTTCCGCAAAG GTTTCTTAAAGGCGGCGAAGACTGCGTACCCGAACTATGTGGAGGAGTTG GAGGGGATGGCAGAGGGAGCCGAGGTGCCGTTCGAACACCTGTTCATCGT CAACTTCGAGTTCGAACGTGAACTCCTGAACATGAAGAAACAAGATGAAG AGGAAGGGTTGAAAGGTCTTGGGCCCATTCATAATTCATATTCATTCCTA TTTTAGACATATTTGCAGCACTACGGTACACAGACTTGGGTGCAGAACTT TGATTACCAGTCCATGCACCATTCTCCGTGATTCGACTCATTGAGTTACT TGGCATATCTTAACAATAATCGTTGCATCTATATAGCTAGTGGTACGTTG TAAGAAACCAGGTGTTCTTGACCGAAATTGTAAAATTCTATTAGTCGGAG TCACTTAAAACCCATTTAAGGGCTGAAAAATTGTATAAAAGAACAACAAC AACAAATGACTGACTCAAAAGAAGAGTGCACATTTCAGAAAAGCTCAAAA CTGTGTGGATCAACTGGCAAATTATCCACCCTATTTGGTCACTGGTCGAT ATCTACTATTCTTATCCCCATACGTACAGGGGCATGGTATAGATATAATT GTCCTTTGCAAGCGATATATTTACCTTGTACTTCATTCTAGTAACACATC CTCCATACATCCAGGTCGGGAAAAGAGGAATAAAATTGAATCTTTACTTC TCGATAAAAATACATTTGTAAACACAGACGTTTCAAGCGCCCATCCGGCA TTTTTTTCAATGAGGAGAATGATGTTACGTCGATCTTACGGAAGCATCAT GATGATATCAAGATGATAAGCGTCTTTATGCTTCCGAAAGTTCAAAGTAA ACATCTTTCTCCTCATTGAAAAAAAAGCTGCCGGATGGGCGCTTGAAACG TCCGAGTTTACAAATGTATTTATTCAGTAGTGAAGATTCAATTTTATTCC TCACATCCTCCTCATTTGTTTCACGTCACTGCAGGTTGCACCACGGTGTT CCTGAACTACCGTGACGGCCCGAGAGTGTTGGCCCACAACGAGGACGGCC CGGCCGGCGAGCAGGGCTGCATCGTCGCGGCGCACATCGAACCTTACCGG CTACCCGGAGGGAAGATTCTACCCGAGGAGAACTTCGTGTCTTACTGTTA CACATGCCTCCTGCCGGGTGTAGCGTACTCCTTCAACTCTCGCGGCTTGT GTATCACGTGTAACACGCTAGTGTCAAAGGACGCGGAGGAAAATAAAATC GGTAAGTATCAATAAAAATTCGATGTACTTACTATCAGATACATGCATAT GTTTTTGCAAAGACCTTTGTTTCAAAATCTAAGGGAAAGTCTCTATTGCT AGGTATAACCATTTGAAGACTTTGAAATATCAAGGCTTCAGAAATGGCCT CATCTTCTCACTAAGAGTATGTTCATATAAAGATACTGGCCTTGTCTTAA TGCTTTGCGAAAGTCTTTACAACCATGCAAAACAGATAGTGCTAGCAGGG AATAACTATCTGAAGACAGCTATAAAAGTTTTCCAAAACCTGTAATAGCG TAAGTACCAACCAGTGTAAAGCGGCCATCTTTGCGATGACAATTGAGGCC ACTTTTTTGTCGGTTTCCTGGATGTTTCGAATTGACCTTCGTTGTCTCTA TACTGGTTCCTTTTCTCTTGAGGCTGTAAAAGATGGGGCACTGCATGCAC AAAACCAGTGTACCTAACGAAAGACCCCATCTTCTATAATAACGAGTCCC AGCTAAGACGGGTTGTACTACAACTAACTACTTGAAAAGGCATCATGCAT GCTTTACCTAAACAATTGAGAATGACTGCTCTATCTTTACCCTAACGCCA AAAATAGTTACTCAAGCAACTGAATAAGATTTTGAAACAGTCAGGCGTTT CAGACAGCATCCGTTGTCTTTCGTCAGCTAGTGACTAACGGTAAGGATTG GAAAACCAGATTTATACTAAAACTCTGAATAGATATGTTAATGAGGTTAA TACAATGTAGGGTGTCTTGACGTAGTCTTCACAAGAAGGTTAATTCAAGA CAAGGTTTATGCCAGTAGTTCAATTAGCGACTGTTGTTTTAGTACAACAG TAACTAAATGTTGTTCGTCCGGGGGTGAGGGGTGCTGGGCAATGCATTAT CCCAAGTGCCTGAAAGTTCAACGCGTAGACCCCCTTTCCAGTTGAGGGTG GGATTGTGCATCCTCTCATATATTGCTTGTCTAACTCCCCGTTCGAACCA GCGGGATTCACGATCTAGGATGTCCGTGGATTCGAGATTGAATGAAACGT CTGACTGTTTCAAAATTTTATCCAGTTACTTGAGTAACTTTTTTTGGCGT ATCTCACTACCCGGATGTCTAACCTTCATCAACACCTTTACCATTACCTT AACTAGGTGTATCGTTTGCTTGCCGAGCGGTTCTCTCCGCCACCTCTGTT GAAGAGGCGGTGGCTATGTTGAAGGGTGACGGTGTCGGCATGGCCATTGG GTACTCCTTCAACATGGTCAGCACCAGGGACAGCACCCGGAGGATGTATT CTGTGGAGACCGCCGCGGCAGTGGGACAGGCGACCACTCTGGTGTCCGTG CACGCTGTGGAGCCAGTGGACGGGAGTACAGAGGGCCATTTCTACCATTA CAATCTGTAAGCTCACTTATTTTCACAGCCAAATCAATCAATCAATCAAT CAAATAAATCAAATTTACTTGGGGTTCCAAACATATAAACCAATCATCGT TACAATGGTACAGTGAGAAATAAAGTGACGTTTGTCTTCTAGTTCTCCCC TCCTCCCTTCTTCCCTCACTCTTCCTTCCTTCTTTCGTGTCATCTCTTCC CTCTCTCTAGCTACCTAGCTTATGGTAGAGGAATATAGTCTCTACCAGAC TAACTGCGCGCAGGCTATAGGGAGAATATTTGCCAGGGAAGTGGCCATCA TTGGGTTTCATTTGCAGGCGCAGATGTTAACCTTACCGTGGACTGACTTT CTTAGCAAATTGCCAAATTTTACGATCCCTTTTCCCCGTAGAAAGGCTTT GTGGAGGCTAAAAGAATAGGTAAAGTTGTTTATTGTGAGTGATATGAAGA GATAGTTTTGTTTTTTAAATTAGCACTTCATATTGGCACCGTTTGGTCAC AAAACTTTCTCAGAGAGGCATACCATTTGGTTAGTTTCGTTTCACCACGT TCTTACCTGATGGCATAATTTGTTTATCTTCCGCAGGTATGAACACCTTT CCGTCCCCGAGTGGCCGCTGAGCCCCAGTTCCCACCACAGGAAGGCTCGC GCGTCGGAACTGGTCGCACCTCGGACAAAGGAGGACGTTCTCGCTGTCCT AGGTAAAGACCCCAATGACCAAACATTGGTTATCATGATCATTGGTCATT GGGAGCATTGGCCATTCAGATTTAGGGTCATTGAGGTCGGAGACTTTTAG TCCTTATGCTTTCATGTAGATCATCATCAGATACGATAGGGACCTTGTCA TTTGATATCTTTTAGAATATTTTTCTAGTTTTATGTATCAATGAAAACAC CAAACGTTCAGACCCCGTCCTTTTCATCAGGTGACACCGAAGATCCCGAG TACCCGATTTACCGATCTGGTACAGGGAGGGACAAGGGATACACACTCAA CACAGGTTACTTATTCATCTGATTGTGCATTTCTATATGTATACGTAATG AAATTAAATTTAATTTAAGACAAGTGATGTGCAGGCCATATACATGTACA CCTGACCAATCCTTTCCGTATATTCAATGTAACCTACATTGACTAGTAAA TATATATATACTACTTGTAGTTCATGCTTGTAGAGAGCCTAGGTAGCATG TCAATGGTGAAGTAGATTCTACATTTGATCCGAAAATGGAAGTATGAAGG AATCTACTGTGTTTTGGTCAACGATTCATCAACGCATGGTTTATACTTGT TCTTTTCTAGTATTAACTGTACGAGGCTGAGTCAGAAAGACATGTCACTA GTATCATAGCAGTTTCATTTTTGTGTGAAATGACTTGACATTTGACACAA ATGTAAAGGCACATATCTTCCTGAGAGTGAAGTATCTCGATTCGTTCAGA TTTTTATTATACACGACAGTAGAGATGAGGCAGCCTGGATCAATTTTATG CAAATCTATTCATGAGATGCAAATTCATGCCAACCCACTCTCATATATAG TCTCATTTTGCACTACAAATTTTTTAGAGTAGATTAGTTACCTAGAATCC TTATTAATAGAAGTAGTCATACGTTGTACTGTTGACTTGCCTTGTACCAC AGAAGAAAATACTTAGTACGCTTAAAGTATTTTGTTATAATATTAAACAG TTGTTGTACAGTAAAGTTATTATTCATACCTTTTACTTCTGCAGCGGTGT TCGAACTACAGAAGGGTGTCATGGAGGTTCACACTGGTAACCCTAAGGCC GACGAGAAGCTCGGGCCGGCACTTCAGTTCATCTTACCCGCTTAA

Coding sequence (CDS) from alignment at Sc0000280:158344..164588-

>Blg00036.0 ID=Blg00036.0|Name=Blg00036.0|organism=Branchiostoma lanceolatum|type=CDS|length=1137bp|location=Sequence derived from alignment at Sc0000280:158344..164588- (Branchiostoma lanceolatum)
ATGGCGCCTCGCGTGCTACACGTGTCCGGAACCAACCGCCAAGTCGGGGT
CCAGGTCGGCAAGGCGACGAAGAGACAGATCCAAGACGCCATGAGCTCCT
ACGAACCATTCAAGGAGATCATTTCCTCCTTAGAGACCAGCGAAGGGAGG
CGGGTGTACGAAGGTTTCTTAAAGGCGGCGAAGACTGCGTACCCGAACTA
TGTGGAGGAGTTGGAGGGGATGGCAGAGGGAGCCGAGGTGCCGTTCGAAC
ACCTGTTCATCGTCAACTTCGAGTTCGAACGTGAACTCCTGAACATGAAG
AAACAAGATGAAGAGGAAGGGTTGAAAGGTTGCACCACGGTGTTCCTGAA
CTACCGTGACGGCCCGAGAGTGTTGGCCCACAACGAGGACGGCCCGGCCG
GCGAGCAGGGCTGCATCGTCGCGGCGCACATCGAACCTTACCGGCTACCC
GGAGGGAAGATTCTACCCGAGGAGAACTTCGTGTCTTACTGTTACACATG
CCTCCTGCCGGGTGTAGCGTACTCCTTCAACTCTCGCGGCTTGTGTATCA
CGTGTAACACGCTAGTGTCAAAGGACGCGGAGGAAAATAAAATCGGTGTA
TCGTTTGCTTGCCGAGCGGTTCTCTCCGCCACCTCTGTTGAAGAGGCGGT
GGCTATGTTGAAGGGTGACGGTGTCGGCATGGCCATTGGGTACTCCTTCA
ACATGGTCAGCACCAGGGACAGCACCCGGAGGATGTATTCTGTGGAGACC
GCCGCGGCAGTGGGACAGGCGACCACTCTGGTGTCCGTGCACGCTGTGGA
GCCAGTGGACGGGAGTACAGAGGGCCATTTCTACCATTACAATCTGTATG
AACACCTTTCCGTCCCCGAGTGGCCGCTGAGCCCCAGTTCCCACCACAGG
AAGGCTCGCGCGTCGGAACTGGTCGCACCTCGGACAAAGGAGGACGTTCT
CGCTGTCCTAGGTGACACCGAAGATCCCGAGTACCCGATTTACCGATCTG
GTACAGGGAGGGACAAGGGATACACACTCAACACAGCGGTGTTCGAACTA
CAGAAGGGTGTCATGGAGGTTCACACTGGTAACCCTAAGGCCGACGAGAA
GCTCGGGCCGGCACTTCAGTTCATCTTACCCGCTTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00036.0-exon-Sc0000280-1570713199:164426..164588Blg00036.0-exon-Sc0000280-1570713199:164426..164588Branchiostoma lanceolatumexon
Blg00036.0-exon-Sc0000280-1570713199:162674..162838Blg00036.0-exon-Sc0000280-1570713199:162674..162838Branchiostoma lanceolatumexon
Blg00036.0-exon-Sc0000280-1570713199:161588..161854Blg00036.0-exon-Sc0000280-1570713199:161588..161854Branchiostoma lanceolatumexon
Blg00036.0-exon-Sc0000280-1570713199:160183..160432Blg00036.0-exon-Sc0000280-1570713199:160183..160432Branchiostoma lanceolatumexon
Blg00036.0-exon-Sc0000280-1570713199:159487..159602Blg00036.0-exon-Sc0000280-1570713199:159487..159602Branchiostoma lanceolatumexon
Blg00036.0-exon-Sc0000280-1570713199:159184..159258Blg00036.0-exon-Sc0000280-1570713199:159184..159258Branchiostoma lanceolatumexon
Blg00036.0-exon-Sc0000280-1570713199:158344..158444Blg00036.0-exon-Sc0000280-1570713199:158344..158444Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00036.0Blg00036.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000280genomeSc0000280:158344..164588 -
Properties
Property NameValue
GeneIDBlg00036